AT3G47675

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004953
Physical Location & Seq
Reverse (-)
17576004 .. 17576867
864 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47675.1

Sequence Viewer

Length: 291 bp
ATGAAATTTGAGGAACTACTCATGGAAGATTCATCACAGCTACATAGTAACAAGAGACATGACTTAGAGGAAGGAGTGATGCATCTTAAAGAGAGACTAGAGGAAGAAGAAGCAGTGACTAGAACTTTACGAGCTGCTTTTGATGGCTCTATTGTTTCTCTCCCAAGTCTCTCCTCATTGTTTCTTCCACCTCAGTTTTCTGAGCTCTTTCAAGAATTAGCCATCGTGGAGGCAGAGATTCTTTGTCTAGACAGAAAAATCAAGGAGCAAGCATCTTGTGTAGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

96

Amino Acids

10.93

Weight (kDa)

4.7

Isoelectric Point (pI)

71.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 15 - 89 7.8e-18 Leucine-zipper of ternary complex factor MIP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 5
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 3 cut(s) 40, 134, 205
AluI AGCT 3 cut(s) 40, 134, 205
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 3 cut(s) 49, 88, 173
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 5
BanII GRGCYC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 121
BccI CCATC 2 cut(s) 137, 230
BcoDI GTCTC 3 cut(s) 49, 88, 173
BfaI CTAG 4 cut(s) 98, 120, 248, 289
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmsI GCATC 3 cut(s) 69, 91, 281
BseMII CTCAG 2 cut(s) 192, 206
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 207
BsmAI GTCTC 3 cut(s) 49, 88, 173
Bsp1286I GDGCHC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 193, 205
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 64, 192, 201
BstMAI GTCTC 3 cut(s) 49, 88, 173
BstV1I GCAGC 1 cut(s) 121
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 270
CviAII CATG 2 cut(s) 22, 59
CviJI RGCY 5 cut(s) 40, 134, 147, 205, 221
CviKI_1 RGCY 5 cut(s) 40, 134, 147, 205, 221
DdeI CTNAG 3 cut(s) 64, 192, 201
Ecl136II GAGCTC 1 cut(s) 205
Eco24I GRGCYC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 207
FaeI CATG 2 cut(s) 25, 62
FaiI YATR 3 cut(s) 23, 45, 60
FatI CATG 2 cut(s) 21, 58
Fnu4HI GCNGC 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 4 cut(s) 98, 120, 248, 289
GluI GCNGC 1 cut(s) 135
Hin1II CATG 2 cut(s) 25, 62
HinfI GANTC 2 cut(s) 29, 238
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 2 cut(s) 212, 248
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 82
HpyF3I CTNAG 3 cut(s) 64, 192, 201
Hsp92II CATG 2 cut(s) 25, 62
LmnI GCTCC 1 cut(s) 265
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 3 cut(s) 69, 91, 281
MaeI CTAG 4 cut(s) 98, 120, 248, 289
MaeIII GTNAC 2 cut(s) 47, 115
MboII GAAGA 4 cut(s) 38, 116, 119, 176
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 5, 215
MnlI CCTC 6 cut(s) 4, 61, 94, 184, 201, 223
Mph1103I ATGCAT 1 cut(s) 84
MseI TTAA 1 cut(s) 87
NlaIII CATG 2 cut(s) 25, 62
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 84
PfeI GAWTC 2 cut(s) 29, 238
PkrI GCNGC 1 cut(s) 136
Psp124BI GAGCTC 1 cut(s) 207
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 207
SetI ASST 4 cut(s) 42, 136, 193, 207
SfaNI GCATC 3 cut(s) 69, 91, 281
Sse9I AATT 2 cut(s) 5, 215
SspMI CTAG 4 cut(s) 98, 120, 248, 289
SstI GAGCTC 1 cut(s) 207
TasI AATT 2 cut(s) 5, 215
TfiI GAWTC 2 cut(s) 29, 238
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 120
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 2 cut(s) 17, 21
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 5
XbaI TCTAGA 1 cut(s) 247
XspI CTAG 4 cut(s) 98, 120, 248, 289
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.