Rroxscaffold_3G00265300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008986
Physical Location & Seq
Forward (+)
58724073 .. 58725955
1883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265300.1

Sequence Viewer

Length: 936 bp
ATGAATTTGAATCACAAGGTCTTGAACATAGTAGTGCCTCTAATAACACTCACTGGATTGGTTTTCTTTCTGCCACCCTTTCTGATTTACAAGTTTCTCTGTTTCGTATATCGATCCAAATCCATTGAAAATGTCGCTGGAAAAGTTGTCCTCATCACCGGAGCATCTTCAGGAATTGGCGAGCATTTGGCTTATGAGTATGGTAGGAAAGGAGCTCGTTTGGCATTGGCAGCCAGAAGAGAGGACCGTCTTCGAGCAGTGGTGGATAAAGCTCGACGGTTAGGGTCTCCTGATGCCATTATGATCCTAGCTGATGTTTCAAAGCTTGAAGACTGTAACCGACTTGTTAATGACACTGTGAATCACTTTGGTCAATTGGACCATTTGGTGAACAATGCCGGGATTACACAAGCTGGATTGTTTGAAGATTGTAATGAGTTCTCTTATCTGAAATCAATTATGGACATTAATTTCTGGGGGTCAGTGTATTGCACCAAATTTGCAGTTCCATACTTAAGAAAAAGCAAAGGCAAGATTGTTGTGATTTCTTCATCTGCAACATGGTTTTCTACACCAAGGTTGAGTTTCTACAATGCAAGCAAGGCAGCCCAGACGTGCTTCTTCGAGACATTGAGGGCTGAATTAGGTTCTGATATGGGGATTACGATTGTGAGTCCTGGAGTGGTAGAGTCTGAAATGACAGGAACCCCCCAGTTTCAATCTCAAGTTGGTTCAGATATGATGCCATGTCAGTCAACAGAAGTGTGCGCGAAGGCAATTGTGGACAGTGCTTGCCGTGGAGACATGGACTCGATGGAGCCGTCTTGGATTCGGGTCGCATTTTGGCTTAGGGTTCTCTGTCCTCAGCTACTCGAGAGCATTACCCATTCGAACTCAATCAAAAGGCCAAGGACTACCTCAAACAAAGATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short

Protein Analysis

311

Amino Acids

34.49

Weight (kDa)

