Rh1AG343500

Protein of unknown function, DUF547

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
57939220 .. 57941554
2335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG343500.1

Sequence Viewer

Length: 1572 bp
ATGAAACTCGAAGACTTTCTAATGCAACGAAGCGAGGACAAGCAGAAGAGACTTGTTCTTGAGGAAGAGGTTCTGAAATTGCAAGAAGAGTTGGATGGGGAGCAAACACTTAATAGGGTTCTTCACTGCGCACTTCATGGACCTGCTCTATCACATCCATGTCTTCTCTCATTGCTTCCACCTCAGGTTCAGGAACTATTTTCAGAGCTGGAAATGGTGGAAGACGAGATCAGTGGGCTTGAAAGAAAAGTCGAAGAGCTGAAACTGATGTTGTACAAAGAGAGAGCTCAAACAAGAGAGTGGGAAATGCATAGGAGGCAGTGGGAACAGAATCAGTCATTCTTCAGAGCTGGAAACCAGTCCCTGATTGAGGGATCGAGATCGCAGAACTACGAAGCATTGAGAAAAGAAAAAAGGAGAGTAAGGGATAGAAGAGCCTCTGTTGGTTCTGCTTCTGATATGCAAAGGTGGAATTTCACAAAAACTGATGGAGAGATTGCTGAAATGTCAAGGAGACTAAGCAGAAGAAGCAGAATTCAAAGCATTATGAACAATGAAAGTGGCATTCAGAAACCAAATGAACTCTCGGAACAGTTGCTCAAGTGCCTTATAGGCATATTTCTTGAACTAAAACAGACCTCATTGGAAAAAGAGGGGTCATCATCTGTTGTGCCAAAGCTTACTCTCTCTTGTATGAACTCAAAAGGGTTCATGCCGAAAACCTCATTCAACTGCAAATCATCAGCGCTCTTCAACTACAATACATCACATGTTGACCCTTATTGCATTTTGCCAGATATAGATGGTGCTGTCCGGGACGTTGGCCCATATAAGAACTTCATCCAAATCACAAGAAGCTCGTTAGACATCAGACGCTTATCAGATTGTTCAAATGGAATTGAAAAATTGAGGAAATTGATGCGTCAATTGTGTGATGTGGACTTGACTTGCTTGACATACAAGCAGAAGCTAGCATTTTGGATCAATATCTACAATGCCTGCATCATGCATGCATTTCTCGATCATGGGTTGCCTTCCACACAAGAAAAGCTACTTTTACTTATGAACAAGGCTGCACTGAATGTTGGCGGCATAGTGCTCAATGCTCTAGCTATTGAGCATTTCATACTTCGACATCCATCAGAAACAAAACAAGGACCTGCTTATGAGAAAGAAATGCTACTAAGACATGCCTATGGTTTAGGATACCCTGAACCAAATGTGACCTTTGCTCTTTGCAGAGGAAGTTGGTCCTCACCAGCATTAAGGGTCTATACCTCAGAGGAGATTGTAAATGAGTTAGAGAGAGCCAAAGTAGAGTACTTGGAAGCTTCGGTGGGAGTTACTAGCAAGAAGAGAATTGTGGTGCCAAAGCTTCTACAATGGCATATGCGCGATTTTGCAGATGATATGGACTCGCTGCTAGAATGGATTTACAGCCAATTGCCACGATCTGGGTCGCTGAAAAGATTGATAATGGAGTGCTTGAATGGTGAAACAAAGTCACCGATAAACAAAATGGTAGAAGTCCAACCTCATGAATCTGAGTTCCGCTATTTACTGCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

60.36

Weight (kDa)

