Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

21100209 .. 21100957

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAATTAGAAGACTTTCTAATGCAACGAAACGAGGAGGAGCAGAGAAGACTTGATCTTGAGGAAGAGGTTAAGAAATTGCAGGCGAAGTTGGAAGGAGAACAAACACTCGGCAGGTTTCTGCATTGTGCACTTCATGGACCTGTTCAGTCCCATCCACGTCTTTTGTCCTTGCTTCCAGCTCAGGTTCAGGAGCTGTTTTCGGAGATTGCAATGGTAGAGGAAGAGATAGGTCAACTTGACAGAAAAGTCGAAGAGCTGAAACTGAGGTTGTACAAAGAAAGGGAACAAACAAGAGAATGGAAAGTGCATATGTGGCAATTAGGGCAACAGAAGCAGTCGTTGTGTAGAGTGGGAAACCAGTCAGTGGTAAATGAAGAGAGATGCAGATCGGAAGCTTTGAGAAATTTGAGAAAAGAAAGAAGGTTGAAGGATAGAAGAGCATATGTGGGTTCTGCAGCAGATATCCCAAGGTGGAATTTCAGAGAGTCCGATGGTAAACTGCTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

171

Amino Acids

20.26

Weight (kDa)

8.45

Isoelectric Point (pI)

59.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	367
AcsI	RAATTY	2 cut(s)	406, 478
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	430
AjiI	CACGTC	1 cut(s)	161
AluBI	AGCT	4 cut(s)	182, 196, 259, 398
AluI	AGCT	4 cut(s)	182, 196, 259, 398
Alw21I	GWGCWC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	196
ApaLI	GTGCAC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	406, 478
Asp700I	GAANNNNTTC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	133
BbsI	GAAGAC	2 cut(s)	18, 55
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	162, 488
BfmI	CTRYAG	1 cut(s)	456
BfuAI	ACCTGC	1 cut(s)	105
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	140
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	2 cut(s)	18, 55
Bpu10I	CCTNAGC	1 cut(s)	183
BpuEI	CTTGAG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	361
Bse3DI	GCAATG	1 cut(s)	219
Bse8I	GATNNNNATC	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	197, 257
BseNI	ACTGG	1 cut(s)	361
BseRI	GAGGAG	2 cut(s)	50, 53
BseSI	GKGCMC	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	55, 389
BspCNI	CTCAG	2 cut(s)	196, 258
BspMAI	CTGCAG	1 cut(s)	460
BspMI	ACCTGC	1 cut(s)	105
BspQI	GCTCTTC	2 cut(s)	249, 433
BsrDI	GCAATG	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	2 cut(s)	55, 389
BssT1I	CCWWGG	1 cut(s)	470
Bst6I	CTCTTC	5 cut(s)	60, 219, 249, 372, 433
BstAUI	TGTACA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	183, 266
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	58, 392
BstMBI	GATC	2 cut(s)	55, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 325, 334
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	133
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	2 cut(s)	18, 55
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	182, 196, 259, 398
CviKI_1	RGCY	4 cut(s)	182, 196, 259, 398
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	183, 266
DpnI	GATC	2 cut(s)	57, 391
DpnII	GATC	2 cut(s)	55, 389
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	5 cut(s)	60, 219, 249, 372, 433
EarI	CTCTTC	5 cut(s)	60, 219, 249, 372, 433
Eco130I	CCWWGG	1 cut(s)	470
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	470
FaeI	CATG	1 cut(s)	140
FaiI	YATR	5 cut(s)	138, 312, 314, 445, 447
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	1 cut(s)	136
FauNDI	CATATG	2 cut(s)	312, 445
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	459
Hin1II	CATG	1 cut(s)	140
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	396
HinfI	GANTC	1 cut(s)	488
Hpy166II	GTNNAC	3 cut(s)	131, 236, 500
Hpy188I	TCNGA	4 cut(s)	205, 394, 485, 493
Hpy188III	TCNNGA	2 cut(s)	59, 191
Hpy8I	GTNNAC	3 cut(s)	131, 236, 500
HpyAV	CCTTC	3 cut(s)	89, 417, 424
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	8 cut(s)	25, 82, 124, 131, 212, 310, 387, 458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 325, 334
HpyF3I	CTNAG	2 cut(s)	183, 266
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	55, 389
LguI	GCTCTTC	2 cut(s)	249, 433
LmnI	GCTCC	2 cut(s)	40, 193
LpnPI	CCDG	7 cut(s)	68, 100, 156, 170, 176, 192, 374
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	1 cut(s)	374
MaeII	ACGT	1 cut(s)	160
MalI	GATC	2 cut(s)	57, 391
MboI	GATC	2 cut(s)	55, 389
MboII	GAAGA	7 cut(s)	23, 60, 77, 236, 266, 389, 450
MhlI	GDGCHC	1 cut(s)	133
MluCI	AATT	5 cut(s)	5, 77, 320, 406, 478
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	6 cut(s)	28, 31, 55, 61, 214, 261
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	72, 511
MwoI	GCNNNNNNNGC	3 cut(s)	316, 325, 334
NdeI	CATATG	2 cut(s)	312, 445
NdeII	GATC	2 cut(s)	55, 389
NlaIII	CATG	1 cut(s)	140
NmeAIII	GCCGAG	1 cut(s)	90
PciSI	GCTCTTC	2 cut(s)	249, 433
PdmI	GAANNNNTTC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SapI	GCTCTTC	2 cut(s)	249, 433
SaqAI	TTAA	2 cut(s)	72, 511
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	55, 389
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	374
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	5 cut(s)	5, 77, 320, 406, 478
StyI	CCWWGG	1 cut(s)	470
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	252
TasI	AATT	5 cut(s)	5, 77, 320, 406, 478
TatI	WGTACW	1 cut(s)	273
Tru1I	TTAA	2 cut(s)	72, 511
Tru9I	TTAA	2 cut(s)	72, 511
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	17, 125, 390
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	367
VneI	GTGCAC	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	2 cut(s)	406, 478
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.