Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000395.1

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

79893 .. 81076

Gene Structure 1184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000395.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgcaacgaagcgaggacaagcagaagagacttgttcttgaggaagaggttctgaaattgcaagaagagttggatggggagcaaacacttaatagggttcttcactgcgcacttcatggacctgctctatcacatccatgtcttctctcattgctaccacctcaggttcaggaactattttcagagctggaaatggtggaagacgagatcagtgggcttgaaagaaaagtcgaagagctgaaactgatgttgtacaaagagagagctcaaacaagagagtgggaaatgcataggaggcagtgggaacagaatcaatcattcttcagagctggaaatcagtcactgattgagggatcgagatcgcagaactacgaagcattgagaaaagaaaaaaggagagtaagggatagaagagcctctgttggttctgcttctgatatgcaaaggtggaatttcacaaaaactgatggagagattgctgaaatgtcaaggagactaagcagaagaagcagaattcaaagcattatgaacaatgaaagtggcattcagaaaccaaatgaactctcggaacagttgctcaagtgccttataggcatatttcttgaactaaaacagacctcattggaaaaagaggggtcatcatctgttgtgccaaagcttactctctcttgtatgaactcaaaagggttcatgccgaaaacctcattcaactgcaaatcatcagcgctcttcaactacaatacatcacatgttgacccttattgcattttgccagatatagatggtgctgtccgggacgttggcccatataagaacttcatccaaatcacaagaagctcgttagacatcagacgcttatcagattgttcaaatggaattgaaaaattgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

297

Amino Acids

34.37

Weight (kDa)

