Prupe.5G148000_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
13544426 .. 13547561
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G148000.1

Sequence Viewer

Length: 945 bp
ATGGATTTGATTCACAAAGTGTTGAACGTAGCAGTCCCTCTACTAACATTCACTGGATTGCTTTTCTTTCTTCCACTTTTTCTCATTTACAAGTTTATTAGTTTCATGCGTCGATCAAAATCCATCGTAAACATGGCCGGCAAAGTTGTCCTCATCACCGGAGCATCTTCAGGTATCGGAGAGCATTTGGCATATGAGTATGCAAAGAGAGGAGCTCGTCTGGCGTTGGCAGCCAGACGAGAGGACCGCCTTCGGGCGGTGGCCGATAAAGCTCGAGGGCTAGGCTCTCCAGATGCCATTGTGCTCCCAGCTGATGTTTCAATTCTTGAACACTGCAATCGACTTGTTAATGAAACCGTCAATCACTTTGGCCAATTGGATCATTTGGTGAACAACGCCGGGGTTCTGCAAGCTGGCTCGTTTGAAGATTGGACACAAGGCCAATTCTCTAAGTTGGTTTCGATCATGGACATAAACTTCTGGGGTTCAGTCTATTGCACCCATTTCTCACTTCCACACTTGAGAAAAAGCAAAGGGAAGATTGTTGTAATTTCTTCATGTGCATCATGGTTTTCTGCACCAAAGTTTGGTTTCTACAATGCAAGCAAGGCAGCCCTGACTTGCTTCTTTGAGACATTGAGGGCTGAACTGGGATCTGATATTGGGATAACAATTGTGAGCCCAGGAGTGATTGAGTCTGAGATGATAGGAAGCAGCCAATTTTTATCACAGGTTCGTTCAAATTTGATGCCAAGTAAGTCAACAGAAGGGTGCACAAAGGCAATTGTGGACAGTGCTTGCCGTGGAGACATGTACCTCACAGAGCCAGCTTGGGTGAAGTTCGGACTCTGGTTGAGGGTTTTCTGCCCTGAGCTACTTGAGAAGCTTTTCCAGCTAATGGCAACGAAGAAGAACCCAGCAGGAACTTCAATTAAAGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

315

Amino Acids

34.58

Weight (kDa)

