Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

15407498 .. 15409324

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTATGCAGGACGTGAAACTGCTGAATTATCAAGGAGACAAAGGGGAAGAAGCAGAAACCAGGGCCATGGAGAAAATGATCTGAAACCAAATGAACTCTCAGAAGAACTTCTCAAGTGCCTTGTATCCATATTTCTTGAACTGAAACAAGCATCACTCGACAAAGAGGGATCATCTGTTGTCCCAAAGCTTGCACTTTCCTGCATGAACTCGAAAGGGCTCATTCCGAAGACCTCATTCAACTGCAAATCATCCACAATTTTCTTCAACGACAACACCTCGTCCAATGCAGACCCTTACTGCATATTGCCGGACTTAGACGGTGCTGTCAGGGACATTGGCCCGTACAAAAACTTCATCCAGATCACGAGGAGCTCATTCGATGTCAGCCGATTGTCTGAGTGTTTGAATGCAATCGAAAAGTTGAGGAATTTGATGCATCAGCTGTGTGATGCGGACTTGACTTTCTTGACCTACAAGCAAAAGTTGGCGTTCTGGATCAACATCTACAATGCCTGCATCATGCATGCATTTCTGGAACATGGGCTGCCGTCCACACCGGAGAAACTGCTGGCACTTATGAACAAGGCTGCTCTAAATGTCGGAGGCATAGTGCTGAATGCTCTGGCTATCGAGCATTTCATTCTCCGCCATCCATCTGAATCGAAACATGGGCCTGCCTATGAGAAGGAAATGCTACTAAGAAATGCGTATGGTCTCGGATACCCTGAACCTAATGTCACATTTGCTCTTTGCCGCGGCAGTTGGTCCTCACCAGCATTAAGGGTTTATACCTCCGATGACATAGTCAATGAGTTGGAGAGAGCAAAACTGGAGTACTTGGAAGCTTCGGTGGGAGTCACAAGCAAGAAGAAGATTGTGGTGCCCAAGCTTCTTCAATGGAACATGCTCGATTTTGCAGACGGTATGGAATCATTGCTGGAATGGATTTACAGCCAACTACCGCGGTCTGGTTCACTGAAACGATTGATAATGGAGTGCTTGAATGGAGAAACAAAGTCTCCGATAATCAGAATGGTGGAAGTCCAACCTTATGATTCCGAGTTCCGGTACCTGTTGCCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

363

Amino Acids

40.85

Weight (kDa)

