pycom14g12740

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0008986
Physical Location & Seq
Reverse (-)
15740247 .. 15746642
6396 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g12740.2

Sequence Viewer

Length: 939 bp
ATGGATTCGATTCACAAAGTGTTGAACGTAGTCGTCCCTCTAGTAACATTCATTGGATCCCTTTTCTTTCTCCCATATTTTCTCGTTTACAAGCTTATTAGTTTCATATATCGATCCAAATCCACTGAAAACATAGCCGGAAAAGTTATCCTCATTACCGGAGCGTCTTCAGGAATTGGAGAGCATTTGGCGTATGAGTACGCTAAGAGAGGAGCCCGTCTAGCATTGGCAGCCAGAAGGGAGGACCGTCTTCGTGCCGTGGCGGATAAAGCTCGACGGATAGGCTCCCCGGATGTCATTGTGCTTCCAGCTGATGTCTCAAAACTGGAACATTGCAATCGAGTTGTTAATGAAACAGTCAATCACTTTGGCCAATTGGACCATTTGGTGAACAATGCTGCGGTTCTGCAAGTTAGCTTGTTTGAAGATTGCAACCAAATCTCTACGATGGTTTCAATTATGGATATAAATTTCTGGGGTTCTGTTTATTGCACACATTTCTCAGTTCCACACCTCAGAAAAAGCAAAGGGAAAATTGTTGTAATTTCCTCGAGTGAATCTTGGTTTTCTGCACCAAAGTCGAGTTTCTACAATGCAAGCAAAGCAGCCCTGACATGCTTCTTTGAGTCATTGAGGTCTGAGTTGGGATCTGAGATTGGGATAACAATTGTGAGTCCTGGACTGATTGAGTCGGAAATGACAAGAAGCCGCCAATTTGTATCGCAGCTTCGTCCGAAGTGGATGCCCAGTGAGTCCGCAGAAAAATGCACAAAGGCAATTTTGGACAGTGTTTGCCGTGGAGACATGCATCTGACAGAGCCATCGTGGATCAGGTTCGGATTTTGGTTGAGGGTTTTGTATCCTGAGCTACTCGAGAAGCTTTTCCATCTAATAGTTGAAACCAAGAAGATGCCAGCCACTCCAAATAAGGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

313

Amino Acids

35.06

Weight (kDa)

8.95

Isoelectric Point (pI)

