Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

58014263 .. 58016173

Gene Structure 1911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAAACTCGAAGACTTTCTAATGCAACGAAGCGAGGACAAGCAGAAGAGACTTGTTCTTGAGGAAGAGGTTCTGAAATTGCAAGAAGAGTTGGATGGGGAGCAAACACTTAATAGGGTTCTTCACTGCGCACTTCATGGACCTGCTCTATCACATCCATGTCTTCTCTCATTGCTTCCACCTCAGGTTCAGGAACTATTTTCAGAGCTGGAAATGGTGGAAGACGAGATCAGTGGGCTTGAAAGAAAAGTCGAAGAGCTGAAACTGATGTTGTACAAAGAGAGAGCTCAAACAAGAGAGTGGGAAATGCATAGGAGGCAGTGGGAACAGAATCAGTCATTCTTCAGAGCTGGAAATCAGTCACTGATTGAGGGATCGAGATCGCAGAACTACGAAGCATTGAGAAAAGAAAAAAGGAGAGTAAGGGATAGAAGAGCCTCTGTTGGTTCTGCTTCTGATATGCAAAGGTGGAATTTCACAAAAACTGATGGAGAGATTGCTGAAATGTCAAGGAGACTAAGCAGAAGAAGCAGAATTCAAAGCATTATGAACAATGAAAGTGGCATTCAGAAACCAAATGAACTCTCGGAACAGTTGCTCAAGTGCCTTATAGGCATATTTCTTGAACTAAAACAGACCTCATTGGAAAAAGAGGGGTCATCATCTGTTGTGCCAAAGCTTACTCTCTCTTGTATGAACTCAAAAGGGTTCATGCCGAAAACCTCATTCAACTGCAAATCATCAGCGCTCTTCAACTACAATACATCACATGTTGACCCTTATTGCATTTTGCCAGATATAGATGGTGCTGTCCGGGACGTTGGCCCATATAAGAACTTCATCCAAATCACAAGAAGCTCGTTAGACATCAGACGCTTATCAGATTGTTCAAATGGAATTGAAAAATTGAGGAAATTGATGCGTCAATTGTGTGATGTGGACTTGACTTGCTTGACATACAAGCAGAAGCTAGCATTTTGGATCAATATCTACAATGCCTGCATCATGCATGCATTTCTCGATCATGGGTTGCCTTCCACACAAGAAAAGCTACTTTTACTTATGAACAAGGCTGCACTGAATGTTGGCGGCATAGTGCTCAATGCTCTAGCTATTGAGCATTTCATACTCCGACATCCATCAGAAACAAAACAAGTAAGTGAAACCATATCCACCCAAATAATACTTGTTGAACCTTCCTCTATTTTATCTGATCAATTTACATCTCAATTAGTAGGGACCTGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

416

Amino Acids

47.76

Weight (kDa)

7.55

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lzipper-MIP1	PF14389	14 - 94	1.1e-17	Leucine-zipper of ternary complex factor MIP1
DUF547	PF04784	317 - 384	6.3e-21	Protein of unknown function, DUF547