7.03

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	326
Acc65I	GGTACC	1 cut(s)	1071
AccB1I	GGYRCC	2 cut(s)	883, 1071
AccII	CGCG	2 cut(s)	759, 967
AciI	CCGC	6 cut(s)	455, 649, 757, 759, 965, 967
AclWI	GGATC	2 cut(s)	178, 506
AcsI	RAATTY	1 cut(s)	430
AfaI	GTAC	3 cut(s)	347, 839, 1073
AfiI	CCNNNNNNNGG	2 cut(s)	971, 1068
AgsI	TTSAA	6 cut(s)	140, 241, 268, 409, 899, 1006
AjiI	CACGTC	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	5 cut(s)	190, 375, 445, 848, 892
AluI	AGCT	5 cut(s)	190, 375, 445, 848, 892
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	3 cut(s)	31, 722, 1026
AlwI	GGATC	2 cut(s)	178, 506
AoxI	GGCC	3 cut(s)	64, 340, 674
ApeKI	GCWGC	2 cut(s)	547, 590
ApoI	RAATTY	1 cut(s)	430
Asp700I	GAANNNNTTC	1 cut(s)	108
Asp718I	GGTACC	1 cut(s)	1071
AspS9I	GGNCC	4 cut(s)	64, 341, 674, 768
AsuHPI	GGTGA	1 cut(s)	765
AvaII	GGWCC	1 cut(s)	768
BaeGI	GKGCMC	1 cut(s)	888
BanI	GGYRCC	2 cut(s)	883, 1071
BanII	GRGCYC	2 cut(s)	222, 377
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BauI	CACGAG	1 cut(s)	367
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	534, 577
BccI	CCATC	2 cut(s)	660, 664
BceAI	ACGGC	2 cut(s)	535, 1066
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	2 cut(s)	136, 716
BcoDI	GTCTC	3 cut(s)	31, 722, 1026
BfuI	GTATCC	2 cut(s)	136, 716
BisI	GCNGC	4 cut(s)	548, 591, 757, 760
BlsI	GCNGC	4 cut(s)	549, 592, 758, 761
BmcAI	AGTACT	1 cut(s)	839
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	768
BmgBI	CACGTC	1 cut(s)	14
BmgT120I	GGNCC	4 cut(s)	64, 341, 674, 768
BmiI	GGNNCC	2 cut(s)	885, 1073
BmrFI	CCNGG	1 cut(s)	62
BmsI	GCATC	5 cut(s)	161, 426, 442, 448, 528
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	98
BsaBI	GATNNNNATC	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	722
BsaJI	CCNNGG	4 cut(s)	61, 67, 757, 965
BsaWI	WCCGGW	2 cut(s)	559, 1068
BsaXI	ACNNNNNCTCC	4 cut(s)	597, 627, 1006, 1036
Bsc4I	CCNNNNNNNGG	2 cut(s)	971, 1068
Bse1I	ACTGG	1 cut(s)	837
Bse3DI	GCAATG	1 cut(s)	935
Bse8I	GATNNNNATC	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	4 cut(s)	61, 67, 757, 965
BseGI	GGATG	3 cut(s)	251, 357, 652
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	971, 1068
BseMI	GCAATG	1 cut(s)	935
BseMII	CTCAG	2 cut(s)	114, 390
BseNI	ACTGG	1 cut(s)	837
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	888
BseXI	GCAGC	2 cut(s)	534, 577
Bsh1236I	CGCG	2 cut(s)	759, 967
BshFI	GGCC	3 cut(s)	66, 342, 676
BshNI	GGYRCC	2 cut(s)	883, 1071
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	3 cut(s)	311, 560, 1069
BslFI	GGGAC	2 cut(s)	167, 347
BslI	CCNNNNNNNGG	2 cut(s)	971, 1068
BsmAI	GTCTC	3 cut(s)	31, 722, 1026
BsmFI	GGGAC	2 cut(s)	167, 347
BsmI	GAATGC	2 cut(s)	415, 625
BsnI	GGCC	3 cut(s)	66, 342, 676
Bso31I	GGTCTC	1 cut(s)	722
Bsp1286I	GDGCHC	3 cut(s)	222, 377, 888
Bsp143I	GATC	4 cut(s)	79, 170, 363, 498
Bsp19I	CCATGG	1 cut(s)	67
BspACI	CCGC	6 cut(s)	455, 649, 757, 759, 965, 967
BspANI	GGCC	3 cut(s)	66, 342, 676
BspCNI	CTCAG	2 cut(s)	113, 391
BspFNI	CGCG	2 cut(s)	759, 967
