Rmu_sc0001924.1_g000013

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001924.1
OG0008986
Physical Location & Seq
Reverse (-)
70444 .. 72115
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001924.1_g000013.1.cds

Sequence Viewer

Length: 702 bp
atgtcgctggaaaagtcgtcctcatcaccggagcatcttcaggaattggcgaggaaaggagcccgtttggcattggcagccagaagagaggaccgtcttcgtgcagtggtggataaagctcgacggttagggtctcctgatgccattatgatcctagctgatgtttcaaagcttgaagactgtaaccgacttgttaatagcactgtgaatcactttggtcaattggaccatttggtgaacaatgccgggattacacaagctggattgtttgaagattgtaatgagttctcttatctgaaatcaattatggacattaatttctgggggtcagtgtattgcaccaaatttgcagttccatacttaagaaaaagcaaaggcaagattgttgtgatttcttcatctgcaacatggttttctataccaaggttgagtttctacaatgcaagcaaggcagcccagacgtgcttcttcgagacattgagggctgaatttggttctgatatggggattacgattgtgagtcctggagtggtcgagtctgaaatgacaggaaccccccagtttcaatctcaagtaggttggttcagatatgatgccatgtcagtcaacagaagtgtgcgcgaaggcaattgtggacagtgcttgccgtggagacatggacttgatggagccgtcttggattcgggtcgcattttggcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

233

Amino Acids

25.8

Weight (kDa)