8.68

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 44 - 236 2.3e-06 SDR-like rossmann domain
adh_short PF00106 48 - 235 2.2e-46 short chain dehydrogenase
KR PF08659 50 - 213 2.6e-10 KR domain
adh_short_C2 PF13561 54 - 238 1.3e-31 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008986)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47350 AT3G47350 AT3G47350 AT3G47360 AT5G50590 AT5G50590 AT5G50690 AT5G50690
fragaria_vesca FvH4_5g08710
malus_domestica MD14G1152900.v1.1
prunus_persica Prupe.5G148000_v2.0.a1
pyrus_communis pycom14g12740
rosa_chinensis RchiOBHm_Chr7g0189561
rosa_laevigata RLG00000004600
rosa_multiflora Rmu_sc0001924.1_g000013
rosa_roxburghii Rroxscaffold_3G00265300
rosa_rugosa Rorug06G0499000
rosa_samantha Rh7AG104000 Rh7BG106700 Rh7CG108800 Rh7DG106100
rosa_wichuraiana Rw7G008980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 770
AclWI GGATC 2 cut(s) 108, 298
AcsI RAATTY 2 cut(s) 4, 497
AcuI CTGAAG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 514
AgsI TTSAA 7 cut(s) 10, 25, 128, 321, 329, 425, 719
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 676
AluBI AGCT 6 cut(s) 215, 272, 311, 325, 413, 868
AluI AGCT 6 cut(s) 215, 272, 311, 325, 413, 868
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 3 cut(s) 291, 620, 795
AlwI GGATC 2 cut(s) 108, 298
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 1 cut(s) 905
ApeKI GCWGC 2 cut(s) 230, 605
ApoI RAATTY 2 cut(s) 4, 497
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 1 cut(s) 770
AspS9I GGNCC 2 cut(s) 244, 379
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 2 cut(s) 148, 400
AsuII TTCGAA 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 2 cut(s) 244, 379
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 2 cut(s) 242, 336
Bbv12I GWGCWC 1 cut(s) 217
BbvCI CCTCAGC 1 cut(s) 864
BbvI GCAGC 2 cut(s) 242, 617
BccI CCATC 1 cut(s) 808
BceAI ACGGC 2 cut(s) 780, 805
BciT130I CCWGG 1 cut(s) 678
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 3 cut(s) 291, 620, 795
BfaI CTAG 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 514
BisI GCNGC 2 cut(s) 231, 606
BlsI GCNGC 2 cut(s) 232, 607
Bme1390I CCNGG 2 cut(s) 400, 678
Bme18I GGWCC 2 cut(s) 244, 379
BmeT110I CYCGRG 1 cut(s) 872
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 244, 379
BmiI GGNNCC 2 cut(s) 706, 819
BmrFI CCNGG 2 cut(s) 400, 678
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 3 cut(s) 173, 283, 732
BmuI ACTGGG 1 cut(s) 706
BpiI GAAGAC 2 cut(s) 242, 336
BpmI CTGGAG 1 cut(s) 699
Bpu10I CCTNAGC 2 cut(s) 848, 864
Bpu14I TTCGAA 1 cut(s) 890
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 400
Bsa29I ATCGAT 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 575, 796, 908
BsaWI WCCGGW 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 58, 712
Bse8I GATNNNNATC 1 cut(s) 118
BseBI CCWGG 1 cut(s) 678
BseCI ATCGAT 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 575, 796, 908
BseJI GATNNNNATC 1 cut(s) 118
BseMII CTCAG 1 cut(s) 878
BseNI ACTGG 2 cut(s) 58, 712
BseXI GCAGC 2 cut(s) 242, 617
Bsh1236I CGCG 1 cut(s) 770
BshFI GGCC 1 cut(s) 907
BshVI ATCGAT 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 2 cut(s) 159, 399
BsmAI GTCTC 3 cut(s) 291, 620, 795
BsnI GGCC 1 cut(s) 907
Bso31I GGTCTC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 872
Bsp119I TTCGAA 1 cut(s) 890
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 113, 303
BspANI GGCC 1 cut(s) 907
BspCNI CTCAG 1 cut(s) 877
BspDI ATCGAT 1 cut(s) 112
BspFNI CGCG 1 cut(s) 770
BspLI GGNNCC 2 cut(s) 706, 819
BspPI GGATC 2 cut(s) 108, 298
BspT104I TTCGAA 1 cut(s) 890
BspTI CTTAAG 1 cut(s) 514
BspTNI GGTCTC 1 cut(s) 291
BsrI ACTGG 2 cut(s) 58, 712
BssECI CCNNGG 3 cut(s) 575, 796, 908
BssMI GATC 2 cut(s) 113, 303
BssT1I CCWWGG 2 cut(s) 575, 908
Bst2UI CCWGG 1 cut(s) 678
Bst4CI ACNGT 5 cut(s) 248, 279, 335, 358, 788
Bst6I CTCTTC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 514
BstBI TTCGAA 1 cut(s) 890
BstC8I GCNNGC 3 cut(s) 182, 598, 793
BstDEI CTNAG 2 cut(s) 848, 864
BstDSI CCRYGG 1 cut(s) 796
BstFNI CGCG 1 cut(s) 770
BstHHI GCGC 1 cut(s) 770
BstKTI GATC 2 cut(s) 116, 306
BstMAI GTCTC 3 cut(s) 291, 620, 795
BstMBI GATC 2 cut(s) 113, 303
BstMWI GCNNNNNNNGC 3 cut(s) 221, 230, 602
BstNI CCWGG 1 cut(s) 678
BstSCI CCNGG 2 cut(s) 398, 676
BstUI CGCG 1 cut(s) 770
BstV1I GCAGC 2 cut(s) 242, 617
BstV2I GAAGAC 2 cut(s) 242, 336
Bsu15I ATCGAT 1 cut(s) 112
BsuRI GGCC 1 cut(s) 907
BsuTUI ATCGAT 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 796
