Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008986

Physical Location & Seq

Genomic Coordinates Reverse (-)

9057636 .. 9059526

Gene Structure 1891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG106100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTCATGAATTTGAATCACAAGGTGTTGAACATAGTAGTGCCTCTAGTAACACTCACTGGATTGGTTTTCTTTCTACCACCCTTTCTGATTTACAAGTTTCTCTGTTTCGTATATCGATCCAAATCCATTGAAAATGTCGCTGGAAAAGTCGTCCTCATCACCGGAGCATCTTCAGGAATTGGCGAGCATTTGGCTTATGAGTATGGTAGGAAAGGAGCCCGTTTGGCATTGGCAGCCAGAAGAGAGGACCGTCTTCGTGCAGTGGTGGATAAAGCTCGACGGTTAGGGTCTCCTGATGCCATTATGATCCTAGCTGATGTTTCAAAGCTTGAAGACTGTAACCGACTTGTTAATAGCACTGTGAATCACTTTGGTCAATTGGACCATTTGGTGAACAATGCCGGGATTACACAAGCTGGATTGTTTGAAGATTGTAATGAGTTCTCTTATCTGAAATCAATTATGGACATTAATTTCTGGGGGTCAGTGTATTGCACCAAATTTGCAGTTCCATACTTAAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCAACATGGTTTTCTATACCAAGGTTGAGTTTCTACAATGCAAGCAAGGCAGCCCAGACGTGCTTCTTCGAGACATTGAGGGCTGAATTTGGTTCTGATATGGGGATTACGATTGTGAGTCCTGGAGTGGTCGAGTCTGAAATGACAGGAACCCCCCAGTTTCAATCTCAAGTTGGTTCAGATATGATGCCATGTCAGTCAACAGAAGTGTGCGCGAAGGCAATTGTGGACAGTGCTTGCCGTGGAGACATGGACTTGATGGAGCCGTCTTGGATTCGGGTCGCATTTTGGCTTAGGGTTCTCTGTCCTCAGCTACTCGAGAGCATTACCCATTCGAACTCAATCAAAAGGCCAAGGACTACCTCAAACAAAGATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

313

Amino Acids

34.75

Weight (kDa)