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	151
AciI	CCGC	1 cut(s)	1089
AclWI	GGATC	2 cut(s)	382, 989
AcsI	RAATTY	2 cut(s)	472, 534
AcuI	CTGAAG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	275
AfeI	AGCGCT	1 cut(s)	747
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	8 cut(s)	242, 539, 626, 730, 754, 891, 902, 1193
AluBI	AGCT	9 cut(s)	208, 259, 287, 350, 679, 858, 970, 1051, 1112
AluI	AGCT	9 cut(s)	208, 259, 287, 350, 679, 858, 970, 1051, 1112
Alw21I	GWGCWC	2 cut(s)	289, 1101
Alw26I	GTCTC	2 cut(s)	43, 508
AlwI	GGATC	2 cut(s)	382, 989
AlwNI	CAGNNNCTG	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	747
AoxI	GGCC	1 cut(s)	823
ApeKI	GCWGC	1 cut(s)	1073
ApoI	RAATTY	2 cut(s)	472, 534
Asp700I	GAANNNNTTC	2 cut(s)	15, 69
AspLEI	GCGC	2 cut(s)	131, 748
AspS9I	GGNCC	3 cut(s)	140, 824, 1239
AsuC2I	CCSGG	1 cut(s)	815
AsuNHI	GCTAGC	1 cut(s)	970
AvaII	GGWCC	2 cut(s)	140, 1239
AxyI	CCTNAGG	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	3 cut(s)	18, 155, 228
Bbv12I	GWGCWC	2 cut(s)	289, 1101
BbvI	GCAGC	1 cut(s)	1060
BccI	CCATC	4 cut(s)	89, 482, 797, 1147
BclI	TGATCA	1 cut(s)	1213
BcnI	CCSGG	1 cut(s)	815
BcoDI	GTCTC	2 cut(s)	43, 508
BfaI	CTAG	2 cut(s)	971, 1109
BfoI	RGCGCY	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	151
BglI	GCCNNNNNGGC	1 cut(s)	612
BisI	GCNGC	2 cut(s)	1074, 1090
BlsI	GCNGC	2 cut(s)	1075, 1091
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	2 cut(s)	140, 1239
BmgT120I	GGNCC	3 cut(s)	140, 824, 1239
BmiI	GGNNCC	1 cut(s)	1240
BmrFI	CCNGG	1 cut(s)	815
BmsI	GCATC	2 cut(s)	909, 1011
BmtI	GCTAGC	1 cut(s)	974
BpiI	GAAGAC	3 cut(s)	18, 155, 228
BpuEI	CTTGAG	2 cut(s)	80, 584
BpuMI	CCSGG	1 cut(s)	815
BsaBI	GATNNNNATC	2 cut(s)	379, 986
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	170
Bse8I	GATNNNNATC	2 cut(s)	379, 986
BseGI	GGATG	4 cut(s)	100, 154, 840, 1135
BseJI	GATNNNNATC	2 cut(s)	379, 986
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	1060
BsgI	GTGCAG	1 cut(s)	1059
BshFI	GGCC	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	289, 1101
BsiSI	CCGG	1 cut(s)	814
BslFI	GGGAC	1 cut(s)	830
BsmAI	GTCTC	2 cut(s)	43, 508
BsmFI	GGGAC	1 cut(s)	830
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	825
Bsp1286I	GDGCHC	2 cut(s)	289, 1101
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
BspACI	CCGC	1 cut(s)	1089
BspANI	GGCC	1 cut(s)	825
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	1240
BspMI	ACCTGC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	2 cut(s)	382, 989
BspQI	GCTCTTC	3 cut(s)	249, 427, 755
BsrDI	GCAATG	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	273
BssMI	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	6 cut(s)	41, 60, 81, 249, 427, 755
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	3 cut(s)	972, 1000, 1011
BstDEI	CTNAG	2 cut(s)	183, 518
BstF5I	GGATG	4 cut(s)	100, 154, 840, 1135
BstH2I	RGCGCY	1 cut(s)	749
BstHHI	GCGC	2 cut(s)	131, 748
BstKTI	GATC	6 cut(s)	231, 377, 383, 984, 1024, 1216
BstMAI	GTCTC	2 cut(s)	43, 508
BstMBI	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 528, 612
BstNSI	RCATGY	2 cut(s)	773, 1013
BstSCI	CCNGG	1 cut(s)	813
BstV1I	GCAGC	1 cut(s)	1060
BstV2I	GAAGAC	3 cut(s)	18, 155, 228
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	825
BtsCI	GGATG	4 cut(s)	100, 154, 840, 1135
BtsI	GCAGTG	2 cut(s)	124, 326
BtsIMutI	CAGTG	5 cut(s)	124, 238, 326, 362, 1076
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	3 cut(s)	972, 1000, 1011
CaiI	CAGNNNCTG	1 cut(s)	364
CfoI	GCGC	2 cut(s)	131, 748
Cfr13I	GGNCC	3 cut(s)	140, 824, 1239
CseI	GACGC	2 cut(s)	882, 911
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	7 cut(s)	137, 159, 712, 770, 1006, 1010, 1025
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	183, 518
DpnI	GATC	6 cut(s)	230, 376, 382, 983, 1023, 1215
DpnII	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
Eam1104I	CTCTTC	6 cut(s)	41, 60, 81, 249, 427, 755
EarI	CTCTTC	6 cut(s)	41, 60, 81, 249, 427, 755
Ecl136II	GAGCTC	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	140, 1239
Eco47III	AGCGCT	1 cut(s)	747
Eco53kI	GAGCTC	1 cut(s)	287
Eco57I	CTGAAG	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	287
EcoO109I	RGGNCCY	1 cut(s)	1239
EcoRI	GAATTC	1 cut(s)	534
EcoT22I	ATGCAT	3 cut(s)	312, 1011, 1015