8.41

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	109
Acc36I	ACCTGC	1 cut(s)	130
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	451, 513
AcuI	CTGAAG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	726
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	7 cut(s)	221, 518, 605, 709, 733, 870, 881
AluBI	AGCT	6 cut(s)	187, 238, 266, 329, 658, 837
AluI	AGCT	6 cut(s)	187, 238, 266, 329, 658, 837
Alw21I	GWGCWC	1 cut(s)	268
Alw26I	GTCTC	2 cut(s)	22, 487
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	343
Aor51HI	AGCGCT	1 cut(s)	726
AoxI	GGCC	1 cut(s)	802
ApoI	RAATTY	2 cut(s)	451, 513
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	2 cut(s)	110, 727
AspS9I	GGNCC	2 cut(s)	119, 803
AsuC2I	CCSGG	1 cut(s)	794
AvaII	GGWCC	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	134, 207
Bbv12I	GWGCWC	1 cut(s)	268
BccI	CCATC	3 cut(s)	68, 461, 776
BcnI	CCSGG	1 cut(s)	794
BcoDI	GTCTC	2 cut(s)	22, 487
BfoI	RGCGCY	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	130
BglI	GCCNNNNNGGC	1 cut(s)	591
Bme1390I	CCNGG	1 cut(s)	794
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 803
BmrFI	CCNGG	1 cut(s)	794
BpiI	GAAGAC	2 cut(s)	134, 207
BpuEI	CTTGAG	2 cut(s)	59, 563
BpuMI	CCSGG	1 cut(s)	794
BsaBI	GATNNNNATC	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	358
BseGI	GGATG	3 cut(s)	79, 133, 819
BseJI	GATNNNNATC	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	176
BshFI	GGCC	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	809
BsmAI	GTCTC	2 cut(s)	22, 487
BsmFI	GGGAC	1 cut(s)	809
BsmI	GAATGC	1 cut(s)	543
BsnI	GGCC	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	207, 353, 359
BspANI	GGCC	1 cut(s)	804
BspCNI	CTCAG	1 cut(s)	175
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	361
BspQI	GCTCTTC	3 cut(s)	228, 406, 734
BsrDI	GCAATG	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	252
BssMI	GATC	3 cut(s)	207, 353, 359
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	6 cut(s)	20, 39, 60, 228, 406, 734
BstAUI	TGTACA	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	162, 497
BstF5I	GGATG	3 cut(s)	79, 133, 819
BstH2I	RGCGCY	1 cut(s)	728
BstHHI	GCGC	2 cut(s)	110, 727
BstKTI	GATC	3 cut(s)	210, 356, 362
BstMAI	GTCTC	2 cut(s)	22, 487
BstMBI	GATC	3 cut(s)	207, 353, 359
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 507, 591
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	792
BstV2I	GAAGAC	2 cut(s)	134, 207
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	804
BtsCI	GGATG	3 cut(s)	79, 133, 819
BtsI	GCAGTG	2 cut(s)	103, 305
BtsIMutI	CAGTG	4 cut(s)	103, 217, 305, 341
BveI	ACCTGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	343
CfoI	GCGC	2 cut(s)	110, 727
Cfr13I	GGNCC	2 cut(s)	119, 803
CseI	GACGC	1 cut(s)	861
Csp6I	GTAC	1 cut(s)	253
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	4 cut(s)	116, 138, 691, 749
CviJI	RGCY	9 cut(s)	187, 217, 238, 266, 329, 416, 658, 804, 837
CviKI_1	RGCY	9 cut(s)	187, 217, 238, 266, 329, 416, 658, 804, 837
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	162, 497
DpnI	GATC	3 cut(s)	209, 355, 361
DpnII	GATC	3 cut(s)	207, 353, 359
Eam1104I	CTCTTC	6 cut(s)	20, 39, 60, 228, 406, 734
EarI	CTCTTC	6 cut(s)	20, 39, 60, 228, 406, 734
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	726
Eco53kI	GAGCTC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	307
Eco81I	CCTNAGG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	268
FaeI	CATG	4 cut(s)	119, 141, 694, 752
FaqI	GGGAC	1 cut(s)	809
FatI	CATG	4 cut(s)	115, 137, 690, 748
FokI	GGATG	3 cut(s)	86, 120, 806
FriOI	GRGCYC	1 cut(s)	268
FspI	TGCGCA	1 cut(s)	109
GlaI	GCGC	2 cut(s)	109, 726
HaeII	RGCGCY	1 cut(s)	728
HaeIII	GGCC	1 cut(s)	804
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	1 cut(s)	861
HhaI	GCGC	2 cut(s)	110, 727
Hin1II	CATG	4 cut(s)	119, 141, 694, 752
Hin6I	GCGC	2 cut(s)	108, 725
HinP1I	GCGC	2 cut(s)	108, 725
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	793
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	8 cut(s)	54, 184, 326, 436, 549, 568, 851, 862
Hpy188III	TCNNGA	4 cut(s)	38, 170, 357, 602
Hpy8I	GTNNAC	1 cut(s)	754
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	1 cut(s)	798
HpyCH4V	TGCA	6 cut(s)	4, 61, 289, 442, 714, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 507, 591
HpyF3I	CTNAG	2 cut(s)	162, 497
HpySE526I	ACGT	1 cut(s)	798
Hsp92II	CATG	4 cut(s)	119, 141, 694, 752
HspAI	GCGC	2 cut(s)	108, 725
Kzo9I	GATC	3 cut(s)	207, 353, 359
LguI	GCTCTTC	3 cut(s)	228, 406, 734
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	7 cut(s)	135, 149, 155, 173, 315, 786, 806
MaeII	ACGT	1 cut(s)	798
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	209, 355, 361
MboI	GATC	3 cut(s)	207, 353, 359
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	5 cut(s)	56, 451, 513, 876, 884
MmeI	TCCRAC	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	291
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	136
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	1 cut(s)	794
Mva1269I	GAATGC	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	295, 507, 591
NciI	CCSGG	1 cut(s)	794
NdeII	GATC	3 cut(s)	207, 353, 359
NlaIII	CATG	4 cut(s)	119, 141, 694, 752
NmuCI	GTSAC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	291
NspI	RCATGY	1 cut(s)	752
PciI	ACATGT	1 cut(s)	748
PciSI	GCTCTTC	3 cut(s)	228, 406, 734
PctI	GAATGC	1 cut(s)	543
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	792
PscI	ACATGT	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	119, 803
PstNI	CAGNNNCTG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	268
SapI	GCTCTTC	3 cut(s)	228, 406, 734
SaqAI	TTAA	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	207, 353, 359
Sau96I	GGNCC	2 cut(s)	119, 803
ScrFI	CCNGG	1 cut(s)	794
SduI	GDGCHC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	38, 578
SmoI	CTYRAG	2 cut(s)	38, 578
Sse9I	AATT	5 cut(s)	56, 451, 513, 876, 884
SstI	GAGCTC	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	792
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	1 cut(s)	801
TaqI	TCGA	2 cut(s)	231, 356
TasI	AATT	5 cut(s)	56, 451, 513, 876, 884
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	4 cut(s)	110, 217, 305, 348
TseFI	GTSAC	1 cut(s)	339
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	7 cut(s)	104, 542, 549, 573, 679, 689, 808
TspRI	CASTG	4 cut(s)	110, 217, 305, 348
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	451, 513
XceI	RCATGY	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.