53.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 263, 401, 709, 756
AclWI GGATC 5 cut(s) 51, 64, 108, 655, 836
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 4 cut(s) 25, 425, 456, 899
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 7 cut(s) 94, 272, 311, 417, 727, 868, 880
AluI AGCT 7 cut(s) 94, 272, 311, 417, 727, 868, 880
Alw26I GTCTC 2 cut(s) 322, 795
AlwI GGATC 5 cut(s) 51, 64, 108, 655, 836
Ama87I CYCGRG 2 cut(s) 550, 872
AoxI GGCC 1 cut(s) 370
ApeKI GCWGC 4 cut(s) 230, 398, 605, 724
ApoI RAATTY 1 cut(s) 469
Asp700I GAANNNNTTC 1 cut(s) 881
AspS9I GGNCC 2 cut(s) 244, 379
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 2 cut(s) 550, 872
AvaII GGWCC 2 cut(s) 244, 379
BalI TGGCCA 1 cut(s) 372
BamHI GGATCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 711, 743
BbsI GAAGAC 2 cut(s) 159, 242
BbvI GCAGC 4 cut(s) 242, 385, 617, 736
BccI CCATC 3 cut(s) 442, 829, 894
BceAI ACGGC 2 cut(s) 242, 780
BcgI CGANNNNNNTGC 4 cut(s) 561, 595, 724, 758
BciT130I CCWGG 1 cut(s) 678
BciVI GTATCC 1 cut(s) 870
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 322, 795
BfaI CTAG 2 cut(s) 41, 221
BfuI GTATCC 1 cut(s) 870
BisI GCNGC 5 cut(s) 231, 399, 606, 709, 725
BlsI GCNGC 5 cut(s) 232, 400, 607, 710, 726
Bme1390I CCNGG 2 cut(s) 290, 678
Bme18I GGWCC 2 cut(s) 244, 379
BmeT110I CYCGRG 2 cut(s) 550, 872
BmgT120I GGNCC 2 cut(s) 244, 379
BmiI GGNNCC 3 cut(s) 58, 214, 286
BmrFI CCNGG 2 cut(s) 290, 678
BmrI ACTGGG 1 cut(s) 741
BmsI GCATC 3 cut(s) 732, 817, 900
BmuI ACTGGG 1 cut(s) 741
BpiI GAAGAC 2 cut(s) 159, 242
Bpu10I CCTNAGC 1 cut(s) 864
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 258, 288, 796
BsaWI WCCGGW 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 330, 747
Bse3DI GCAATG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 258, 288, 796
BseGI GGATG 3 cut(s) 298, 747, 937
BseJI GATNNNNATC 1 cut(s) 118
BseMI GCAATG 1 cut(s) 331
BseMII CTCAG 5 cut(s) 516, 529, 630, 642, 855
BseNI ACTGG 2 cut(s) 330, 747
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 4 cut(s) 242, 385, 617, 736
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 1 cut(s) 372
BshVI ATCGAT 1 cut(s) 112
BsiHKCI CYCGRG 2 cut(s) 550, 872
BsiSI CCGG 3 cut(s) 138, 159, 290
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 322, 795
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 372
BsoBI CYCGRG 2 cut(s) 550, 872
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 56, 113, 647, 828
BspACI CCGC 4 cut(s) 263, 401, 709, 756
BspANI GGCC 1 cut(s) 372
BspCNI CTCAG 5 cut(s) 515, 528, 631, 643, 856
BspDI ATCGAT 1 cut(s) 112
BspLI GGNNCC 3 cut(s) 58, 214, 286
BspPI GGATC 5 cut(s) 51, 64, 108, 655, 836
BsrDI GCAATG 1 cut(s) 331
BsrI ACTGG 2 cut(s) 330, 747
BssECI CCNNGG 3 cut(s) 258, 288, 796
BssMI GATC 4 cut(s) 56, 113, 647, 828
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 3 cut(s) 248, 358, 788
BstC8I GCNNGC 2 cut(s) 598, 915
BstDEI CTNAG 6 cut(s) 204, 502, 515, 639, 651, 864
BstDSI CCRYGG 2 cut(s) 258, 796
BstF5I GGATG 3 cut(s) 298, 747, 937
BstKTI GATC 4 cut(s) 59, 116, 650, 831
BstMAI GTCTC 2 cut(s) 322, 795
BstMBI GATC 4 cut(s) 56, 113, 647, 828
BstMWI GCNNNNNNNGC 4 cut(s) 221, 230, 269, 602
BstNI CCWGG 1 cut(s) 678
BstNSI RCATGY 2 cut(s) 618, 808
BstSCI CCNGG 2 cut(s) 288, 676
BstV1I GCAGC 4 cut(s) 242, 385, 617, 736
BstV2I GAAGAC 2 cut(s) 159, 242
BstX2I RGATCY 2 cut(s) 56, 647
BstYI RGATCY 2 cut(s) 56, 647
Bsu15I ATCGAT 1 cut(s) 112
BsuI GTATCC 1 cut(s) 870
BsuRI GGCC 1 cut(s) 372
BsuTUI ATCGAT 1 cut(s) 112
BtgI CCRYGG 2 cut(s) 258, 796
BtsCI GGATG 3 cut(s) 298, 747, 937
BtsIMutI CAGTG 3 cut(s) 123, 754, 793
Cac8I GCNNGC 2 cut(s) 598, 915
Cfr13I GGNCC 2 cut(s) 244, 379
ClaI ATCGAT 1 cut(s) 112
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 615, 805
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 6 cut(s) 204, 502, 515, 639, 651, 864
DpnI GATC 4 cut(s) 58, 115, 649, 830
DpnII GATC 4 cut(s) 56, 113, 647, 828
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 370
EciI GGCGGA 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 244, 379
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 2 cut(s) 550, 872
EcoRII CCWGG 1 cut(s) 676
EcoT22I ATGCAT 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 2 cut(s) 618, 808