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	7 cut(s)	140, 162, 715, 773, 1009, 1013, 1028
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	7 cut(s)	136, 158, 711, 769, 1005, 1009, 1024
FbaI	TGATCA	1 cut(s)	1213
Fnu4HI	GCNGC	2 cut(s)	1074, 1090
FokI	GGATG	4 cut(s)	107, 141, 827, 1122
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	1074, 1090
FspBI	CTAG	2 cut(s)	971, 1109
FspI	TGCGCA	1 cut(s)	130
GlaI	GCGC	2 cut(s)	130, 747
GluI	GCNGC	2 cut(s)	1074, 1090
HaeII	RGCGCY	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	825
HapII	CCGG	1 cut(s)	814
HgaI	GACGC	2 cut(s)	882, 911
HhaI	GCGC	2 cut(s)	131, 748
Hin1II	CATG	7 cut(s)	140, 162, 715, 773, 1009, 1013, 1028
Hin6I	GCGC	2 cut(s)	129, 746
HinP1I	GCGC	2 cut(s)	129, 746
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	814
Hpy166II	GTNNAC	2 cut(s)	775, 940
Hpy188III	TCNNGA	5 cut(s)	59, 191, 378, 623, 1019
Hpy8I	GTNNAC	2 cut(s)	775, 940
HpyAV	CCTTC	2 cut(s)	1044, 1206
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 528, 612
HpyF3I	CTNAG	2 cut(s)	183, 518
HpySE526I	ACGT	1 cut(s)	819
Hsp92II	CATG	7 cut(s)	140, 162, 715, 773, 1009, 1013, 1028
HspAI	GCGC	2 cut(s)	129, 746
Ksp22I	TGATCA	1 cut(s)	1213
Kzo9I	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
LguI	GCTCTTC	3 cut(s)	249, 427, 755
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	156, 170, 176, 194, 336, 807, 827, 1012
Lsp1109I	GCAGC	1 cut(s)	1060
LweI	GCATC	2 cut(s)	909, 1011
MaeI	CTAG	2 cut(s)	971, 1109
MaeII	ACGT	1 cut(s)	819
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	6 cut(s)	230, 376, 382, 983, 1023, 1215
MboI	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
MfeI	CAATTG	1 cut(s)	926
MhlI	GDGCHC	2 cut(s)	289, 1101
MluCI	AATT	9 cut(s)	77, 472, 534, 897, 905, 914, 926, 1217, 1229
MmeI	TCCRAC	2 cut(s)	72, 1156
Mph1103I	ATGCAT	3 cut(s)	312, 1011, 1015
MroXI	GAANNNNTTC	2 cut(s)	15, 69
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	1 cut(s)	814
MspR9I	CCNGG	1 cut(s)	815
MunI	CAATTG	1 cut(s)	926
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	316, 528, 612
NciI	CCSGG	1 cut(s)	815
NdeII	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
NheI	GCTAGC	1 cut(s)	970
NlaIII	CATG	7 cut(s)	140, 162, 715, 773, 1009, 1013, 1028
NlaIV	GGNNCC	1 cut(s)	1240
NmuCI	GTSAC	1 cut(s)	360
NsbI	TGCGCA	1 cut(s)	130
NsiI	ATGCAT	3 cut(s)	312, 1011, 1015
NspI	RCATGY	2 cut(s)	773, 1013
PaeI	GCATGC	1 cut(s)	1013
PciI	ACATGT	1 cut(s)	769
PciSI	GCTCTTC	3 cut(s)	249, 427, 755
PctI	GAATGC	1 cut(s)	564
PdmI	GAANNNNTTC	2 cut(s)	15, 69
PfeI	GAWTC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	2 cut(s)	1075, 1091
PpuMI	RGGWCCY	1 cut(s)	1239
PscI	ACATGT	1 cut(s)	769
Psp124BI	GAGCTC	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	1239
PspN4I	GGNNCC	1 cut(s)	1240
PspPI	GGNCC	3 cut(s)	140, 824, 1239
PspPPI	RGGWCCY	1 cut(s)	1239
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	289
SapI	GCTCTTC	3 cut(s)	249, 427, 755
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	1074, 1090
Sau3AI	GATC	6 cut(s)	228, 374, 380, 981, 1021, 1213
Sau96I	GGNCC	3 cut(s)	140, 824, 1239
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	2 cut(s)	289, 1101
SfaNI	GCATC	2 cut(s)	909, 1011
SinI	GGWCC	2 cut(s)	140, 1239
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	59, 599
SmoI	CTYRAG	2 cut(s)	59, 599
SphI	GCATGC	1 cut(s)	1013
Sse9I	AATT	9 cut(s)	77, 472, 534, 897, 905, 914, 926, 1217, 1229
SsiI	CCGC	1 cut(s)	1089
SspMI	CTAG	2 cut(s)	971, 1109
SstI	GAGCTC	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	813
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	822
TaqI	TCGA	4 cut(s)	9, 252, 377, 1020
TasI	AATT	9 cut(s)	77, 472, 534, 897, 905, 914, 926, 1217, 1229
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	1092
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	5 cut(s)	131, 238, 326, 369, 1083
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	1073
Tsp45I	GTSAC	1 cut(s)	360
TspRI	CASTG	5 cut(s)	131, 238, 326, 369, 1083
VpaK11BI	GGWCC	2 cut(s)	140, 1239
XapI	RAATTY	2 cut(s)	472, 534
XceI	RCATGY	2 cut(s)	773, 1013
XmnI	GAANNNNTTC	2 cut(s)	15, 69
XspI	CTAG	2 cut(s)	971, 1109
Zsp2I	ATGCAT	3 cut(s)	312, 1011, 1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.