9.03

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0008986)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 587, 898
AciI CCGC 2 cut(s) 247, 257
AclWI GGATC 2 cut(s) 387, 661
AcoI YGGCCR 3 cut(s) 135, 261, 370
AcsI RAATTY 1 cut(s) 742
AcuI CTGAAG 1 cut(s) 153
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 4 cut(s) 253, 256, 587, 898
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 6 cut(s) 25, 321, 329, 425, 741, 930
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 8 cut(s) 215, 272, 311, 413, 830, 874, 886, 895
AluI AGCT 8 cut(s) 215, 272, 311, 413, 830, 874, 886, 895
Alw21I GWGCWC 3 cut(s) 217, 306, 776
Alw26I GTCTC 2 cut(s) 626, 801
Alw44I GTGCAC 1 cut(s) 772
AlwI GGATC 2 cut(s) 387, 661
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 4 cut(s) 135, 261, 370, 439
ApaLI GTGCAC 1 cut(s) 772
ApeKI GCWGC 3 cut(s) 230, 611, 714
ApoI RAATTY 1 cut(s) 742
Asp700I GAANNNNTTC 1 cut(s) 887
AspS9I GGNCC 1 cut(s) 244
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 148, 400, 847
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 372
BanII GRGCYC 2 cut(s) 217, 683
Bbv12I GWGCWC 3 cut(s) 217, 306, 776
BbvI GCAGC 3 cut(s) 242, 623, 726
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 786
BciT130I CCWGG 1 cut(s) 684
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 2 cut(s) 626, 801
BfaI CTAG 1 cut(s) 281
BisI GCNGC 3 cut(s) 231, 612, 715
BlsI GCNGC 3 cut(s) 232, 613, 716
Bme1390I CCNGG 2 cut(s) 400, 684
Bme18I GGWCC 1 cut(s) 244
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 400, 684
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 4 cut(s) 173, 283, 572, 738
BmuI ACTGGG 1 cut(s) 659
BplI GAGNNNNNCTC 2 cut(s) 199, 231
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 541, 899
BpuMI CCSGG 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 399, 682, 802
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 4 cut(s) 253, 256, 587, 898
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 58, 654
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 399, 682, 802
BseJI GATNNNNATC 1 cut(s) 118
BseLI CCNNNNNNNGG 4 cut(s) 253, 256, 587, 898
BseMII CTCAG 2 cut(s) 690, 861
BseNI ACTGG 2 cut(s) 58, 654
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 3 cut(s) 242, 623, 726
BseYI CCCAGC 2 cut(s) 307, 916
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 4 cut(s) 137, 263, 372, 441
BsiHKAI GWGCWC 3 cut(s) 217, 306, 776
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 3 cut(s) 138, 159, 399
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 4 cut(s) 253, 256, 587, 898
BsmAI GTCTC 2 cut(s) 626, 801
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 4 cut(s) 137, 263, 372, 441
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 4 cut(s) 217, 306, 683, 776
Bsp143I GATC 4 cut(s) 113, 379, 462, 653
BspACI CCGC 2 cut(s) 247, 257
BspANI GGCC 4 cut(s) 137, 263, 372, 441
BspCNI CTCAG 2 cut(s) 691, 862
BspPI GGATC 2 cut(s) 387, 661
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 2 cut(s) 58, 654
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 399, 682, 802
BssMI GATC 4 cut(s) 113, 379, 462, 653
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 2 cut(s) 358, 794
BstC8I GCNNGC 6 cut(s) 139, 411, 415, 604, 799, 828
BstDEI CTNAG 3 cut(s) 450, 699, 870
BstDSI CCRYGG 1 cut(s) 802
BstKTI GATC 4 cut(s) 116, 382, 465, 656
BstMAI GTCTC 2 cut(s) 626, 801
BstMBI GATC 4 cut(s) 113, 379, 462, 653
BstMWI GCNNNNNNNGC 5 cut(s) 221, 230, 269, 608, 892
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 2 cut(s) 398, 682
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 3 cut(s) 242, 623, 726
BstX2I RGATCY 1 cut(s) 653
BstYI RGATCY 1 cut(s) 653
BsuRI GGCC 4 cut(s) 137, 263, 372, 441
BtgI CCRYGG 1 cut(s) 802
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 3 cut(s) 51, 331, 799
Cac8I GCNNGC 6 cut(s) 139, 411, 415, 604, 799, 828
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 244
CseI GACGC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 814
CviAII CATG 6 cut(s) 106, 133, 466, 558, 567, 811
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 3 cut(s) 450, 699, 870
DpnI GATC 4 cut(s) 115, 381, 464, 655
DpnII GATC 4 cut(s) 113, 379, 462, 653
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 3 cut(s) 135, 261, 370
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 2 cut(s) 217, 683
Eco47I GGWCC 1 cut(s) 244
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 217, 683
