Prupe.2G236700_v2.0.a1

Protein of unknown function, DUF547

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0004953
Physical Location & Seq
Forward (+)
25805476 .. 25806622
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G236700.2

Sequence Viewer

Length: 606 bp
ATGATATTGATTGGGAGCTTTCTGTTCTTAATTATCAAATTTCAGGCCTTTCTGGAACATGGGCTGCCTTCCACGCAGGAGAAGCTACTGGCGCTTATGAACAAGGCTGCATTGAACGTGGGAGGCATAGTGTTAAATGCTCTGGCGATCGAGCATTTCATACTCCGCCATCCATCTGAATCGAAACATGGGCCTGCGTATGAGAAAGAAATGCTACTAAGACATGCCTACGGTCTCGGATACCCGGAACCTAATGTGACATTTGCTCTTTGTCGAGGCAGTTGGTCCTCACCAGCATTAAGGGTCTATACCCCAGACGACATAGTTAACGAGTTGGAGAGAGCAAAAGTGGAGTACTTAGAAGCTTCTGTTGGAGTTACAAGCAAGAAGAAAATTCTGGTGCCAAAGCTTCTACAATGGCACATGCTTGATTTCGCTGACGGTATGGAATCGTTGCTGGAATGGATTTACAGCCAATTGCCACGCTCTGCTTCACTGAAAAGATTGATAATGCAGTGCTTGAATGGGGAAACGAAGTCTCCGATAAACAAAATGGTCGAAGTCCAACCTCATGAATCAGAGTTCCGGTACTTGCTGCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF547 Lzipper-MIP1

Protein Analysis

202

Amino Acids

22.79

Weight (kDa)

7.06

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 400
AciI CCGC 1 cut(s) 166
AcsI RAATTY 2 cut(s) 38, 393
AfaI GTAC 2 cut(s) 356, 590
AgsI TTSAA 2 cut(s) 115, 523
AjuI GAANNNNNNNTTGG 2 cut(s) 354, 386
AluBI AGCT 4 cut(s) 18, 85, 365, 409
AluI AGCT 4 cut(s) 18, 85, 365, 409
Alw26I GTCTC 2 cut(s) 239, 543
AoxI GGCC 2 cut(s) 45, 191
ApeKI GCWGC 3 cut(s) 64, 107, 595
ApoI RAATTY 2 cut(s) 38, 393
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 2 cut(s) 191, 285
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 282
AvaII GGWCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 400
BbvI GCAGC 3 cut(s) 51, 94, 582
BccI CCATC 2 cut(s) 177, 181
BciVI GTATCC 1 cut(s) 233
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 239, 543
BfoI RGCGCY 1 cut(s) 95
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 3 cut(s) 65, 108, 596
BlsI GCNGC 3 cut(s) 66, 109, 597
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 191, 285
BmiI GGNNCC 2 cut(s) 249, 402
BmrFI CCNGG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 585
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 523, 553
Bse1I ACTGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 93
BseXI GCAGC 3 cut(s) 51, 94, 582
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 47, 193
BshNI GGYRCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 2 cut(s) 245, 586
BsmAI GTCTC 2 cut(s) 239, 543
BsnI GGCC 2 cut(s) 47, 193
Bso31I GGTCTC 1 cut(s) 239
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 47, 193
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 249, 402
BspT107I GGYRCC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 93
BssMI GATC 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 233, 443
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 218, 358
BstF5I GGATG 1 cut(s) 169
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 2 cut(s) 239, 543
BstMBI GATC 1 cut(s) 147
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 73, 82, 91
BstNSI RCATGY 2 cut(s) 227, 427
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 51, 94, 582
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 2 cut(s) 47, 193
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 494, 521
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 191, 285
Csp6I GTAC 2 cut(s) 355, 589
CviAII CATG 5 cut(s) 59, 188, 224, 424, 572
CviJI RGCY 9 cut(s) 18, 47, 64, 85, 107, 193, 365, 409, 474
CviKI_1 RGCY 9 cut(s) 18, 47, 64, 85, 107, 193, 365, 409, 474
CviQI GTAC 2 cut(s) 355, 589
DdeI CTNAG 2 cut(s) 218, 358
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 47
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 285
FaeI CATG 5 cut(s) 62, 191, 227, 427, 575
FatI CATG 5 cut(s) 58, 187, 223, 423, 571
Fnu4HI GCNGC 3 cut(s) 65, 108, 596
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 3 cut(s) 65, 108, 596
GlaI GCGC 1 cut(s) 93
GluI GCNGC 3 cut(s) 65, 108, 596
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 47, 193
HapII CCGG 2 cut(s) 245, 586
HhaI GCGC 1 cut(s) 94
Hin1II CATG 5 cut(s) 62, 191, 227, 427, 575
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 2 cut(s) 363, 407
HinfI GANTC 3 cut(s) 179, 449, 575
HpaI GTTAAC 1 cut(s) 328
HpaII CCGG 2 cut(s) 245, 586
HphI GGTGA 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 178, 239, 543, 580
Hpy188III TCNNGA 2 cut(s) 53, 572
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 233, 443
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 110, 514
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 82, 91
HpyF3I CTNAG 2 cut(s) 218, 358
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 5 cut(s) 62, 191, 227, 427, 575
HspAI GCGC 1 cut(s) 92
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 15
Lsp1109I GCAGC 3 cut(s) 51, 94, 582
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 256, 376
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 400
MfeI CAATTG 1 cut(s) 476
MluCI AATT 4 cut(s) 30, 38, 393, 476
MmeI TCCRAC 3 cut(s) 315, 352, 589
MnlI CCTC 4 cut(s) 116, 269, 298, 579
MseI TTAA 4 cut(s) 29, 134, 299, 327
MspI CCGG 2 cut(s) 245, 586
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 476
MwoI GCNNNNNNNGC 3 cut(s) 73, 82, 91
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 147
NlaIII CATG 5 cut(s) 62, 191, 227, 427, 575
NlaIV GGNNCC 2 cut(s) 249, 402
NmuCI GTSAC 1 cut(s) 256
NspI RCATGY 2 cut(s) 227, 427
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 539
PfeI GAWTC 3 cut(s) 179, 449, 575
PkrI GCNGC 3 cut(s) 66, 109, 597
Ple19I CGATCG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 249, 402
PspPI GGNCC 2 cut(s) 191, 285
PvuI CGATCG 1 cut(s) 150
RsaI GTAC 2 cut(s) 356, 590
RsaNI GTAC 2 cut(s) 355, 589
SaqAI TTAA 4 cut(s) 29, 134, 299, 327
SatI GCNGC 3 cut(s) 65, 108, 596
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 2 cut(s) 191, 285
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 245
SetI ASST 7 cut(s) 20, 87, 120, 253, 367, 411, 571
SinI GGWCC 1 cut(s) 285
Sse9I AATT 4 cut(s) 30, 38, 393, 476
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 1 cut(s) 166
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 233, 443
TaiI ACGT 1 cut(s) 120
TaqI TCGA 4 cut(s) 150, 182, 274, 558
TasI AATT 4 cut(s) 30, 38, 393, 476
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 3 cut(s) 179, 449, 575
Tru1I TTAA 4 cut(s) 29, 134, 299, 327
Tru9I TTAA 4 cut(s) 29, 134, 299, 327
TscAI CASTG 2 cut(s) 501, 521
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 3 cut(s) 64, 107, 595
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 3 cut(s) 113, 148, 588
TspRI CASTG 2 cut(s) 501, 521
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 2 cut(s) 38, 393
XceI RCATGY 2 cut(s) 227, 427
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.