RLG00000004600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008986
Physical Location & Seq
Forward (+)
60633327 .. 60635241
1915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004600

Sequence Viewer

Length: 909 bp
ATGAATTTGAATCACAAGGTGTTGAACATAGTAGTGCCTCTAATAACACTCACTGGATTGGTTTTCTTTCTGCCACCCTTTCTGATTTACAAGTTTCTCTGTTTTGTATATCGATCCAAATCCATTGAAAATGTCGCTGGAAAAGTTGTCCTCATCACCGGAGCATCTTCAGGAATTGGCGAGCATTTGGCTTATGAGTATGGTAGGAAAGGAGCTCGTTTGGCATTGGCAGCCAGAAGAGGGGACCGTCTTCGAGCAGTGGTGGATAAAGCTCGACGGTTAGGGTCTCCTGATGCCATTATGATCCTAGCTGATGTCTCAAAGCTTGAAGACTGTAACCGACTTGTTAATGACACTGTGAATCACTTTGGTCAATTGGACCATTTGGTGAACAATGCCGGGATTACACAAGCTGGATTGTTTGAAGATTGTAATGAGTTCTCTTATCTGAAATCAATTATGGACATTAATTTCTGGGGGTCAGTGTACTGCACCAAATTTGCAGTTCCATACTTAAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCAACATGGTTTTCTACACCAAGGTTGAGTTTCTACAATGCAAGCAAGGCAGCCCAGACGTGCTTCTTCGAGACATTAAGGGCTGAATTAGGTTCTGATATGGGGATTACGATTGTGAGTCCTGGAGTGGTCGAGTCTGAAATGACAGTAACCCCCCAGTTTCAATCTCAATCAACAGAAGTGTGCGCGAAGGCAATTGTGGACAGTGCTTGCCGTGGAGACATGGACTTGATGGAGCCGTCTTGGATTCGGGTCGCATTTTGGCTTAGGGTTCTCTGTCCTCAGCTACTCGAGAGCATTACCCATTCGAACTCAATCAAAAGGCAAAGGACTACCTCAAACAAAGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

303

Amino Acids

33.57

Weight (kDa)