FaeI CATG 6 cut(s) 109, 136, 469, 561, 570, 814
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 105, 132, 465, 557, 566, 810
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 231, 612, 715
FriOI GRGCYC 2 cut(s) 217, 683
Fsp4HI GCNGC 3 cut(s) 231, 612, 715
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 231, 612, 715
GsaI CCCAGC 2 cut(s) 311, 920
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 4 cut(s) 137, 263, 372, 441
HapII CCGG 3 cut(s) 138, 159, 399
HgaI GACGC 1 cut(s) 98
Hin1II CATG 6 cut(s) 109, 136, 469, 561, 570, 814
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 10, 695, 846
HpaII CCGG 3 cut(s) 138, 159, 399
HphI GGTGA 3 cut(s) 148, 400, 847
Hpy166II GTNNAC 5 cut(s) 130, 391, 762, 774, 790
Hpy188I TCNGA 4 cut(s) 179, 658, 700, 845
Hpy188III TCNNGA 2 cut(s) 290, 326
Hpy8I GTNNAC 5 cut(s) 130, 391, 762, 774, 790
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 260, 761
HpyCH4III ACNGT 2 cut(s) 358, 794
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 8 cut(s) 203, 336, 409, 498, 563, 578, 602, 774
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 230, 269, 608, 892
HpyF3I CTNAG 3 cut(s) 450, 699, 870
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 6 cut(s) 109, 136, 469, 561, 570, 814
KroI GCCGGC 1 cut(s) 137
KroNI GCCGGC 1 cut(s) 139
Kzo9I GATC 4 cut(s) 113, 379, 462, 653
LmnI GCTCC 3 cut(s) 161, 212, 309
Lsp1109I GCAGC 3 cut(s) 242, 623, 726
LweI GCATC 4 cut(s) 173, 283, 572, 738
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 115, 381, 464, 655
MboI GATC 4 cut(s) 113, 379, 462, 653
MboII GAAGA 7 cut(s) 62, 159, 437, 546, 550, 919, 922
MfeI CAATTG 3 cut(s) 374, 672, 783
MflI RGATCY 1 cut(s) 653
MhlI GDGCHC 4 cut(s) 217, 306, 683, 776
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 9 cut(s) 321, 374, 443, 549, 672, 719, 742, 783, 930
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 2 cut(s) 704, 840
MnlI CCTC 8 cut(s) 48, 161, 203, 235, 269, 633, 827, 849
Mox20I TGGCCA 1 cut(s) 372
MroNI GCCGGC 1 cut(s) 137
MroXI GAANNNNTTC 1 cut(s) 887
MscI TGGCCA 1 cut(s) 372
MseI TTAA 3 cut(s) 348, 933, 943
Msp20I TGGCCA 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 3 cut(s) 138, 159, 399
MspR9I CCNGG 2 cut(s) 400, 684
MunI CAATTG 3 cut(s) 374, 672, 783
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 5 cut(s) 221, 230, 269, 608, 892
NaeI GCCGGC 1 cut(s) 139
NciI CCSGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 193
NdeII GATC 4 cut(s) 113, 379, 462, 653
NgoMIV GCCGGC 1 cut(s) 137
NlaIII CATG 6 cut(s) 109, 136, 469, 561, 570, 814
NspI RCATGY 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 273
PciI ACATGT 1 cut(s) 810
PdiI GCCGGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 887
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 2 cut(s) 587, 898
PkrI GCNGC 3 cut(s) 232, 613, 716
PleI GAGTC 2 cut(s) 703, 840
PpsI GAGTC 2 cut(s) 703, 840
PscI ACATGT 1 cut(s) 810
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 682
PspFI CCCAGC 2 cut(s) 307, 916
PspGI CCWGG 1 cut(s) 682
PspPI GGNCC 1 cut(s) 244
PspXI VCTCGAGB 1 cut(s) 273
PsuI RGATCY 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 3 cut(s) 348, 933, 943
SatI GCNGC 3 cut(s) 231, 612, 715
Sau3AI GATC 4 cut(s) 113, 379, 462, 653
Sau96I GGNCC 1 cut(s) 244
SchI GAGTC 2 cut(s) 704, 840
ScrFI CCNGG 2 cut(s) 400, 684
SduI GDGCHC 4 cut(s) 217, 306, 683, 776
SfaNI GCATC 4 cut(s) 173, 283, 572, 738
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 273, 520, 878
SmoI CTYRAG 3 cut(s) 273, 520, 878
Sse9I AATT 9 cut(s) 321, 374, 443, 549, 672, 719, 742, 783, 930
SsiI CCGC 2 cut(s) 247, 257
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 398, 682
TaaI ACNGT 2 cut(s) 358, 794
TaiI ACGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 112, 274, 340, 461
TasI AATT 9 cut(s) 321, 374, 443, 549, 672, 719, 742, 783, 930
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 3 cut(s) 348, 933, 943
Tru9I TTAA 3 cut(s) 348, 933, 943
TscAI CASTG 3 cut(s) 58, 338, 799
TseI GCWGC 3 cut(s) 230, 611, 714
TspDTI ATGAA 3 cut(s) 94, 366, 546
TspRI CASTG 3 cut(s) 58, 338, 799
Van91I CCANNNNNTGG 2 cut(s) 587, 898
VneI GTGCAC 1 cut(s) 772
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 1 cut(s) 742
XceI RCATGY 1 cut(s) 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XhoI CTCGAG 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 887
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.