BspLI	GGNNCC	2 cut(s)	885, 1073
BspPI	GGATC	2 cut(s)	178, 506
BspT107I	GGYRCC	2 cut(s)	883, 1071
BspTNI	GGTCTC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	935
BsrI	ACTGG	1 cut(s)	837
BssECI	CCNNGG	4 cut(s)	61, 67, 757, 965
BssMI	GATC	4 cut(s)	79, 170, 363, 498
BssSI	CACGAG	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	323, 926
BstC8I	GCNNGC	5 cut(s)	192, 517, 528, 573, 678
BstDEI	CTNAG	4 cut(s)	100, 316, 399, 701
BstDSI	CCRYGG	3 cut(s)	67, 757, 965
BstF5I	GGATG	3 cut(s)	251, 357, 652
BstFNI	CGCG	2 cut(s)	759, 967
BstKTI	GATC	4 cut(s)	82, 173, 366, 501
BstMAI	GTCTC	3 cut(s)	31, 722, 1026
BstMBI	GATC	4 cut(s)	79, 170, 363, 498
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	530, 910
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	888
BstUI	CGCG	2 cut(s)	759, 967
BstV1I	GCAGC	2 cut(s)	534, 577
BstV2I	GAAGAC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuI	GTATCC	2 cut(s)	136, 716
BsuRI	GGCC	3 cut(s)	66, 342, 676
BtgI	CCRYGG	3 cut(s)	67, 757, 965
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	251, 357, 652
BtsIMutI	CAGTG	1 cut(s)	977
Cac8I	GCNNGC	5 cut(s)	192, 517, 528, 573, 678
Cfr13I	GGNCC	4 cut(s)	64, 341, 674, 768
Cfr42I	CCGCGG	2 cut(s)	760, 968
Csp6I	GTAC	3 cut(s)	346, 838, 1072
CviAII	CATG	7 cut(s)	68, 205, 523, 527, 542, 671, 907
CviQI	GTAC	3 cut(s)	346, 838, 1072
DdeI	CTNAG	4 cut(s)	100, 316, 399, 701
DpnI	GATC	4 cut(s)	81, 172, 365, 500
DpnII	GATC	4 cut(s)	79, 170, 363, 498
DrdI	GACNNNNNNGTC	1 cut(s)	326
DseDI	GACNNNNNNGTC	1 cut(s)	326
EciI	GGCGGA	1 cut(s)	638
Ecl136II	GAGCTC	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	222, 377
Eco31I	GGTCTC	1 cut(s)	722
Eco47I	GGWCC	1 cut(s)	768
Eco53kI	GAGCTC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	67
EcoT22I	ATGCAT	3 cut(s)	441, 528, 532
EcoT38I	GRGCYC	2 cut(s)	222, 377
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	7 cut(s)	71, 208, 526, 530, 545, 674, 910
FaqI	GGGAC	2 cut(s)	167, 347
FatI	CATG	7 cut(s)	67, 204, 522, 526, 541, 670, 906
Fnu4HI	GCNGC	4 cut(s)	548, 591, 757, 760
FokI	GGATG	3 cut(s)	238, 344, 639
FriOI	GRGCYC	2 cut(s)	222, 377
Fsp4HI	GCNGC	4 cut(s)	548, 591, 757, 760
GluI	GCNGC	4 cut(s)	548, 591, 757, 760
GsuI	CTGGAG	1 cut(s)	854
HaeIII	GGCC	3 cut(s)	66, 342, 676
HapII	CCGG	3 cut(s)	311, 560, 1069
Hin1II	CATG	7 cut(s)	71, 208, 526, 530, 545, 674, 910
HindIII	AAGCTT	3 cut(s)	188, 846, 890
HinfI	GANTC	4 cut(s)	662, 858, 932, 1058
HpaII	CCGG	3 cut(s)	311, 560, 1069
HphI	GGTGA	1 cut(s)	765
Hpy166II	GTNNAC	2 cut(s)	555, 977
Hpy188III	TCNNGA	6 cut(s)	137, 361, 367, 469, 496, 536
Hpy8I	GTNNAC	2 cut(s)	555, 977
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	2 cut(s)	323, 926
HpyCH4IV	ACGT	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	100, 316, 399, 701
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	7 cut(s)	71, 208, 526, 530, 545, 674, 910
KpnI	GGTACC	1 cut(s)	1075
KspI	CCGCGG	2 cut(s)	760, 968
Kzo9I	GATC	4 cut(s)	79, 170, 363, 498