7.9

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 14 - 94 1.6e-17 Leucine-zipper of ternary complex factor MIP1
DUF547 PF04784 317 - 442 1.5e-38 Protein of unknown function, DUF547
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 130
Acc36I ACCTGC 2 cut(s) 151, 1168
AccB1I GGYRCC 1 cut(s) 1366
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccII CGCG 1 cut(s) 1395
AciI CCGC 2 cut(s) 1089, 1552
AclWI GGATC 2 cut(s) 382, 989
AcsI RAATTY 2 cut(s) 472, 534
AcuI CTGAAG 1 cut(s) 328
AfaI GTAC 2 cut(s) 275, 1322
AfeI AGCGCT 1 cut(s) 747
AfiI CCNNNNNNNGG 2 cut(s) 370, 1454
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 8 cut(s) 242, 539, 626, 730, 754, 891, 902, 1489
Alw21I GWGCWC 2 cut(s) 289, 1101
Alw26I GTCTC 2 cut(s) 43, 508
AlwI GGATC 2 cut(s) 382, 989
AlwNI CAGNNNCTG 1 cut(s) 364
Aor51HI AGCGCT 1 cut(s) 747
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 2 cut(s) 1073, 1420
ApoI RAATTY 2 cut(s) 472, 534
Asp700I GAANNNNTTC 2 cut(s) 15, 69
AspLEI GCGC 3 cut(s) 131, 748, 1395
AspS9I GGNCC 4 cut(s) 140, 824, 1157, 1251
AsuC2I CCSGG 1 cut(s) 815
AsuHPI GGTGA 3 cut(s) 1248, 1497, 1505
AsuNHI GCTAGC 1 cut(s) 970
AvaII GGWCC 3 cut(s) 140, 1157, 1251
AxyI CCTNAGG 1 cut(s) 183
BanI GGYRCC 1 cut(s) 1366
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 3 cut(s) 18, 155, 228
Bbv12I GWGCWC 2 cut(s) 289, 1101
BbvI GCAGC 2 cut(s) 1060, 1407
BccI CCATC 4 cut(s) 89, 482, 797, 1147
BciVI GTATCC 1 cut(s) 1199
BcnI CCSGG 1 cut(s) 815
BcoDI GTCTC 2 cut(s) 43, 508
BfaI CTAG 4 cut(s) 971, 1109, 1347, 1424
BfoI RGCGCY 1 cut(s) 749
BfuAI ACCTGC 2 cut(s) 151, 1168
BfuI GTATCC 1 cut(s) 1199
BglI GCCNNNNNGGC 1 cut(s) 612
BisI GCNGC 3 cut(s) 1074, 1090, 1421
BlsI GCNGC 3 cut(s) 1075, 1091, 1422
BmcAI AGTACT 1 cut(s) 1322
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 3 cut(s) 140, 1157, 1251
BmgT120I GGNCC 4 cut(s) 140, 824, 1157, 1251
BmiI GGNNCC 1 cut(s) 1368
BmrFI CCNGG 1 cut(s) 815
BmsI GCATC 2 cut(s) 909, 1011
BmtI GCTAGC 1 cut(s) 974
BpiI GAAGAC 3 cut(s) 18, 155, 228
BpuEI CTTGAG 2 cut(s) 80, 584
BpuMI CCSGG 1 cut(s) 815
BsaBI GATNNNNATC 2 cut(s) 379, 986
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 1454
Bse1I ACTGG 1 cut(s) 358
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 170
Bse8I GATNNNNATC 2 cut(s) 379, 986
BseGI GGATG 4 cut(s) 100, 154, 840, 1135
BseJI GATNNNNATC 2 cut(s) 379, 986
BseLI CCNNNNNNNGG 2 cut(s) 370, 1454
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 3 cut(s) 197, 1293, 1536
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 1298
BseXI GCAGC 2 cut(s) 1060, 1407
BsgI GTGCAG 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 1395
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 1366
BsiHKAI GWGCWC 2 cut(s) 289, 1101
BsiSI CCGG 1 cut(s) 814
BslFI GGGAC 2 cut(s) 346, 830
BslI CCNNNNNNNGG 2 cut(s) 370, 1454
BsmAI GTCTC 2 cut(s) 43, 508
BsmFI GGGAC 2 cut(s) 346, 830
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 1 cut(s) 825
Bsp1286I GDGCHC 2 cut(s) 289, 1101
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
BspACI CCGC 2 cut(s) 1089, 1552
BspANI GGCC 1 cut(s) 825
BspCNI CTCAG 3 cut(s) 196, 1292, 1537
BspFNI CGCG 1 cut(s) 1395
BspHI TCATGA 1 cut(s) 1537
BspLI GGNNCC 1 cut(s) 1368
BspMI ACCTGC 2 cut(s) 151, 1168
BspOI GCTAGC 1 cut(s) 974
BspPI GGATC 2 cut(s) 382, 989
BspQI GCTCTTC 3 cut(s) 249, 427, 755
BspT107I GGYRCC 1 cut(s) 1366
BsrDI GCAATG 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 1 cut(s) 358
