Rh7BG106700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008986
Physical Location & Seq
Reverse (-)
8020130 .. 8026558
6429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG106700.1

Sequence Viewer

Length: 948 bp
ATGCGTTTCTCCCCTCCAAAATCTTATTCTGGTTCCGTGAAGCCGTGGAGGAGCTTGCCCGGTAAATCGTTGCAGCCGAGAAGCTTGAGCGAGCTCGGAGTCGTGCAGCTCTGGTACCTCTCCACCGCCTTCAACATGACTTCGAAATCGGACTTGGTAGGCGTGGAGCTCCGAAACACCAGTGAGGTGTCCAACTCGGGTGCCCAGAGCATCTCTCGGAAAGGAGCTCGTTTGGCATTGGCAGCCAGAAGAGAGGACCGTCTTCGTGCAGTGGTGGATAAAGCTCGACGGTTAGGGTCTCCTGATGCCATTATGATCCTAGCTGATGTTTCAAAGCTTGAAGACTGTAACCGACTTGTTAATGGCACTGTGAATCACTTTGGTCAATTGGACCATTTGGTGAACAATGCCGGGATTACACAAGCTGGATTGTTTGAAGATTGTAACGAGTTCTCTTATCTGAAATCAATTATGGACATTAATTTCTGGGGGTCAGTGTATTGCACCAAATTTGCAGTTCCATACTTGAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCAACATGGTTTTCTACACCAAGGTTGAGTTTCTACAATGCAAGCAAGGCAGCCCAGACGTGCTTCTTCGAGACATTGAGGGCTGAATTTGGTTCTGATATGGGGATTACGATTGTGAGTCCTGGAGTGGTCGAGTCTGAAATGACAGGAACCCCCCAGTTTCAATCTCAAGTTGGTTCAGATATGATGCCATGTCAGTCAACAGAAGTGTGCGCGAAGGCAATTGTGGACAGTGCTTGCCGTGGAGACATGGACTTGATGGAGCCGTCTTGGATTCGGGTCGCATTTTGGCTTAGGGTTCTCTGTCCTCAGCTACTCGAGAGCATTACCCATTCGAACTCAATCAAAAGGCCAAGGACTACCTCAAACAAAGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

315

Amino Acids

34.82

Weight (kDa)