BtrI CACGTC 1 cut(s) 615
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 5 cut(s) 51, 264, 354, 489, 793
Cac8I GCNNGC 3 cut(s) 182, 598, 793
CfoI GCGC 1 cut(s) 770
Cfr13I GGNCC 2 cut(s) 244, 379
ClaI ATCGAT 1 cut(s) 112
CviAII CATG 3 cut(s) 561, 747, 805
DdeI CTNAG 2 cut(s) 848, 864
DpnI GATC 2 cut(s) 115, 305
DpnII GATC 2 cut(s) 113, 303
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 2 cut(s) 575, 908
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 244, 379
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 872
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 676
EcoT14I CCWWGG 2 cut(s) 575, 908
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 2 cut(s) 575, 908
FaeI CATG 3 cut(s) 564, 750, 808
FatI CATG 3 cut(s) 560, 746, 804
Fnu4HI GCNGC 2 cut(s) 231, 606
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 231, 606
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 769
GluI GCNGC 2 cut(s) 231, 606
GsuI CTGGAG 1 cut(s) 699
HaeIII GGCC 1 cut(s) 907
HapII CCGG 2 cut(s) 159, 399
HhaI GCGC 1 cut(s) 770
Hin1II CATG 3 cut(s) 564, 750, 808
Hin6I GCGC 1 cut(s) 768
HinP1I GCGC 1 cut(s) 768
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 6 cut(s) 10, 361, 673, 689, 809, 829
HpaII CCGG 2 cut(s) 159, 399
HphI GGTGA 2 cut(s) 148, 400
Hpy166II GTNNAC 3 cut(s) 391, 756, 784
Hpy188I TCNGA 5 cut(s) 84, 450, 652, 694, 736
Hpy188III TCNNGA 5 cut(s) 22, 171, 290, 625, 874
Hpy8I GTNNAC 3 cut(s) 391, 756, 784
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 766
HpyCH4III ACNGT 5 cut(s) 248, 279, 335, 358, 788
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 4 cut(s) 492, 503, 557, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 230, 602
HpyF3I CTNAG 2 cut(s) 848, 864
HpySE526I ACGT 1 cut(s) 614
Hsp92II CATG 3 cut(s) 564, 750, 808
HspAI GCGC 1 cut(s) 768
Kzo9I GATC 2 cut(s) 113, 303
LmnI GCTCC 3 cut(s) 161, 212, 817
Lsp1109I GCAGC 2 cut(s) 242, 617
LweI GCATC 3 cut(s) 173, 283, 732
MaeI CTAG 1 cut(s) 308
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 115, 305
MboI GATC 2 cut(s) 113, 303
MboII GAAGA 7 cut(s) 159, 242, 249, 341, 437, 540, 613
MfeI CAATTG 2 cut(s) 374, 777
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 777, 931
MlyI GAGTC 3 cut(s) 682, 698, 803
MnlI CCTC 6 cut(s) 48, 161, 235, 627, 873, 928
MseI TTAA 3 cut(s) 348, 468, 515
MslI CAYNNNNRTG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 514
MspI CCGG 2 cut(s) 159, 399
MspR9I CCNGG 2 cut(s) 400, 678
MunI CAATTG 2 cut(s) 374, 777
MvaI CCWGG 1 cut(s) 678
MvnI CGCG 1 cut(s) 770
MwoI GCNNNNNNNGC 3 cut(s) 221, 230, 602
NciI CCSGG 1 cut(s) 400
NdeII GATC 2 cut(s) 113, 303
NlaIII CATG 3 cut(s) 564, 750, 808
NlaIV GGNNCC 2 cut(s) 706, 819
NspV TTCGAA 1 cut(s) 890
PaeR7I CTCGAG 1 cut(s) 872
PcsI WCGNNNNNNNCGW 1 cut(s) 818
PfeI GAWTC 3 cut(s) 10, 361, 829
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 2 cut(s) 232, 607
PleI GAGTC 3 cut(s) 681, 697, 803
PpsI GAGTC 3 cut(s) 681, 697, 803
PshBI ATTAAT 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 676
PspGI CCWGG 1 cut(s) 676
PspN4I GGNNCC 2 cut(s) 706, 819
PspPI GGNCC 2 cut(s) 244, 379
RseI CAYNNNNRTG 1 cut(s) 32
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 3 cut(s) 348, 468, 515
SatI GCNGC 2 cut(s) 231, 606
Sau3AI GATC 2 cut(s) 113, 303
Sau96I GGNCC 2 cut(s) 244, 379
SchI GAGTC 3 cut(s) 682, 698, 803
ScrFI CCNGG 2 cut(s) 400, 678
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 3 cut(s) 173, 283, 732
Sfr274I CTCGAG 1 cut(s) 872
SfuI TTCGAA 1 cut(s) 890
SinI GGWCC 2 cut(s) 244, 379
SlaI CTCGAG 1 cut(s) 872
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 3 cut(s) 514, 723, 872
SmoI CTYRAG 3 cut(s) 514, 723, 872
Sse9I AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 777, 931
SspMI CTAG 1 cut(s) 308
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 2 cut(s) 398, 676
StyI CCWWGG 2 cut(s) 575, 908
TaaI ACNGT 5 cut(s) 248, 279, 335, 358, 788
TaiI ACGT 1 cut(s) 617
TaqI TCGA 7 cut(s) 112, 253, 274, 624, 812, 873, 890
TasI AATT 9 cut(s) 4, 174, 374, 456, 469, 497, 641, 777, 931
TfiI GAWTC 3 cut(s) 10, 361, 829
Tru1I TTAA 3 cut(s) 348, 468, 515
Tru9I TTAA 3 cut(s) 348, 468, 515
TscAI CASTG 5 cut(s) 58, 264, 361, 489, 793
TseI GCWGC 2 cut(s) 230, 605
TspDTI ATGAA 2 cut(s) 17, 540
TspRI CASTG 5 cut(s) 58, 264, 361, 489, 793
Vha464I CTTAAG 1 cut(s) 514
VpaK11BI GGWCC 2 cut(s) 244, 379
VspI ATTAAT 1 cut(s) 468
XapI RAATTY 2 cut(s) 4, 497
XhoI CTCGAG 1 cut(s) 872
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.