Rw7G008980

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0008986
Physical Location & Seq
Reverse (-)
8389314 .. 8390718
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008980.1

Sequence Viewer

Length: 657 bp
ATGGTCATGAATTTGAATCACAAGGTGTTGAACATAGTAGTGCCTCTAGTAACACTCACTGGATTGGTTTTCTTTCTACCACCCTTTCTGATTTACAAGTTTCTCTGTTTCGTATATCGATCCAAATCCATTGAAAATGTCGCTGGAAAAGTCGTCCTCATCACCGGAGCATCTTCAGGAATTGGCGAGCATTTGGCTTATGAGTATGGTAGGAAAGGAGCCCGTTTGGCATTGGCAGCCAGAAGAGAGGACCGTCTTCGTGCAGTGGTGGATAAAGCTCGACGGTTAGGGTCTCCTGATGCCATTATGATCCTAGCTGATGTTTCAAAGCTTGAAGACTGTAACCGACTTGTTAATAGCACTGTGAATCACTTTGGTCAATTGGACCATTTGGTGAACAATGCCGGGATTACACAAGCTGGATTGTTTGAAGATTGTAATGAGTTCTCTTATCTGAAATCAATTATGGACATTAATTTCTGGGGGTCAGTGTATTGCACCAAATTTGCAGTTCCATACTTAAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCAACATGGTTTTCTATACCAAGGTTGAGTTTCTACAATGTAAGAAAAGGGTCTCGTAGCATGCATACTCTTTTTATTTATGTTATTAATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

218

Amino Acids

24.52

Weight (kDa)