9.11

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 66 - 242 5.4e-28 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 68 - 239 1.7e-36 short chain dehydrogenase
KR PF08659 68 - 217 5.4e-06 KR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 114
AccB1I GGYRCC 2 cut(s) 114, 200
AccII CGCG 1 cut(s) 782
AciI CCGC 1 cut(s) 126
AclWI GGATC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 509, 653
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 5 cut(s) 133, 333, 341, 437, 731
AjiI CACGTC 1 cut(s) 627
AjnI CCWGG 1 cut(s) 688
AjuI GAANNNNNNNTTGG 4 cut(s) 10, 42, 137, 169
Alw21I GWGCWC 3 cut(s) 96, 171, 229
Alw26I GTCTC 3 cut(s) 303, 632, 807
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 2 cut(s) 196, 884
AoxI GGCC 1 cut(s) 917
ApeKI GCWGC 4 cut(s) 73, 106, 242, 617
ApoI RAATTY 2 cut(s) 509, 653
AseI ATTAAT 1 cut(s) 480
Asp718I GGTACC 1 cut(s) 114
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 2 cut(s) 256, 391
AsuC2I CCSGG 2 cut(s) 60, 412
AsuHPI GGTGA 1 cut(s) 412
AsuII TTCGAA 2 cut(s) 143, 902
AvaI CYCGRG 2 cut(s) 196, 884
AvaII GGWCC 2 cut(s) 256, 391
BaeGI GKGCMC 1 cut(s) 205
BanI GGYRCC 2 cut(s) 114, 200
BanII GRGCYC 3 cut(s) 96, 171, 229
BbsI GAAGAC 2 cut(s) 254, 348
Bbv12I GWGCWC 3 cut(s) 96, 171, 229
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 4 cut(s) 85, 118, 254, 629
BccI CCATC 1 cut(s) 820
BceAI ACGGC 3 cut(s) 28, 792, 817
BciT130I CCWGG 1 cut(s) 690
BcnI CCSGG 2 cut(s) 60, 412
BcoDI GTCTC 3 cut(s) 303, 632, 807
BfaI CTAG 1 cut(s) 320
BisI GCNGC 4 cut(s) 74, 107, 243, 618
BlsI GCNGC 4 cut(s) 75, 108, 244, 619
Bme1390I CCNGG 3 cut(s) 60, 412, 690
Bme18I GGWCC 2 cut(s) 256, 391
BmeT110I CYCGRG 2 cut(s) 196, 884
BmgBI CACGTC 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 256, 391
BmiI GGNNCC 5 cut(s) 34, 116, 202, 718, 831
BmrFI CCNGG 3 cut(s) 60, 412, 690
BmrI ACTGGG 1 cut(s) 718
BmsI GCATC 3 cut(s) 219, 295, 744
BmuI ACTGGG 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 254, 348
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 2 cut(s) 860, 876
Bpu14I TTCGAA 2 cut(s) 143, 902
BpuEI CTTGAG 3 cut(s) 106, 547, 720
BpuMI CCSGG 2 cut(s) 60, 412
BsaI GGTCTC 1 cut(s) 303
BsaJI CCNNGG 4 cut(s) 44, 587, 808, 920
Bse1I ACTGG 2 cut(s) 180, 724
BseBI CCWGG 1 cut(s) 690
BseDI CCNNGG 4 cut(s) 44, 587, 808, 920
BseMII CTCAG 1 cut(s) 890
BseNI ACTGG 2 cut(s) 180, 724
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 85, 118, 254, 629
BsgI GTGCAG 2 cut(s) 125, 288
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 1 cut(s) 919
BshNI GGYRCC 2 cut(s) 114, 200
BsiHKAI GWGCWC 3 cut(s) 96, 171, 229
BsiHKCI CYCGRG 2 cut(s) 196, 884
BsiSI CCGG 2 cut(s) 60, 411
BsmAI GTCTC 3 cut(s) 303, 632, 807
BsnI GGCC 1 cut(s) 919
Bso31I GGTCTC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 196, 884
Bsp119I TTCGAA 2 cut(s) 143, 902
Bsp1286I GDGCHC 4 cut(s) 96, 171, 205, 229
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 919
BspCNI CTCAG 1 cut(s) 889
BspFNI CGCG 1 cut(s) 782
BspLI GGNNCC 5 cut(s) 34, 116, 202, 718, 831
BspPI GGATC 1 cut(s) 310
BspT104I TTCGAA 2 cut(s) 143, 902
BspT107I GGYRCC 2 cut(s) 114, 200
BspTNI GGTCTC 1 cut(s) 303
BsrI ACTGG 2 cut(s) 180, 724
BssECI CCNNGG 4 cut(s) 44, 587, 808, 920
BssMI GATC 1 cut(s) 315
BssT1I CCWWGG 2 cut(s) 587, 920
Bst2UI CCWGG 1 cut(s) 690
Bst4CI ACNGT 5 cut(s) 260, 291, 347, 370, 800
Bst6I CTCTTC 1 cut(s) 244
BstBI TTCGAA 2 cut(s) 143, 902
BstC8I GCNNGC 4 cut(s) 56, 92, 610, 805
BstDEI CTNAG 2 cut(s) 860, 876
BstDSI CCRYGG 2 cut(s) 44, 808
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 3 cut(s) 303, 632, 807
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 3 cut(s) 233, 242, 614
BstNI CCWGG 1 cut(s) 690
BstSCI CCNGG 3 cut(s) 58, 410, 688
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 4 cut(s) 85, 118, 254, 629
BstV2I GAAGAC 2 cut(s) 254, 348
BsuRI GGCC 1 cut(s) 919
BtgI CCRYGG 2 cut(s) 44, 808
BtrI CACGTC 1 cut(s) 627
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 5 cut(s) 187, 276, 366, 501, 805
Cac8I GCNNGC 4 cut(s) 56, 92, 610, 805
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 2 cut(s) 256, 391
Csp6I GTAC 1 cut(s) 115
CviAII CATG 4 cut(s) 136, 573, 759, 817
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 2 cut(s) 860, 876
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Ecl136II GAGCTC 3 cut(s) 94, 169, 227
Eco130I CCWWGG 2 cut(s) 587, 920