8.98

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 44 - 236 4.3e-06 SDR-like rossmann domain
adh_short PF00106 48 - 235 1.1e-45 short chain dehydrogenase
KR PF08659 50 - 213 2.7e-10 KR domain
adh_short_C2 PF13561 54 - 250 2.9e-31 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 743
AclWI GGATC 2 cut(s) 108, 298
AcsI RAATTY 2 cut(s) 4, 497
AcuI CTGAAG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 240
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 6 cut(s) 10, 25, 128, 329, 425, 719
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 6 cut(s) 215, 272, 311, 325, 413, 841
AluI AGCT 6 cut(s) 215, 272, 311, 325, 413, 841
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 4 cut(s) 291, 322, 620, 768
AlwI GGATC 2 cut(s) 108, 298
Ama87I CYCGRG 1 cut(s) 845
ApeKI GCWGC 2 cut(s) 230, 605
ApoI RAATTY 2 cut(s) 4, 497
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 743
AspS9I GGNCC 2 cut(s) 244, 379
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 148, 400
AsuII TTCGAA 1 cut(s) 863
AvaI CYCGRG 1 cut(s) 845
AvaII GGWCC 2 cut(s) 244, 379
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 242, 336
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 2 cut(s) 242, 617
BccI CCATC 1 cut(s) 781
BceAI ACGGC 2 cut(s) 753, 778
BciT130I CCWGG 1 cut(s) 678
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 4 cut(s) 291, 322, 620, 768
BfaI CTAG 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 514
BisI GCNGC 2 cut(s) 231, 606
BlsI GCNGC 2 cut(s) 232, 607
Bme1390I CCNGG 2 cut(s) 400, 678
Bme18I GGWCC 2 cut(s) 244, 379
BmeT110I CYCGRG 1 cut(s) 845
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 244, 379
BmiI GGNNCC 2 cut(s) 245, 792
BmrFI CCNGG 2 cut(s) 400, 678
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 2 cut(s) 173, 283
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 2 cut(s) 242, 336
BpmI CTGGAG 1 cut(s) 699
Bpu10I CCTNAGC 2 cut(s) 821, 837
Bpu14I TTCGAA 1 cut(s) 863
BpuMI CCSGG 1 cut(s) 400
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 575, 769
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 58, 712
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 575, 769
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 851
BseNI ACTGG 2 cut(s) 58, 712
BseXI GCAGC 2 cut(s) 242, 617
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 743
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 845
BsiSI CCGG 2 cut(s) 159, 399
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 4 cut(s) 291, 322, 620, 768
BsmFI GGGAC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 845
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 113, 303
BspCNI CTCAG 1 cut(s) 850
BspDI ATCGAT 1 cut(s) 112
BspFNI CGCG 1 cut(s) 743
BspLI GGNNCC 2 cut(s) 245, 792
BspPI GGATC 2 cut(s) 108, 298
BspT104I TTCGAA 1 cut(s) 863
BspTI CTTAAG 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 291
BsrI ACTGG 2 cut(s) 58, 712
BssECI CCNNGG 2 cut(s) 575, 769
BssMI GATC 2 cut(s) 113, 303
BssT1I CCWWGG 1 cut(s) 575
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 6 cut(s) 248, 279, 335, 358, 703, 761
Bst6I CTCTTC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 514
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 3 cut(s) 182, 598, 766
BstDEI CTNAG 2 cut(s) 821, 837
BstDSI CCRYGG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 743
BstHHI GCGC 1 cut(s) 743
BstKTI GATC 2 cut(s) 116, 306
BstMAI GTCTC 4 cut(s) 291, 322, 620, 768
BstMBI GATC 2 cut(s) 113, 303
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 602
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 398, 676
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 2 cut(s) 242, 617
BstV2I GAAGAC 2 cut(s) 242, 336
Bsu15I ATCGAT 1 cut(s) 112
BsuTUI ATCGAT 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 769
BtrI CACGTC 1 cut(s) 615
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 5 cut(s) 51, 264, 354, 489, 766
Cac8I GCNNGC 3 cut(s) 182, 598, 766
CfoI GCGC 1 cut(s) 743
Cfr13I GGNCC 2 cut(s) 244, 379
ClaI ATCGAT 1 cut(s) 112
Csp6I GTAC 1 cut(s) 487
CviAII CATG 2 cut(s) 561, 778
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 2 cut(s) 821, 837
DpnI GATC 2 cut(s) 115, 305
DpnII GATC 2 cut(s) 113, 303
DraIII CACNNNGTG 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 244, 379
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 845
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 575
FaeI CATG 2 cut(s) 564, 781
FaqI GGGAC 1 cut(s) 257
FatI CATG 2 cut(s) 560, 777
Fnu4HI GCNGC 2 cut(s) 231, 606
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 231, 606
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 742
GluI GCNGC 2 cut(s) 231, 606
GsuI CTGGAG 1 cut(s) 699
HapII CCGG 2 cut(s) 159, 399
HhaI GCGC 1 cut(s) 743
Hin1II CATG 2 cut(s) 564, 781
Hin6I GCGC 1 cut(s) 741
HinP1I GCGC 1 cut(s) 741
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 5 cut(s) 10, 361, 673, 689, 802
HpaII CCGG 2 cut(s) 159, 399
HphI GGTGA 2 cut(s) 148, 400
Hpy166II GTNNAC 3 cut(s) 391, 487, 757
Hpy188I TCNGA 4 cut(s) 84, 450, 652, 694
Hpy188III TCNNGA 4 cut(s) 171, 290, 625, 847
Hpy8I GTNNAC 3 cut(s) 391, 487, 757
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 739
HpyCH4III ACNGT 6 cut(s) 248, 279, 335, 358, 703, 761
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 4 cut(s) 492, 503, 557, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 602
HpyF3I CTNAG 2 cut(s) 821, 837
HpySE526I ACGT 1 cut(s) 614
Hsp92II CATG 2 cut(s) 564, 781
HspAI GCGC 1 cut(s) 741
Kzo9I GATC 2 cut(s) 113, 303
LmnI GCTCC 3 cut(s) 161, 212, 790
Lsp1109I GCAGC 2 cut(s) 242, 617
LweI GCATC 2 cut(s) 173, 283
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 2 cut(s) 335, 703
MalI GATC 2 cut(s) 115, 305
MboI GATC 2 cut(s) 113, 303
MboII GAAGA 7 cut(s) 159, 242, 249, 341, 437, 540, 613
MfeI CAATTG 2 cut(s) 374, 750
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 750, 904
MlyI GAGTC 2 cut(s) 682, 698
MnlI CCTC 5 cut(s) 48, 161, 233, 846, 901
MseI TTAA 4 cut(s) 348, 468, 515, 632
MslI CAYNNNNRTG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 2 cut(s) 159, 399
MspR9I CCNGG 2 cut(s) 400, 678
MunI CAATTG 2 cut(s) 374, 750
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 602
NciI CCSGG 1 cut(s) 400
NdeII GATC 2 cut(s) 113, 303
NlaIII CATG 2 cut(s) 564, 781
NlaIV GGNNCC 2 cut(s) 245, 792
NspV TTCGAA 1 cut(s) 863
PaeR7I CTCGAG 1 cut(s) 845
PfeI GAWTC 3 cut(s) 10, 361, 802
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 2 cut(s) 232, 607
PleI GAGTC 2 cut(s) 681, 697
PpsI GAGTC 2 cut(s) 681, 697
PshBI ATTAAT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 245, 792
PspPI GGNCC 2 cut(s) 244, 379
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 4 cut(s) 348, 468, 515, 632
SatI GCNGC 2 cut(s) 231, 606
Sau3AI GATC 2 cut(s) 113, 303
Sau96I GGNCC 2 cut(s) 244, 379
SchI GAGTC 2 cut(s) 682, 698
ScrFI CCNGG 2 cut(s) 400, 678
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 2 cut(s) 173, 283
Sfr274I CTCGAG 1 cut(s) 845
SfuI TTCGAA 1 cut(s) 863
SinI GGWCC 2 cut(s) 244, 379
SlaI CTCGAG 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 2 cut(s) 514, 845
SmoI CTYRAG 2 cut(s) 514, 845
Sse9I AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 750, 904
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 398, 676
StyI CCWWGG 1 cut(s) 575
TaaI ACNGT 6 cut(s) 248, 279, 335, 358, 703, 761
TaiI ACGT 1 cut(s) 617
TaqI TCGA 7 cut(s) 112, 253, 274, 624, 687, 846, 863
TasI AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 750, 904
TatI WGTACW 1 cut(s) 486
TfiI GAWTC 3 cut(s) 10, 361, 802
Tru1I TTAA 4 cut(s) 348, 468, 515, 632
Tru9I TTAA 4 cut(s) 348, 468, 515, 632
TscAI CASTG 5 cut(s) 58, 264, 361, 489, 766
TseI GCWGC 2 cut(s) 230, 605
TspDTI ATGAA 2 cut(s) 17, 540
TspRI CASTG 5 cut(s) 58, 264, 361, 489, 766
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 244, 379
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 4, 497
XhoI CTCGAG 1 cut(s) 845
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.