8.81

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	46 - 238	4.3e-06	SDR-like rossmann domain
adh_short	PF00106	50 - 237	6e-46	short chain dehydrogenase
KR	PF08659	52 - 215	6.2e-10	KR domain
adh_short_C2	PF13561	56 - 240	1.8e-31	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca	FvH4_5g08710
malus_domestica	MD14G1152900.v1.1
prunus_persica	Prupe.5G148000_v2.0.a1
pyrus_communis	pycom14g12740
rosa_chinensis	RchiOBHm_Chr7g0189561
rosa_laevigata	RLG00000004600
rosa_multiflora	Rmu_sc0001924.1_g000013
rosa_roxburghii	Rroxscaffold_3G00265300
rosa_rugosa	Rorug06G0499000
rosa_samantha	Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana	Rw7G008980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	776
AclWI	GGATC	2 cut(s)	114, 304
AcsI	RAATTY	3 cut(s)	10, 503, 647
AcuI	CTGAAG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	25
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	7 cut(s)	16, 31, 134, 327, 335, 431, 725
AjiI	CACGTC	1 cut(s)	621
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	5 cut(s)	278, 317, 331, 419, 874
AluI	AGCT	5 cut(s)	278, 317, 331, 419, 874
Alw26I	GTCTC	3 cut(s)	297, 626, 801
AlwI	GGATC	2 cut(s)	114, 304
Ama87I	CYCGRG	1 cut(s)	878
AoxI	GGCC	1 cut(s)	911
ApeKI	GCWGC	2 cut(s)	236, 611
ApoI	RAATTY	3 cut(s)	10, 503, 647
AseI	ATTAAT	1 cut(s)	474
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	2 cut(s)	250, 385
AsuC2I	CCSGG	1 cut(s)	406
AsuHPI	GGTGA	2 cut(s)	154, 406
AsuII	TTCGAA	1 cut(s)	896
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	2 cut(s)	250, 385
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	2 cut(s)	248, 342
BbvCI	CCTCAGC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	248, 623
BccI	CCATC	1 cut(s)	814
BceAI	ACGGC	2 cut(s)	786, 811
BciT130I	CCWGG	1 cut(s)	684
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	297, 626, 801
BfaI	CTAG	2 cut(s)	47, 314
BfrI	CTTAAG	1 cut(s)	520
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	237, 612
BlsI	GCNGC	2 cut(s)	238, 613
Bme1390I	CCNGG	2 cut(s)	406, 684
Bme18I	GGWCC	2 cut(s)	250, 385
BmeT110I	CYCGRG	1 cut(s)	878
BmgBI	CACGTC	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	250, 385
BmiI	GGNNCC	3 cut(s)	220, 712, 825
BmrFI	CCNGG	2 cut(s)	406, 684
BmrI	ACTGGG	1 cut(s)	712
BmsI	GCATC	3 cut(s)	179, 289, 738
BmuI	ACTGGG	1 cut(s)	712
BpiI	GAAGAC	2 cut(s)	248, 342
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	2 cut(s)	854, 870
Bpu14I	TTCGAA	1 cut(s)	896
BpuEI	CTTGAG	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	3 cut(s)	581, 802, 914
BsaWI	WCCGGW	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	64, 718
Bse8I	GATNNNNATC	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	581, 802, 914
BseJI	GATNNNNATC	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	884
BseNI	ACTGG	2 cut(s)	64, 718
BseXI	GCAGC	2 cut(s)	248, 623
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	776
BshFI	GGCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	878
BsiSI	CCGG	2 cut(s)	165, 405
BsmAI	GTCTC	3 cut(s)	297, 626, 801
BsnI	GGCC	1 cut(s)	913
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	878
Bsp119I	TTCGAA	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	119, 309
BspANI	GGCC	1 cut(s)	913
BspCNI	CTCAG	1 cut(s)	883
BspDI	ATCGAT	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	776
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	220, 712, 825
BspPI	GGATC	2 cut(s)	114, 304
BspT104I	TTCGAA	1 cut(s)	896
BspTI	CTTAAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	64, 718
BssECI	CCNNGG	3 cut(s)	581, 802, 914
BssMI	GATC	2 cut(s)	119, 309
BssT1I	CCWWGG	2 cut(s)	581, 914
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	5 cut(s)	254, 285, 341, 364, 794
Bst6I	CTCTTC	1 cut(s)	238
BstAFI	CTTAAG	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	896
BstC8I	GCNNGC	3 cut(s)	188, 604, 799
BstDEI	CTNAG	2 cut(s)	854, 870
BstDSI	CCRYGG	1 cut(s)	802
BstFNI	CGCG	1 cut(s)	776
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	2 cut(s)	122, 312
BstMAI	GTCTC	3 cut(s)	297, 626, 801
BstMBI	GATC	2 cut(s)	119, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 236, 608
BstNI	CCWGG	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	404, 682
BstUI	CGCG	1 cut(s)	776
BstV1I	GCAGC	2 cut(s)	248, 623
BstV2I	GAAGAC	2 cut(s)	248, 342
Bsu15I	ATCGAT	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	913
BsuTUI	ATCGAT	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	802
BtrI	CACGTC	1 cut(s)	621