Eco24I GRGCYC 3 cut(s) 96, 171, 229
Eco31I GGTCTC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 256, 391
Eco53kI GAGCTC 3 cut(s) 94, 169, 227
Eco88I CYCGRG 2 cut(s) 196, 884
EcoICRI GAGCTC 3 cut(s) 94, 169, 227
EcoRII CCWGG 1 cut(s) 688
EcoT14I CCWWGG 2 cut(s) 587, 920
EcoT38I GRGCYC 3 cut(s) 96, 171, 229
ErhI CCWWGG 2 cut(s) 587, 920
FaeI CATG 4 cut(s) 139, 576, 762, 820
FaiI YATR 9 cut(s) 137, 314, 473, 523, 574, 668, 752, 760, 818
FatI CATG 4 cut(s) 135, 572, 758, 816
Fnu4HI GCNGC 4 cut(s) 74, 107, 243, 618
FriOI GRGCYC 3 cut(s) 96, 171, 229
Fsp4HI GCNGC 4 cut(s) 74, 107, 243, 618
FspBI CTAG 1 cut(s) 320
GlaI GCGC 1 cut(s) 781
GluI GCNGC 4 cut(s) 74, 107, 243, 618
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 1 cut(s) 919
HapII CCGG 2 cut(s) 60, 411
HhaI GCGC 1 cut(s) 782
Hin1II CATG 4 cut(s) 139, 576, 762, 820
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HindIII AAGCTT 2 cut(s) 82, 335
HinfI GANTC 5 cut(s) 99, 373, 685, 701, 841
HpaII CCGG 2 cut(s) 60, 411
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 3 cut(s) 403, 768, 796
Hpy188I TCNGA 8 cut(s) 98, 151, 173, 219, 462, 664, 706, 748
Hpy188III TCNNGA 3 cut(s) 302, 637, 886
Hpy8I GTNNAC 3 cut(s) 403, 768, 796
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 139, 778
HpyCH4III ACNGT 5 cut(s) 260, 291, 347, 370, 800
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 7 cut(s) 73, 106, 269, 504, 515, 569, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 242, 614
HpyF3I CTNAG 2 cut(s) 860, 876
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 4 cut(s) 139, 576, 762, 820
HspAI GCGC 1 cut(s) 780
KpnI GGTACC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 5 cut(s) 51, 166, 174, 224, 829
Lsp1109I GCAGC 4 cut(s) 85, 118, 254, 629
LweI GCATC 3 cut(s) 219, 295, 744
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 2 cut(s) 347, 443
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 6 cut(s) 254, 261, 353, 449, 552, 625
MfeI CAATTG 2 cut(s) 386, 789
MhlI GDGCHC 4 cut(s) 96, 171, 205, 229
MluCI AATT 7 cut(s) 386, 468, 481, 509, 653, 789, 943
MlyI GAGTC 3 cut(s) 108, 694, 710
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 8 cut(s) 24, 42, 128, 178, 247, 639, 885, 940
MseI TTAA 2 cut(s) 360, 480
MspI CCGG 2 cut(s) 60, 411
MspR9I CCNGG 3 cut(s) 60, 412, 690
MunI CAATTG 2 cut(s) 386, 789
MvaI CCWGG 1 cut(s) 690
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 3 cut(s) 233, 242, 614
NciI CCSGG 2 cut(s) 60, 412
NdeII GATC 1 cut(s) 315
NlaIII CATG 4 cut(s) 139, 576, 762, 820
NlaIV GGNNCC 5 cut(s) 34, 116, 202, 718, 831
NmeAIII GCCGAG 1 cut(s) 102
NspV TTCGAA 2 cut(s) 143, 902
PaeR7I CTCGAG 1 cut(s) 884
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 2 cut(s) 373, 841
PfoI TCCNGGA 1 cut(s) 688
PkrI GCNGC 4 cut(s) 75, 108, 244, 619
PleI GAGTC 3 cut(s) 107, 693, 709
PpsI GAGTC 3 cut(s) 107, 693, 709
PshBI ATTAAT 1 cut(s) 480
Psp124BI GAGCTC 3 cut(s) 96, 171, 229
Psp6I CCWGG 1 cut(s) 688
PspGI CCWGG 1 cut(s) 688
PspN4I GGNNCC 5 cut(s) 34, 116, 202, 718, 831
PspPI GGNCC 2 cut(s) 256, 391
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SacI GAGCTC 3 cut(s) 96, 171, 229
SaqAI TTAA 2 cut(s) 360, 480
SatI GCNGC 4 cut(s) 74, 107, 243, 618
Sau3AI GATC 1 cut(s) 315
Sau96I GGNCC 2 cut(s) 256, 391
SchI GAGTC 3 cut(s) 108, 694, 710
ScrFI CCNGG 3 cut(s) 60, 412, 690
SduI GDGCHC 4 cut(s) 96, 171, 205, 229
SfaNI GCATC 3 cut(s) 219, 295, 744
Sfr274I CTCGAG 1 cut(s) 884
SfuI TTCGAA 2 cut(s) 143, 902
SinI GGWCC 2 cut(s) 256, 391
SlaI CTCGAG 1 cut(s) 884
SmlI CTYRAG 4 cut(s) 85, 526, 735, 884
SmoI CTYRAG 4 cut(s) 85, 526, 735, 884
Sse9I AATT 7 cut(s) 386, 468, 481, 509, 653, 789, 943
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 3 cut(s) 96, 171, 229
StyD4I CCNGG 3 cut(s) 58, 410, 688
StyI CCWWGG 2 cut(s) 587, 920
TaaI ACNGT 5 cut(s) 260, 291, 347, 370, 800
TaiI ACGT 1 cut(s) 629
TaqI TCGA 6 cut(s) 143, 286, 636, 699, 885, 902
TasI AATT 7 cut(s) 386, 468, 481, 509, 653, 789, 943
TfiI GAWTC 2 cut(s) 373, 841
Tru1I TTAA 2 cut(s) 360, 480
Tru9I TTAA 2 cut(s) 360, 480
TscAI CASTG 5 cut(s) 187, 276, 373, 501, 805
TseI GCWGC 4 cut(s) 73, 106, 242, 617
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 5 cut(s) 187, 276, 373, 501, 805
VpaK11BI GGWCC 2 cut(s) 256, 391
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 2 cut(s) 509, 653
XhoI CTCGAG 1 cut(s) 884
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.