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	2 cut(s)	534, 577
LweI	GCATC	5 cut(s)	161, 426, 442, 448, 528
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	2 cut(s)	739, 859
MalI	GATC	4 cut(s)	81, 172, 365, 500
MboI	GATC	4 cut(s)	79, 170, 363, 498
MboII	GAAGA	7 cut(s)	60, 116, 241, 256, 883, 886, 887
MhlI	GDGCHC	3 cut(s)	222, 377, 888
MluCI	AATT	3 cut(s)	26, 258, 430
MlyI	GAGTC	1 cut(s)	867
MmeI	TCCRAC	3 cut(s)	583, 798, 1072
MnlI	CCTC	8 cut(s)	160, 244, 289, 363, 420, 599, 781, 805
Mph1103I	ATGCAT	3 cut(s)	441, 528, 532
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	1 cut(s)	782
MspA1I	CMGCKG	3 cut(s)	445, 759, 967
MspI	CCGG	3 cut(s)	311, 560, 1069
MspR9I	CCNGG	1 cut(s)	62
Mva1269I	GAATGC	2 cut(s)	415, 625
MvaI	CCWGG	1 cut(s)	62
MvnI	CGCG	2 cut(s)	759, 967
NcoI	CCATGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	79, 170, 363, 498
NlaIII	CATG	7 cut(s)	71, 208, 526, 530, 545, 674, 910
NlaIV	GGNNCC	2 cut(s)	885, 1073
NmuCI	GTSAC	2 cut(s)	739, 859
NsiI	ATGCAT	3 cut(s)	441, 528, 532
NspI	RCATGY	2 cut(s)	530, 910
PaeI	GCATGC	1 cut(s)	530
PctI	GAATGC	2 cut(s)	415, 625
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	662, 932, 1058
PflFI	GACNNNGTC	1 cut(s)	806
PkrI	GCNGC	4 cut(s)	549, 592, 758, 761
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
Psp124BI	GAGCTC	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	885, 1073
PspPI	GGNCC	4 cut(s)	64, 341, 674, 768
PsyI	GACNNNGTC	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	445
RsaI	GTAC	3 cut(s)	347, 839, 1073
RsaNI	GTAC	3 cut(s)	346, 838, 1072
SacI	GAGCTC	1 cut(s)	377
SacII	CCGCGG	2 cut(s)	760, 968
SaqAI	TTAA	1 cut(s)	782
SatI	GCNGC	4 cut(s)	548, 591, 757, 760
Sau3AI	GATC	4 cut(s)	79, 170, 363, 498
Sau96I	GGNCC	4 cut(s)	64, 341, 674, 768
ScaI	AGTACT	1 cut(s)	839
SchI	GAGTC	1 cut(s)	867
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	222, 377, 888
SfaNI	GCATC	5 cut(s)	161, 426, 442, 448, 528
Sfr303I	CCGCGG	2 cut(s)	760, 968
SgrBI	CCGCGG	2 cut(s)	760, 968
SinI	GGWCC	1 cut(s)	768
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SphI	GCATGC	1 cut(s)	530
Sse9I	AATT	3 cut(s)	26, 258, 430
SsiI	CCGC	6 cut(s)	455, 649, 757, 759, 965, 967
SstI	GAGCTC	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	323, 926
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	7 cut(s)	159, 212, 381, 417, 633, 665, 912
TasI	AATT	3 cut(s)	26, 258, 430
TatI	WGTACW	1 cut(s)	837
TauI	GCSGC	2 cut(s)	759, 762
TfiI	GAWTC	3 cut(s)	662, 932, 1058
Tru1I	TTAA	1 cut(s)	782
Tru9I	TTAA	1 cut(s)	782
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	2 cut(s)	739, 859
TseI	GCWGC	2 cut(s)	547, 590
Tsp45I	GTSAC	2 cut(s)	739, 859
TspDTI	ATGAA	5 cut(s)	108, 221, 346, 596, 631
TspRI	CASTG	1 cut(s)	984
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	1 cut(s)	768
XapI	RAATTY	1 cut(s)	430
XceI	RCATGY	2 cut(s)	530, 910
XmnI	GAANNNNTTC	1 cut(s)	108
ZrmI	AGTACT	1 cut(s)	839
Zsp2I	ATGCAT	3 cut(s)	441, 528, 532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.