BssMI GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 7 cut(s) 41, 60, 81, 249, 427, 755, 1349
BstAUI TGTACA 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 972, 1000, 1011
BstDEI CTNAG 5 cut(s) 183, 518, 1184, 1279, 1545
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 4 cut(s) 100, 154, 840, 1135
BstFNI CGCG 1 cut(s) 1395
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 3 cut(s) 131, 748, 1395
BstKTI GATC 6 cut(s) 231, 377, 383, 984, 1024, 1454
BstMAI GTCTC 2 cut(s) 43, 508
BstMBI GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
BstMWI GCNNNNNNNGC 3 cut(s) 316, 528, 612
BstNSI RCATGY 3 cut(s) 773, 1013, 1193
BstSCI CCNGG 1 cut(s) 813
BstUI CGCG 1 cut(s) 1395
BstV1I GCAGC 2 cut(s) 1060, 1407
BstV2I GAAGAC 3 cut(s) 18, 155, 228
Bsu36I CCTNAGG 1 cut(s) 183
BsuI GTATCC 1 cut(s) 1199
BsuRI GGCC 1 cut(s) 825
BtsCI GGATG 4 cut(s) 100, 154, 840, 1135
BtsI GCAGTG 2 cut(s) 124, 326
BtsIMutI CAGTG 4 cut(s) 124, 238, 326, 1076
BveI ACCTGC 2 cut(s) 151, 1168
Cac8I GCNNGC 3 cut(s) 972, 1000, 1011
CaiI CAGNNNCTG 1 cut(s) 364
CciI TCATGA 1 cut(s) 1537
CfoI GCGC 3 cut(s) 131, 748, 1395
Cfr13I GGNCC 4 cut(s) 140, 824, 1157, 1251
CseI GACGC 2 cut(s) 882, 911
Csp6I GTAC 2 cut(s) 274, 1321
CspCI CAANNNNNGTGG 2 cut(s) 541, 576
CviAII CATG 9 cut(s) 137, 159, 712, 770, 1006, 1010, 1025, 1190, 1538
CviQI GTAC 2 cut(s) 274, 1321
DdeI CTNAG 5 cut(s) 183, 518, 1184, 1279, 1545
DpnI GATC 6 cut(s) 230, 376, 382, 983, 1023, 1453
DpnII GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
Eam1104I CTCTTC 7 cut(s) 41, 60, 81, 249, 427, 755, 1349
EarI CTCTTC 7 cut(s) 41, 60, 81, 249, 427, 755, 1349
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 140, 1157, 1251
Eco47III AGCGCT 1 cut(s) 747
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 328
Eco81I CCTNAGG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 287
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 1157
EcoRI GAATTC 1 cut(s) 534
EcoT22I ATGCAT 3 cut(s) 312, 1011, 1015
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 9 cut(s) 140, 162, 715, 773, 1009, 1013, 1028, 1193, 1541
FaqI GGGAC 2 cut(s) 346, 830
FatI CATG 9 cut(s) 136, 158, 711, 769, 1005, 1009, 1024, 1189, 1537
FauNDI CATATG 1 cut(s) 1389
Fnu4HI GCNGC 3 cut(s) 1074, 1090, 1421
FokI GGATG 4 cut(s) 107, 141, 827, 1122
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 3 cut(s) 1074, 1090, 1421
FspBI CTAG 4 cut(s) 971, 1109, 1347, 1424
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 3 cut(s) 130, 747, 1394
GluI GCNGC 3 cut(s) 1074, 1090, 1421
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 1 cut(s) 825
HapII CCGG 1 cut(s) 814
HgaI GACGC 2 cut(s) 882, 911
HhaI GCGC 3 cut(s) 131, 748, 1395
Hin1II CATG 9 cut(s) 140, 162, 715, 773, 1009, 1013, 1028, 1193, 1541
Hin6I GCGC 3 cut(s) 129, 746, 1393
HinP1I GCGC 3 cut(s) 129, 746, 1393
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 3 cut(s) 677, 1329, 1373
HinfI GANTC 3 cut(s) 331, 1415, 1541
HpaII CCGG 1 cut(s) 814
HphI GGTGA 3 cut(s) 1248, 1497, 1505
Hpy166II GTNNAC 2 cut(s) 775, 940
Hpy188III TCNNGA 6 cut(s) 59, 191, 378, 623, 1019, 1538
Hpy8I GTNNAC 2 cut(s) 775, 940
HpyAV CCTTC 1 cut(s) 1044
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 528, 612
HpyF3I CTNAG 5 cut(s) 183, 518, 1184, 1279, 1545
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 9 cut(s) 140, 162, 715, 773, 1009, 1013, 1028, 1193, 1541
HspAI GCGC 3 cut(s) 129, 746, 1393
Kzo9I GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
LguI GCTCTTC 3 cut(s) 249, 427, 755