9.69

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 50 - 203 1.7e-36 short chain dehydrogenase
KR PF08659 52 - 199 1.7e-08 KR domain
adh_short_C2 PF13561 56 - 205 3.1e-26 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 114, 304
AcsI RAATTY 2 cut(s) 10, 503
AcuI CTGAAG 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 25
AflII CTTAAG 1 cut(s) 520
AgsI TTSAA 6 cut(s) 16, 31, 134, 327, 335, 431
AluBI AGCT 4 cut(s) 278, 317, 331, 419
AluI AGCT 4 cut(s) 278, 317, 331, 419
Alw26I GTCTC 2 cut(s) 297, 618
AlwI GGATC 2 cut(s) 114, 304
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 10, 503
AseI ATTAAT 2 cut(s) 474, 648
AspS9I GGNCC 2 cut(s) 250, 385
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 154, 406
AvaII GGWCC 2 cut(s) 250, 385
BanII GRGCYC 1 cut(s) 223
BbsI GAAGAC 2 cut(s) 248, 342
BbvI GCAGC 1 cut(s) 248
BcnI CCSGG 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 297, 618
BfaI CTAG 3 cut(s) 47, 314, 655
BfrI CTTAAG 1 cut(s) 520
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bme1390I CCNGG 1 cut(s) 406
Bme18I GGWCC 2 cut(s) 250, 385
BmgT120I GGNCC 2 cut(s) 250, 385
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 179, 289
BpiI GAAGAC 2 cut(s) 248, 342
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 124
BsaI GGTCTC 2 cut(s) 297, 618
BsaJI CCNNGG 1 cut(s) 581
BsaWI WCCGGW 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 64
Bse8I GATNNNNATC 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 581
BseJI GATNNNNATC 1 cut(s) 124
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 282
BshVI ATCGAT 1 cut(s) 118
BsiSI CCGG 2 cut(s) 165, 405
BsmAI GTCTC 2 cut(s) 297, 618
Bso31I GGTCTC 2 cut(s) 297, 618
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 2 cut(s) 119, 309
BspDI ATCGAT 1 cut(s) 118
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 220
BspPI GGATC 2 cut(s) 114, 304
BspTI CTTAAG 1 cut(s) 520
BspTNI GGTCTC 2 cut(s) 297, 618
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 2 cut(s) 119, 309
BssT1I CCWWGG 1 cut(s) 581
Bst4CI ACNGT 4 cut(s) 254, 285, 341, 364
Bst6I CTCTTC 1 cut(s) 238
BstAFI CTTAAG 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 188, 623
BstKTI GATC 2 cut(s) 122, 312
BstMAI GTCTC 2 cut(s) 297, 618
BstMBI GATC 2 cut(s) 119, 309
BstMWI GCNNNNNNNGC 2 cut(s) 227, 236
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 2 cut(s) 248, 342
Bsu15I ATCGAT 1 cut(s) 118
BsuTUI ATCGAT 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 4 cut(s) 57, 270, 360, 495
Cac8I GCNNGC 2 cut(s) 188, 623
CciI TCATGA 1 cut(s) 6
Cfr13I GGNCC 2 cut(s) 250, 385
ClaI ATCGAT 1 cut(s) 118
CviAII CATG 3 cut(s) 7, 567, 622
CviJI RGCY 7 cut(s) 197, 221, 239, 278, 317, 331, 419
CviKI_1 RGCY 7 cut(s) 197, 221, 239, 278, 317, 331, 419
DpnI GATC 2 cut(s) 121, 311
DpnII GATC 2 cut(s) 119, 309
DraIII CACNNNGTG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 223
Eco31I GGTCTC 2 cut(s) 297, 618
Eco47I GGWCC 2 cut(s) 250, 385
Eco57I CTGAAG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 581
EcoT22I ATGCAT 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 3 cut(s) 10, 570, 625
FatI CATG 3 cut(s) 6, 566, 621
Fnu4HI GCNGC 1 cut(s) 237
FriOI GRGCYC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 3 cut(s) 47, 314, 655
GluI GCNGC 1 cut(s) 237
HapII CCGG 2 cut(s) 165, 405
Hin1II CATG 3 cut(s) 10, 570, 625
HindIII AAGCTT 1 cut(s) 329
HinfI GANTC 2 cut(s) 16, 367
HpaII CCGG 2 cut(s) 165, 405
HphI GGTGA 2 cut(s) 154, 406
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 2 cut(s) 90, 456
Hpy188III TCNNGA 3 cut(s) 7, 177, 296
Hpy8I GTNNAC 1 cut(s) 397
Hpy99I CGWCG 1 cut(s) 285
HpyCH4III ACNGT 4 cut(s) 254, 285, 341, 364
HpyCH4V TGCA 5 cut(s) 263, 498, 509, 563, 625
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 236
Hsp92II CATG 3 cut(s) 10, 570, 625
Kzo9I GATC 2 cut(s) 119, 309
LmnI GCTCC 2 cut(s) 167, 218
LpnPI CCDG 9 cut(s) 45, 129, 162, 178, 253, 309, 405, 418, 466
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 2 cut(s) 179, 289
MaeI CTAG 3 cut(s) 47, 314, 655
MaeIII GTNAC 2 cut(s) 49, 341
MalI GATC 2 cut(s) 121, 311
MboI GATC 2 cut(s) 119, 309
MboII GAAGA 6 cut(s) 165, 248, 255, 347, 443, 546
MfeI CAATTG 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 7 cut(s) 10, 180, 380, 462, 475, 503, 649
MnlI CCTC 3 cut(s) 54, 167, 241
Mph1103I ATGCAT 1 cut(s) 627
MseI TTAA 4 cut(s) 354, 474, 521, 648
MslI CAYNNNNRTG 1 cut(s) 38
MspCI CTTAAG 1 cut(s) 520
MspI CCGG 2 cut(s) 165, 405
MspR9I CCNGG 1 cut(s) 406
MunI CAATTG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 227, 236
NciI CCSGG 1 cut(s) 406
NdeII GATC 2 cut(s) 119, 309
NlaIII CATG 3 cut(s) 10, 570, 625
NlaIV GGNNCC 1 cut(s) 220
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 625
PaeI GCATGC 1 cut(s) 625
PagI TCATGA 1 cut(s) 6
PfeI GAWTC 2 cut(s) 16, 367
PkrI GCNGC 1 cut(s) 238
PshBI ATTAAT 2 cut(s) 474, 648
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 250, 385
RseI CAYNNNNRTG 1 cut(s) 38
SaqAI TTAA 4 cut(s) 354, 474, 521, 648
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 119, 309
Sau96I GGNCC 2 cut(s) 250, 385
ScrFI CCNGG 1 cut(s) 406
SduI GDGCHC 1 cut(s) 223
SetI ASST 6 cut(s) 27, 280, 319, 333, 421, 587
SfaNI GCATC 2 cut(s) 179, 289
SinI GGWCC 2 cut(s) 250, 385
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
SphI GCATGC 1 cut(s) 625
Sse9I AATT 7 cut(s) 10, 180, 380, 462, 475, 503, 649
SspMI CTAG 3 cut(s) 47, 314, 655
StyD4I CCNGG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 4 cut(s) 254, 285, 341, 364
TaqI TCGA 2 cut(s) 118, 280
TasI AATT 7 cut(s) 10, 180, 380, 462, 475, 503, 649
TfiI GAWTC 2 cut(s) 16, 367
Tru1I TTAA 4 cut(s) 354, 474, 521, 648
Tru9I TTAA 4 cut(s) 354, 474, 521, 648
TscAI CASTG 4 cut(s) 64, 270, 367, 495
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 23, 546
TspRI CASTG 4 cut(s) 64, 270, 367, 495
Vha464I CTTAAG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 250, 385
VspI ATTAAT 2 cut(s) 474, 648
XapI RAATTY 2 cut(s) 10, 503
XceI RCATGY 1 cut(s) 625
XspI CTAG 3 cut(s) 47, 314, 655
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.