Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

21102022 .. 21102815

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATATGTAATGGGAGGAGAGCTTCTATTTCTTACCAAATTTCAGGCATTTCTAGGCTGCCTTCCACACAGGAGAAACTACTGGCATTTATGAACAAGGCTGCTCTGAATGTCGGAGGCAGAGGGCCTGCCTATGGGAAGGAAATGCTACTAAGACATGCCTATGGTCTTGGATACCCTGAACCTTGCGTCACATTTGCCCTTTACCGCAGCAGTTGGTCCTCTCCGGCATTAAGGGTTTACACCCCCGACGACATAGTCAATGAGTTGGAGAGAGCGAAACTGGAGTACTTGGAAACTTCAGTGGAAGTCACAAGCAAGAAGAAAATTGTGGTGCCCAAGCTTCTTCAATGGCACATGCTCAATTTTGCAGACGGTATGGAATCATTGCTGGAATGGATTTACAGCCAACTGCCGCGGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

143

Amino Acids

16.02

Weight (kDa)

9.12

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	334
AccII	CGCG	1 cut(s)	418
AciI	CCGC	3 cut(s)	208, 416, 418
AcsI	RAATTY	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	134, 422
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	2 cut(s)	23, 343
AluI	AGCT	2 cut(s)	23, 343
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	58, 101, 210
ApoI	RAATTY	1 cut(s)	39
AspS9I	GGNCC	2 cut(s)	125, 219
AvaII	GGWCC	1 cut(s)	219
BaeGI	GKGCMC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	334
BbvI	GCAGC	3 cut(s)	45, 88, 222
BciVI	GTATCC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	4 cut(s)	59, 102, 211, 416
BlsI	GCNGC	4 cut(s)	60, 103, 212, 417
BmcAI	AGTACT	1 cut(s)	290
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	125, 219
BmiI	GGNNCC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 422
Bse1I	ACTGG	2 cut(s)	87, 288
Bse3DI	GCAATG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	134, 422
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	87, 288
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	45, 88, 222
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	134, 422
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	339
BspACI	CCGC	3 cut(s)	208, 416, 418
BspANI	GGCC	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	87, 288
BssECI	CCNNGG	1 cut(s)	416
Bst4CI	ACNGT	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	418
BstNSI	RCATGY	2 cut(s)	161, 361
BstSLI	GKGCMC	1 cut(s)	339
BstUI	CGCG	1 cut(s)	418
BstV1I	GCAGC	3 cut(s)	45, 88, 222
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	125, 219
Cfr42I	CCGCGG	1 cut(s)	419
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	158, 358
CviJI	RGCY	6 cut(s)	23, 58, 101, 127, 343, 408
CviKI_1	RGCY	6 cut(s)	23, 58, 101, 127, 343, 408
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	1 cut(s)	152
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	125
FaeI	CATG	2 cut(s)	161, 361
FaiI	YATR	8 cut(s)	7, 92, 135, 159, 165, 257, 359, 380
FatI	CATG	2 cut(s)	157, 357
Fnu4HI	GCNGC	4 cut(s)	59, 102, 211, 416
Fsp4HI	GCNGC	4 cut(s)	59, 102, 211, 416
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	4 cut(s)	59, 102, 211, 416
GsuI	CTGGAG	1 cut(s)	305
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	161, 361
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	108, 116
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	72, 133
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	371
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	161, 361
KspI	CCGCGG	1 cut(s)	419
LpnPI	CCDG	9 cut(s)	30, 56, 68, 141, 192, 240, 269, 377, 408
Lsp1109I	GCAGC	3 cut(s)	45, 88, 222
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	190, 310
MboII	GAAGA	2 cut(s)	334, 338
MhlI	GDGCHC	1 cut(s)	339
MluCI	AATT	3 cut(s)	39, 327, 364
MmeI	TCCRAC	2 cut(s)	94, 249
MnlI	CCTC	4 cut(s)	9, 110, 116, 232
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	418
MspI	CCGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	418
NlaIII	CATG	2 cut(s)	161, 361
NlaIV	GGNNCC	1 cut(s)	336
NmuCI	GTSAC	2 cut(s)	190, 310
NspI	RCATGY	2 cut(s)	161, 361
PfeI	GAWTC	1 cut(s)	383
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	60, 103, 212, 417
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	125, 219
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	162
SacII	CCGCGG	1 cut(s)	419
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	59, 102, 211, 416
Sau96I	GGNCC	2 cut(s)	125, 219
ScaI	AGTACT	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	3 cut(s)	25, 187, 345
Sfr303I	CCGCGG	1 cut(s)	419
SgrBI	CCGCGG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse9I	AATT	3 cut(s)	39, 327, 364
SsiI	CCGC	3 cut(s)	208, 416, 418
SspMI	CTAG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	3 cut(s)	39, 327, 364
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	418
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	309
TseFI	GTSAC	2 cut(s)	190, 310
TseI	GCWGC	3 cut(s)	58, 101, 210
Tsp45I	GTSAC	2 cut(s)	190, 310
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	39
XceI	RCATGY	2 cut(s)	161, 361
XspI	CTAG	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.