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 1060, 1407
LweI GCATC 2 cut(s) 909, 1011
MaeI CTAG 4 cut(s) 971, 1109, 1347, 1424
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 3 cut(s) 1222, 1342, 1503
MalI GATC 6 cut(s) 230, 376, 382, 983, 1023, 1453
MboI GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
MfeI CAATTG 2 cut(s) 926, 1442
MhlI GDGCHC 2 cut(s) 289, 1101
MluCI AATT 9 cut(s) 77, 472, 534, 897, 905, 914, 926, 1359, 1442
MlyI GAGTC 1 cut(s) 1409
MmeI TCCRAC 2 cut(s) 72, 1555
Mph1103I ATGCAT 3 cut(s) 312, 1011, 1015
MroXI GAANNNNTTC 2 cut(s) 15, 69
MseI TTAA 2 cut(s) 111, 1265
MslI CAYNNNNRTG 2 cut(s) 157, 1194
MspI CCGG 1 cut(s) 814
MspR9I CCNGG 1 cut(s) 815
MunI CAATTG 2 cut(s) 926, 1442
Mva1269I GAATGC 1 cut(s) 564
MvnI CGCG 1 cut(s) 1395
MwoI GCNNNNNNNGC 3 cut(s) 316, 528, 612
NciI CCSGG 1 cut(s) 815
NdeI CATATG 1 cut(s) 1389
NdeII GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
NheI GCTAGC 1 cut(s) 970
NlaIII CATG 9 cut(s) 140, 162, 715, 773, 1009, 1013, 1028, 1193, 1541
NlaIV GGNNCC 1 cut(s) 1368
NmuCI GTSAC 2 cut(s) 1222, 1503
NsbI TGCGCA 1 cut(s) 130
NsiI ATGCAT 3 cut(s) 312, 1011, 1015
NspI RCATGY 3 cut(s) 773, 1013, 1193
PaeI GCATGC 1 cut(s) 1013
PagI TCATGA 1 cut(s) 1537
PciI ACATGT 1 cut(s) 769
PciSI GCTCTTC 3 cut(s) 249, 427, 755
PctI GAATGC 1 cut(s) 564
PdmI GAANNNNTTC 2 cut(s) 15, 69
PfeI GAWTC 2 cut(s) 331, 1541
PflMI CCANNNNNTGG 1 cut(s) 1454
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 3 cut(s) 1075, 1091, 1422
PleI GAGTC 1 cut(s) 1409
PpsI GAGTC 1 cut(s) 1409
PpuMI RGGWCCY 1 cut(s) 1157
PscI ACATGT 1 cut(s) 769
Psp124BI GAGCTC 1 cut(s) 289
Psp5II RGGWCCY 1 cut(s) 1157
PspN4I GGNNCC 1 cut(s) 1368
PspPI GGNCC 4 cut(s) 140, 824, 1157, 1251
PspPPI RGGWCCY 1 cut(s) 1157
PstNI CAGNNNCTG 1 cut(s) 364
RsaI GTAC 2 cut(s) 275, 1322
RsaNI GTAC 2 cut(s) 274, 1321
RseI CAYNNNNRTG 2 cut(s) 157, 1194
SacI GAGCTC 1 cut(s) 289
SapI GCTCTTC 3 cut(s) 249, 427, 755
SaqAI TTAA 2 cut(s) 111, 1265
SatI GCNGC 3 cut(s) 1074, 1090, 1421
Sau3AI GATC 6 cut(s) 228, 374, 380, 981, 1021, 1451
Sau96I GGNCC 4 cut(s) 140, 824, 1157, 1251
ScaI AGTACT 1 cut(s) 1322
SchI GAGTC 1 cut(s) 1409
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 289, 1101
SfaNI GCATC 2 cut(s) 909, 1011
SinI GGWCC 3 cut(s) 140, 1157, 1251
SmiMI CAYNNNNRTG 2 cut(s) 157, 1194
SmlI CTYRAG 2 cut(s) 59, 599
SmoI CTYRAG 2 cut(s) 59, 599
SphI GCATGC 1 cut(s) 1013
Sse9I AATT 9 cut(s) 77, 472, 534, 897, 905, 914, 926, 1359, 1442
SsiI CCGC 2 cut(s) 1089, 1552
SspMI CTAG 4 cut(s) 971, 1109, 1347, 1424
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 813
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 1 cut(s) 822
TaqI TCGA 5 cut(s) 9, 252, 377, 1020, 1132
TasI AATT 9 cut(s) 77, 472, 534, 897, 905, 914, 926, 1359, 1442
TatI WGTACW 2 cut(s) 273, 1320
TauI GCSGC 1 cut(s) 1092
TfiI GAWTC 2 cut(s) 331, 1541
Tru1I TTAA 2 cut(s) 111, 1265
Tru9I TTAA 2 cut(s) 111, 1265
TscAI CASTG 4 cut(s) 131, 238, 326, 1083
TseFI GTSAC 2 cut(s) 1222, 1503
TseI GCWGC 2 cut(s) 1073, 1420
Tsp45I GTSAC 2 cut(s) 1222, 1503
TspRI CASTG 4 cut(s) 131, 238, 326, 1083
Van91I CCANNNNNTGG 1 cut(s) 1454
VpaK11BI GGWCC 3 cut(s) 140, 1157, 1251
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 2 cut(s) 472, 534
XceI RCATGY 3 cut(s) 773, 1013, 1193
XmnI GAANNNNTTC 2 cut(s) 15, 69
XspI CTAG 4 cut(s) 971, 1109, 1347, 1424
ZrmI AGTACT 1 cut(s) 1322
Zsp2I ATGCAT 3 cut(s) 312, 1011, 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.