pycom01g15590

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0004953
Physical Location & Seq
Forward (+)
15406496 .. 15406806
311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g15590.1

Sequence Viewer

Length: 201 bp
ATGAAATTCGAAGACTTTCTAATGCAGCGAAGCGAGGAGAAGCAGAAAAGACTCGATCTTGAGGAAGAGGTTAAGAAATTGCAGGCAGAGTTGGATGGAGAACAAACACTTGGCAGGTTTCTGCATTGTGCACTTCATGGACCTGTTCAGTCACATCCATGTCTTTTATCGTTGTTTCCACCTCAGGTATCGTTGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

67

Amino Acids

7.65

Weight (kDa)

5.5

Isoelectric Point (pI)

65.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lzipper-MIP1 PF14389 13 - 63 1.1e-08 Leucine-zipper of ternary complex factor MIP1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 93, 125
Alw21I GWGCWC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 25
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 140
AsuII TTCGAA 1 cut(s) 9
AvaII GGWCC 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 89
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 80
Bse21I CCTNAGG 1 cut(s) 183
BseGI GGATG 2 cut(s) 100, 154
BseMII CTCAG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 9
BssMI GATC 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 60
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 100, 154
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 18
Bsu36I CCTNAGG 1 cut(s) 183
BtsCI GGATG 2 cut(s) 100, 154
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 2 cut(s) 137, 159
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 183
FaeI CATG 2 cut(s) 140, 162
FaiI YATR 2 cut(s) 138, 160
FatI CATG 2 cut(s) 136, 158
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 2 cut(s) 107, 141
Fsp4HI GCNGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 140, 162
HinfI GANTC 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 25, 82, 124, 131
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 2 cut(s) 140, 162
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 68, 100, 156, 170
Lsp1109I GCAGC 1 cut(s) 37
MaeIII GTNAC 1 cut(s) 150
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 23, 77
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 5, 77
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 28, 55, 61, 192
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 157
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 140, 162
NmuCI GTSAC 1 cut(s) 150
NspV TTCGAA 1 cut(s) 9
PdmI GAANNNNTTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 45
SduI GDGCHC 1 cut(s) 133
SetI ASST 5 cut(s) 72, 119, 145, 184, 189
SfuI TTCGAA 1 cut(s) 9
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 5, 77
TaqI TCGA 2 cut(s) 9, 54
TasI AATT 2 cut(s) 5, 77
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 17, 125
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 140
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.