MD14G1152900.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0008986
Physical Location & Seq
Reverse (-)
24698894 .. 24701458
2565 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1152900.v1.1.491

Sequence Viewer

Length: 540 bp
ATGTCTCAAAACTTGAACATTGCAATCGAGTTGTTAATGAAACAGTCAATCACTTTGGCCAATGACATAAATTTCTGGGGTTCTGTTTATTGCACACATTTCTCAGTTCCACACCTCAGAAAAAGCAAAGGGAAAATTGTTGTAATTTCCTTGAGTGCATCTTGGTTTTCTACACCAAAGTTGAGTTTCGACATTGCAAGCAAAGCAGCCCTGACATGCTTCTTTGAGTCATTGAGGGCTGAGTTGGGATCTGAGATTGGGATAACAATTGTGAGTCCTGGAGTGATTGAGTCGGAGATAACAGGAAGCCGCCAATTTGTATCGCAGCTTCGTTCGAAGTTGACGCCCAGTGAGTCCACAGAAAAATGTACAAAGGCAATTGTGGACAGTGTTTGCCGTGGAGACAGGCATCTGACAGAGCCATCGTGGGTCAGGTTCGGATTTTGGTTGAGGGTTTTGTATCCCGAGCTACTCGAGAAGCTTTTCCATCTAATAGTTGAAACCAAGAAGATGCCAGCCACTTCAAATAAGGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

180

Amino Acids

20.07

Weight (kDa)