FaiI YATR 9 cut(s) 76, 107, 109, 134, 195, 461, 467, 616, 806
FaqI GGGAC 1 cut(s) 20
FatI CATG 2 cut(s) 614, 804
Fnu4HI GCNGC 5 cut(s) 231, 399, 606, 709, 725
FokI GGATG 2 cut(s) 305, 754
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 231, 399, 606, 709, 725
FspBI CTAG 2 cut(s) 41, 221
GluI GCNGC 5 cut(s) 231, 399, 606, 709, 725
HaeIII GGCC 1 cut(s) 372
HapII CCGG 3 cut(s) 138, 159, 290
HgaI GACGC 1 cut(s) 153
Hin1II CATG 2 cut(s) 618, 808
HindIII AAGCTT 2 cut(s) 92, 878
HinfI GANTC 7 cut(s) 5, 10, 557, 626, 673, 689, 752
HpaII CCGG 3 cut(s) 138, 159, 290
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 88, 391
Hpy188I TCNGA 7 cut(s) 518, 640, 652, 694, 735, 813, 839
Hpy188III TCNNGA 3 cut(s) 171, 863, 874
Hpy8I GTNNAC 2 cut(s) 88, 391
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 3 cut(s) 248, 358, 788
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 8 cut(s) 336, 409, 432, 492, 572, 596, 768, 808
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 230, 269, 602
HpyF3I CTNAG 6 cut(s) 204, 502, 515, 639, 651, 864
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 618, 808
Kzo9I GATC 4 cut(s) 56, 113, 647, 828
LmnI GCTCC 3 cut(s) 161, 212, 290
Lsp1109I GCAGC 4 cut(s) 242, 385, 617, 736
LweI GCATC 3 cut(s) 732, 817, 900
MaeI CTAG 2 cut(s) 41, 221
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 43
MalI GATC 4 cut(s) 58, 115, 649, 830
MboI GATC 4 cut(s) 56, 113, 647, 828
MboII GAAGA 4 cut(s) 159, 242, 437, 919
MfeI CAATTG 2 cut(s) 374, 666
MflI RGATCY 2 cut(s) 56, 647
MhlI GDGCHC 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 9 cut(s) 174, 374, 456, 469, 534, 543, 666, 713, 777
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 4 cut(s) 635, 682, 698, 761
MmeI TCCRAC 1 cut(s) 672
MnlI CCTC 8 cut(s) 48, 161, 203, 235, 524, 559, 627, 843
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 1 cut(s) 810
MroXI GAANNNNTTC 1 cut(s) 881
MscI TGGCCA 1 cut(s) 372
MseI TTAA 2 cut(s) 348, 937
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 3 cut(s) 138, 159, 290
MspR9I CCNGG 2 cut(s) 290, 678
MunI CAATTG 2 cut(s) 374, 666
MvaI CCWGG 1 cut(s) 678
MwoI GCNNNNNNNGC 4 cut(s) 221, 230, 269, 602
NciI CCSGG 1 cut(s) 290
NdeII GATC 4 cut(s) 56, 113, 647, 828
NlaIII CATG 2 cut(s) 618, 808
NlaIV GGNNCC 3 cut(s) 58, 214, 286
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 2 cut(s) 618, 808
PaeR7I CTCGAG 2 cut(s) 550, 872
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 5, 10, 557
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 5 cut(s) 232, 400, 607, 710, 726
PleI GAGTC 4 cut(s) 634, 681, 697, 760
PpsI GAGTC 4 cut(s) 634, 681, 697, 760
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 3 cut(s) 58, 214, 286
PspPI GGNCC 2 cut(s) 244, 379
PspXI VCTCGAGB 1 cut(s) 550
PsuI RGATCY 2 cut(s) 56, 647
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 348, 937
SatI GCNGC 5 cut(s) 231, 399, 606, 709, 725
Sau3AI GATC 4 cut(s) 56, 113, 647, 828
Sau96I GGNCC 2 cut(s) 244, 379
SchI GAGTC 4 cut(s) 635, 682, 698, 761
ScrFI CCNGG 2 cut(s) 290, 678
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 3 cut(s) 732, 817, 900
Sfr274I CTCGAG 2 cut(s) 550, 872
SinI GGWCC 2 cut(s) 244, 379
SlaI CTCGAG 2 cut(s) 550, 872
SmlI CTYRAG 2 cut(s) 550, 872
SmoI CTYRAG 2 cut(s) 550, 872
Sse9I AATT 9 cut(s) 174, 374, 456, 469, 534, 543, 666, 713, 777
SsiI CCGC 4 cut(s) 263, 401, 709, 756
SspMI CTAG 2 cut(s) 41, 221
StyD4I CCNGG 2 cut(s) 288, 676
TaaI ACNGT 3 cut(s) 248, 358, 788
TaiI ACGT 1 cut(s) 30
TaqI TCGA 7 cut(s) 8, 112, 274, 340, 551, 581, 873
TasI AATT 9 cut(s) 174, 374, 456, 469, 534, 543, 666, 713, 777
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 3 cut(s) 5, 10, 557
Tru1I TTAA 2 cut(s) 348, 937
Tru9I TTAA 2 cut(s) 348, 937
TscAI CASTG 3 cut(s) 130, 754, 793
TseI GCWGC 4 cut(s) 230, 398, 605, 724
TspDTI ATGAA 3 cut(s) 40, 94, 366
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 3 cut(s) 130, 754, 793
VpaK11BI GGWCC 2 cut(s) 244, 379
XapI RAATTY 1 cut(s) 469
XceI RCATGY 2 cut(s) 618, 808
XhoI CTCGAG 2 cut(s) 550, 872
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 2 cut(s) 41, 221
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.