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	5 cut(s)	57, 270, 360, 495, 799
Cac8I	GCNNGC	3 cut(s)	188, 604, 799
CciI	TCATGA	1 cut(s)	6
CfoI	GCGC	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	250, 385
ClaI	ATCGAT	1 cut(s)	118
CviAII	CATG	4 cut(s)	7, 567, 753, 811
DdeI	CTNAG	2 cut(s)	854, 870
DpnI	GATC	2 cut(s)	121, 311
DpnII	GATC	2 cut(s)	119, 309
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	581, 914
Eco24I	GRGCYC	1 cut(s)	223
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	250, 385
Eco57I	CTGAAG	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	581, 914
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	581, 914
FaeI	CATG	4 cut(s)	10, 570, 756, 814
FatI	CATG	4 cut(s)	6, 566, 752, 810
Fnu4HI	GCNGC	2 cut(s)	237, 612
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	237, 612
FspBI	CTAG	2 cut(s)	47, 314
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	2 cut(s)	237, 612
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	1 cut(s)	913
HapII	CCGG	2 cut(s)	165, 405
HhaI	GCGC	1 cut(s)	776
Hin1II	CATG	4 cut(s)	10, 570, 756, 814
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	5 cut(s)	16, 367, 679, 695, 835
HpaII	CCGG	2 cut(s)	165, 405
HphI	GGTGA	2 cut(s)	154, 406
Hpy166II	GTNNAC	3 cut(s)	397, 762, 790
Hpy188I	TCNGA	5 cut(s)	90, 456, 658, 700, 742
Hpy188III	TCNNGA	5 cut(s)	7, 177, 296, 631, 880
Hpy8I	GTNNAC	3 cut(s)	397, 762, 790
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	5 cut(s)	254, 285, 341, 364, 794
HpyCH4IV	ACGT	1 cut(s)	620
HpyCH4V	TGCA	5 cut(s)	263, 498, 509, 563, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 236, 608
HpyF3I	CTNAG	2 cut(s)	854, 870
HpySE526I	ACGT	1 cut(s)	620
Hsp92II	CATG	4 cut(s)	10, 570, 756, 814
HspAI	GCGC	1 cut(s)	774
Kzo9I	GATC	2 cut(s)	119, 309
LmnI	GCTCC	3 cut(s)	167, 218, 823
Lsp1109I	GCAGC	2 cut(s)	248, 623
LweI	GCATC	3 cut(s)	179, 289, 738
MaeI	CTAG	2 cut(s)	47, 314
MaeII	ACGT	1 cut(s)	620
MaeIII	GTNAC	2 cut(s)	49, 341
MalI	GATC	2 cut(s)	121, 311
MboI	GATC	2 cut(s)	119, 309
MboII	GAAGA	7 cut(s)	165, 248, 255, 347, 443, 546, 619
MfeI	CAATTG	2 cut(s)	380, 783
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	9 cut(s)	10, 180, 380, 462, 475, 503, 647, 783, 937
MlyI	GAGTC	2 cut(s)	688, 704
MnlI	CCTC	6 cut(s)	54, 167, 241, 633, 879, 934
MseI	TTAA	3 cut(s)	354, 474, 521
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	2 cut(s)	165, 405
MspR9I	CCNGG	2 cut(s)	406, 684
MunI	CAATTG	2 cut(s)	380, 783
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	776
MwoI	GCNNNNNNNGC	3 cut(s)	227, 236, 608
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	119, 309
NlaIII	CATG	4 cut(s)	10, 570, 756, 814
NlaIV	GGNNCC	3 cut(s)	220, 712, 825
NspV	TTCGAA	1 cut(s)	896
PaeR7I	CTCGAG	1 cut(s)	878
PagI	TCATGA	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	16, 367, 835
PfoI	TCCNGGA	1 cut(s)	682
PkrI	GCNGC	2 cut(s)	238, 613
PleI	GAGTC	2 cut(s)	687, 703
PpsI	GAGTC	2 cut(s)	687, 703
PshBI	ATTAAT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	3 cut(s)	220, 712, 825
PspPI	GGNCC	2 cut(s)	250, 385
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	354, 474, 521
SatI	GCNGC	2 cut(s)	237, 612
Sau3AI	GATC	2 cut(s)	119, 309
Sau96I	GGNCC	2 cut(s)	250, 385
SchI	GAGTC	2 cut(s)	688, 704
ScrFI	CCNGG	2 cut(s)	406, 684
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	9 cut(s)	27, 280, 319, 333, 421, 587, 623, 876, 926
SfaNI	GCATC	3 cut(s)	179, 289, 738
Sfr274I	CTCGAG	1 cut(s)	878
SfuI	TTCGAA	1 cut(s)	896
SinI	GGWCC	2 cut(s)	250, 385
SlaI	CTCGAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	3 cut(s)	520, 729, 878
SmoI	CTYRAG	3 cut(s)	520, 729, 878
Sse9I	AATT	9 cut(s)	10, 180, 380, 462, 475, 503, 647, 783, 937
SspMI	CTAG	2 cut(s)	47, 314
StyD4I	CCNGG	2 cut(s)	404, 682
StyI	CCWWGG	2 cut(s)	581, 914
TaaI	ACNGT	5 cut(s)	254, 285, 341, 364, 794
TaiI	ACGT	1 cut(s)	623
TaqI	TCGA	6 cut(s)	118, 280, 630, 693, 879, 896
TasI	AATT	9 cut(s)	10, 180, 380, 462, 475, 503, 647, 783, 937
TfiI	GAWTC	3 cut(s)	16, 367, 835
Tru1I	TTAA	3 cut(s)	354, 474, 521
Tru9I	TTAA	3 cut(s)	354, 474, 521
TscAI	CASTG	5 cut(s)	64, 270, 367, 495, 799
TseI	GCWGC	2 cut(s)	236, 611
TspDTI	ATGAA	2 cut(s)	23, 546
TspRI	CASTG	5 cut(s)	64, 270, 367, 495, 799
Vha464I	CTTAAG	1 cut(s)	520
VpaK11BI	GGWCC	2 cut(s)	250, 385
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	3 cut(s)	10, 503, 647
XhoI	CTCGAG	1 cut(s)	878
XspI	CTAG	2 cut(s)	47, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.