8.69

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short_C2 PF13561 13 - 110 7.3e-09 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 17 - 103 4.1e-11 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 3 cut(s) 16, 500, 525
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 328, 469, 481
AluI AGCT 3 cut(s) 328, 469, 481
Alw26I GTCTC 2 cut(s) 9, 396
AlwI GGATC 1 cut(s) 256
Ama87I CYCGRG 2 cut(s) 464, 473
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 206, 325
ApoI RAATTY 1 cut(s) 70
Asp700I GAANNNNTTC 1 cut(s) 482
AsuII TTCGAA 1 cut(s) 335
AvaI CYCGRG 2 cut(s) 464, 473
BalI TGGCCA 1 cut(s) 59
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbvI GCAGC 2 cut(s) 218, 337
BccI CCATC 2 cut(s) 430, 495
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 279
BciVI GTATCC 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 9, 396
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 3 cut(s) 207, 310, 326
BlsI GCNGC 3 cut(s) 208, 311, 327
Bme1390I CCNGG 1 cut(s) 279
BmeT110I CYCGRG 2 cut(s) 464, 473
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 342
BmsI GCATC 3 cut(s) 167, 418, 501
BmuI ACTGGG 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 300
Bpu14I TTCGAA 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 348
Bse3DI GCAATG 2 cut(s) 18, 192
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 538
BseMI GCAATG 2 cut(s) 18, 192
BseMII CTCAG 4 cut(s) 117, 130, 231, 243
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 218, 337
BshFI GGCC 1 cut(s) 59
BsiHKCI CYCGRG 2 cut(s) 464, 473
BsmAI GTCTC 2 cut(s) 9, 396
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 2 cut(s) 464, 473
Bsp119I TTCGAA 1 cut(s) 335
Bsp1407I TGTACA 1 cut(s) 368
Bsp143I GATC 1 cut(s) 248
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 4 cut(s) 116, 129, 232, 244
BspPI GGATC 1 cut(s) 256
BspT104I TTCGAA 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 18, 192
BsrGI TGTACA 1 cut(s) 368
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 1 cut(s) 248
BssNI GRCGYC 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 45, 389
BstACI GRCGYC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 199, 516
BstDEI CTNAG 4 cut(s) 103, 116, 240, 252
BstDSI CCRYGG 1 cut(s) 397
BstF5I GGATG 1 cut(s) 538
BstKTI GATC 1 cut(s) 251
BstMAI GTCTC 2 cut(s) 9, 396
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 218, 337
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 2 cut(s) 355, 394
Cac8I GCNNGC 2 cut(s) 199, 516
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 216
CviJI RGCY 9 cut(s) 59, 209, 239, 309, 328, 421, 469, 481, 518
CviKI_1 RGCY 9 cut(s) 59, 209, 239, 309, 328, 421, 469, 481, 518
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 4 cut(s) 103, 116, 240, 252
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
EaeI YGGCCR 1 cut(s) 57
Eco88I CYCGRG 2 cut(s) 464, 473
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 1 cut(s) 219
FaiI YATR 2 cut(s) 68, 217
FatI CATG 1 cut(s) 215
Fnu4HI GCNGC 3 cut(s) 207, 310, 326
Fsp4HI GCNGC 3 cut(s) 207, 310, 326
GluI GCNGC 3 cut(s) 207, 310, 326
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 1 cut(s) 59
HgaI GACGC 1 cut(s) 352
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 219
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 4 cut(s) 227, 274, 290, 353
Hpy166II GTNNAC 3 cut(s) 342, 357, 385
Hpy188I TCNGA 5 cut(s) 119, 253, 295, 414, 440
Hpy188III TCNNGA 2 cut(s) 464, 475
Hpy8I GTNNAC 3 cut(s) 342, 357, 385
HpyCH4III ACNGT 2 cut(s) 45, 389
HpyCH4V TGCA 4 cut(s) 23, 93, 158, 197
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 4 cut(s) 103, 116, 240, 252
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 219
Kzo9I GATC 1 cut(s) 248
LpnPI CCDG 9 cut(s) 61, 224, 264, 288, 291, 361, 391, 418, 528
Lsp1109I GCAGC 2 cut(s) 218, 337
LweI GCATC 3 cut(s) 167, 418, 501
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 1 cut(s) 520
MfeI CAATTG 2 cut(s) 267, 378
MflI RGATCY 1 cut(s) 248
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 6 cut(s) 70, 135, 144, 267, 314, 378
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 4 cut(s) 236, 283, 299, 362
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 3 cut(s) 125, 228, 444
Mox20I TGGCCA 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 482
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 35, 538
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 2 cut(s) 267, 378
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 248
NlaIII CATG 1 cut(s) 219
NspI RCATGY 1 cut(s) 219
NspV TTCGAA 1 cut(s) 335
PaeR7I CTCGAG 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 482
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 3 cut(s) 208, 311, 327
PleI GAGTC 4 cut(s) 235, 282, 298, 361
PpsI GAGTC 4 cut(s) 235, 282, 298, 361
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SaqAI TTAA 2 cut(s) 35, 538
SatI GCNGC 3 cut(s) 207, 310, 326
Sau3AI GATC 1 cut(s) 248
SchI GAGTC 4 cut(s) 236, 283, 299, 362
ScrFI CCNGG 1 cut(s) 279
SetI ASST 5 cut(s) 117, 330, 437, 471, 483
SfaNI GCATC 3 cut(s) 167, 418, 501
Sfr274I CTCGAG 1 cut(s) 473
SfuI TTCGAA 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 151, 473
SmoI CTYRAG 2 cut(s) 151, 473
Sse9I AATT 6 cut(s) 70, 135, 144, 267, 314, 378
SsiI CCGC 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 45, 389
TaqI TCGA 4 cut(s) 27, 189, 335, 474
TasI AATT 6 cut(s) 70, 135, 144, 267, 314, 378
TatI WGTACW 1 cut(s) 368
TauI GCSGC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 35, 538
Tru9I TTAA 2 cut(s) 35, 538
TscAI CASTG 2 cut(s) 355, 394
TseI GCWGC 2 cut(s) 206, 325
TspDTI ATGAA 1 cut(s) 53
TspRI CASTG 2 cut(s) 355, 394
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 219
XhoI CTCGAG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.