8.54

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 621
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 344, 488
AcuI CTGAAG 1 cut(s) 23
AflII CTTAAG 1 cut(s) 361
AgsI TTSAA 4 cut(s) 168, 176, 272, 566
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 1 cut(s) 523
AluBI AGCT 4 cut(s) 119, 158, 172, 260
AluI AGCT 4 cut(s) 119, 158, 172, 260
Alw26I GTCTC 3 cut(s) 138, 467, 646
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 77, 452
ApoI RAATTY 2 cut(s) 344, 488
AseI ATTAAT 1 cut(s) 315
AspLEI GCGC 1 cut(s) 621
AspS9I GGNCC 2 cut(s) 91, 226
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 18, 247
AvaII GGWCC 2 cut(s) 91, 226
BanII GRGCYC 1 cut(s) 64
BbsI GAAGAC 2 cut(s) 89, 183
BbvI GCAGC 2 cut(s) 89, 464
BccI CCATC 1 cut(s) 659
BceAI ACGGC 2 cut(s) 631, 656
BciT130I CCWGG 1 cut(s) 525
BcnI CCSGG 1 cut(s) 247
BcoDI GTCTC 3 cut(s) 138, 467, 646
BfaI CTAG 1 cut(s) 155
BfrI CTTAAG 1 cut(s) 361
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 78, 453
BlsI GCNGC 2 cut(s) 79, 454
Bme1390I CCNGG 2 cut(s) 247, 525
Bme18I GGWCC 2 cut(s) 91, 226
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 91, 226
BmiI GGNNCC 3 cut(s) 61, 553, 670
BmrFI CCNGG 2 cut(s) 247, 525
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 3 cut(s) 43, 130, 583
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 2 cut(s) 89, 183
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 555
BpuMI CCSGG 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 422, 647
BsaWI WCCGGW 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 422, 647
BseNI ACTGG 1 cut(s) 559
BseXI GCAGC 2 cut(s) 89, 464
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 621
BsiSI CCGG 2 cut(s) 29, 246
BsmAI GTCTC 3 cut(s) 138, 467, 646
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 150
BspFNI CGCG 1 cut(s) 621
BspLI GGNNCC 3 cut(s) 61, 553, 670
BspPI GGATC 1 cut(s) 145
BspTI CTTAAG 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 2 cut(s) 422, 647
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 422
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 5 cut(s) 95, 126, 182, 205, 639
Bst6I CTCTTC 1 cut(s) 79
BstAFI CTTAAG 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 445, 644
BstDEI CTNAG 1 cut(s) 699
BstDSI CCRYGG 1 cut(s) 647
BstFNI CGCG 1 cut(s) 621
BstHHI GCGC 1 cut(s) 621
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 3 cut(s) 138, 467, 646
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 449
BstNI CCWGG 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 245, 523
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 2 cut(s) 89, 464
BstV2I GAAGAC 2 cut(s) 89, 183
BtgI CCRYGG 1 cut(s) 647
BtrI CACGTC 1 cut(s) 462
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 4 cut(s) 111, 201, 336, 644
Cac8I GCNNGC 2 cut(s) 445, 644
CfoI GCGC 1 cut(s) 621
Cfr13I GGNCC 2 cut(s) 91, 226
CviAII CATG 3 cut(s) 408, 598, 656
DdeI CTNAG 1 cut(s) 699
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 64
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 2 cut(s) 91, 226
Eco57I CTGAAG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 3 cut(s) 411, 601, 659
FaiI YATR 9 cut(s) 149, 308, 358, 409, 419, 503, 591, 599, 657
FatI CATG 3 cut(s) 407, 597, 655
Fnu4HI GCNGC 2 cut(s) 78, 453
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 78, 453
FspBI CTAG 1 cut(s) 155
GlaI GCGC 1 cut(s) 620
GluI GCNGC 2 cut(s) 78, 453
GsuI CTGGAG 1 cut(s) 546
HapII CCGG 2 cut(s) 29, 246
HhaI GCGC 1 cut(s) 621
Hin1II CATG 3 cut(s) 411, 601, 659
Hin6I GCGC 1 cut(s) 619
HinP1I GCGC 1 cut(s) 619
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 4 cut(s) 208, 520, 536, 680
HpaII CCGG 2 cut(s) 29, 246
HphI GGTGA 2 cut(s) 18, 247
Hpy166II GTNNAC 3 cut(s) 238, 607, 635
Hpy188I TCNGA 4 cut(s) 297, 499, 541, 587
Hpy188III TCNNGA 3 cut(s) 41, 137, 472
Hpy8I GTNNAC 3 cut(s) 238, 607, 635
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 617
HpyCH4III ACNGT 5 cut(s) 95, 126, 182, 205, 639
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 5 cut(s) 104, 339, 350, 404, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 449
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 3 cut(s) 411, 601, 659
HspAI GCGC 1 cut(s) 619
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 3 cut(s) 31, 59, 668
Lsp1109I GCAGC 2 cut(s) 89, 464
LweI GCATC 3 cut(s) 43, 130, 583
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 7 cut(s) 29, 89, 96, 188, 284, 387, 460
MfeI CAATTG 2 cut(s) 221, 628
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 7 cut(s) 44, 221, 303, 316, 344, 488, 628
MlyI GAGTC 2 cut(s) 529, 545
MnlI CCTC 4 cut(s) 31, 45, 82, 474
MseI TTAA 3 cut(s) 195, 315, 362
MspCI CTTAAG 1 cut(s) 361
MspI CCGG 2 cut(s) 29, 246
MspR9I CCNGG 2 cut(s) 247, 525
MunI CAATTG 2 cut(s) 221, 628
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 449
NciI CCSGG 1 cut(s) 247
NdeII GATC 1 cut(s) 150
NlaIII CATG 3 cut(s) 411, 601, 659
NlaIV GGNNCC 3 cut(s) 61, 553, 670
PfeI GAWTC 2 cut(s) 208, 680
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 2 cut(s) 79, 454
PleI GAGTC 2 cut(s) 528, 544
PpsI GAGTC 2 cut(s) 528, 544
PshBI ATTAAT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 3 cut(s) 61, 553, 670
PspPI GGNCC 2 cut(s) 91, 226
SaqAI TTAA 3 cut(s) 195, 315, 362
SatI GCNGC 2 cut(s) 78, 453
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 91, 226
SchI GAGTC 2 cut(s) 529, 545
ScrFI CCNGG 2 cut(s) 247, 525
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 121, 160, 174, 262, 428, 464, 580
SfaNI GCATC 3 cut(s) 43, 130, 583
SinI GGWCC 2 cut(s) 91, 226
SmlI CTYRAG 2 cut(s) 361, 570
SmoI CTYRAG 2 cut(s) 361, 570
Sse9I AATT 7 cut(s) 44, 221, 303, 316, 344, 488, 628
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 245, 523
StyI CCWWGG 1 cut(s) 422
TaaI ACNGT 5 cut(s) 95, 126, 182, 205, 639
TaiI ACGT 1 cut(s) 464
TaqI TCGA 3 cut(s) 121, 471, 534
TasI AATT 7 cut(s) 44, 221, 303, 316, 344, 488, 628
TfiI GAWTC 2 cut(s) 208, 680
Tru1I TTAA 3 cut(s) 195, 315, 362
Tru9I TTAA 3 cut(s) 195, 315, 362
TscAI CASTG 4 cut(s) 111, 208, 336, 644
TseI GCWGC 2 cut(s) 77, 452
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 4 cut(s) 111, 208, 336, 644
Vha464I CTTAAG 1 cut(s) 361
VpaK11BI GGWCC 2 cut(s) 91, 226
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 2 cut(s) 344, 488
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.