FvH4_5g08710

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008986
Physical Location & Seq
Forward (+)
4995020 .. 4995726
707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08710.t1

Sequence Viewer

Length: 345 bp
ATGCAACTACTCCAAAAGCATTTGGCTTATGAGTATGGTAGGAGAGGAGCTCGTTTGGCATTGGCAGCCAGAAGAGAGGACCGTCTTTTTGAAGTGGTGGATAAAGCTCGACGGCTCGGCTCTCCTGATGCCATTATGATCCTAGCTGATGTTTCCAAGCTTGAAGACTGCAACCGACTTGTTAATGACACTGTGAATCACTTTGGTCAATTGTATTGCACCAAATTTGCAATTCCATACTTGAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCCACATGGTTTTCTACACCAAGGTTGAGTTTCTACAACGTAAGAAATGGGTCTCGTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

10.14

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 7 - 71 3e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 224
AfaI GTAC 1 cut(s) 340
AgsI TTSAA 2 cut(s) 92, 164
AluBI AGCT 4 cut(s) 50, 107, 146, 160
AluI AGCT 4 cut(s) 50, 107, 146, 160
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 71, 103
AspS9I GGNCC 1 cut(s) 79
AvaII GGWCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 143
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 171
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpuEI CTTGAG 1 cut(s) 262
BsaI GGTCTC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 339
Bso31I GGTCTC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 138
BspPI GGATC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 83, 193
Bst6I CTCTTC 1 cut(s) 67
BstDEI CTNAG 1 cut(s) 342
BstKTI GATC 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 138
BstMWI GCNNNNNNNGC 2 cut(s) 56, 65
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 1 cut(s) 339
CviAII CATG 1 cut(s) 288
CviJI RGCY 8 cut(s) 26, 50, 68, 107, 115, 120, 146, 160
CviKI_1 RGCY 8 cut(s) 26, 50, 68, 107, 115, 120, 146, 160
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 1 cut(s) 342
DpnI GATC 1 cut(s) 140
DpnII GATC 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 1 cut(s) 291
FaiI YATR 5 cut(s) 30, 36, 137, 238, 289
FatI CATG 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 66
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 291
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 83, 193
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 4 cut(s) 4, 171, 219, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 65
HpyF3I CTNAG 1 cut(s) 342
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 1 cut(s) 291
Kzo9I GATC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 2 cut(s) 82, 138
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 321
MalI GATC 1 cut(s) 140
MboI GATC 1 cut(s) 138
MboII GAAGA 3 cut(s) 84, 176, 267
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 52
MluCI AATT 3 cut(s) 209, 224, 231
MnlI CCTC 2 cut(s) 38, 70
MseI TTAA 1 cut(s) 183
MunI CAATTG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 56, 65
NdeII GATC 1 cut(s) 138
NlaIII CATG 1 cut(s) 291
NmeAIII GCCGAG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 79
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
SacI GAGCTC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 79
SduI GDGCHC 1 cut(s) 52
SetI ASST 6 cut(s) 52, 109, 148, 162, 308, 324
SfaNI GCATC 1 cut(s) 118
SinI GGWCC 1 cut(s) 79
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 3 cut(s) 209, 224, 231
SspMI CTAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 52
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 83, 193
TaiI ACGT 1 cut(s) 324
TaqI TCGA 1 cut(s) 109
TasI AATT 3 cut(s) 209, 224, 231
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 196
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 267
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 224
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.