Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004953

Physical Location & Seq

Genomic Coordinates Forward (+)

25803863 .. 25805408

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G236600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAAATTCGAAGACTTTCTGATGCAAAGAAGCGAGGAGAAACAGAAAAGATTTGATCTTGAGGAAGAGGTTATGAAATTACAATCAGAGTTAGATGGACAACAAACACTAAACAGGTTTCTGCATTGTGCTCTTCATGGACCTCTGCTGTCACATCCATGCCTTTTATCATTGCTTCCACCTCAGGTTCAGGTGCTATTTTCAGAGTTGGCAATGGTGGAAGAAGAGATTAGTAGGCTGGAAAGAAAAGTTGAAGAGCTGAAATTGAGGTTGTACCAAGAGAGGGAACATACCAAAGAATGGGAAGTGCAGAGGAGGCAAGGGCAACAGAATCACTTGCTGTGCAGAGTGGGAAATCAGTCAGTGCTCAATGAAGAGAGATGTAGTAGATCCCAGAACTATGAGGCACTGAGAAAAGAAAGGAGGATGAAGAATAGAAGAGCCTCTGTGGATTCTGCATCAGATTTCCAAAGGTGGAATTTCCCAAAGTCAGATGGAGAAATTGCTGAAATGTCAAGGAAGCTAAGTGGGAGAAGCAGAAACCAGGGCAATGTGGATATTAATGAAACTGGCATTAGTCTGAAACCAAATGAAATCTCAGAAGAAGTGCTCAAGTGCCTTATAGGCATATTTCTTGACCTAAAACAGACATCATTGGACAAAGAGGGATCATCTGTGGTCCCAAAGCTAACTCTCTCCTGCATGAACTCAAAAGGGTTCATGGCAAAAACCTCATTCAACTGCAAATCATCCACAGTGTTCTTCAACTACAACACATCCAATGTTGACCCTTACTGCATATTACCGGATATAGATGGCGCTGTCCGGGACGTTGGCCCGTACAAGAACTTCATCCAAATCAAAAGAAGCTCATTAGACATCAGCCGCTTATCAGACTGTTTGACTGGAATTGGAAAATTGAGGTTGCTTACAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF547 Lzipper-MIP1

Protein Analysis

314

Amino Acids

36.07

Weight (kDa)

8.31

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT2G39690 AT3G47675
fragaria_vesca	FvH4_7g22670 FvH4_7g22670
malus_domestica	MD01G1135300.v1.1 MD07G1200000.v1.1
prunus_persica	Prupe.2G236600_v2.0.a1 Prupe.2G236700_v2.0.a1 Prupe.2G236700_v2.0.a1
pyrus_communis	pycom01g15590 pycom01g15600 pycom07g18670 pycom07g18680
rosa_chinensis	RchiOBHm_Chr1g0367751
rosa_laevigata	RLG00000027266
rosa_multiflora	Rmu_ssc0000395.1_g000019
rosa_roxburghii	Rroxscaffold_4G00289260
rosa_rugosa	Rorug01G0336400
rosa_samantha	Rh1AG343500 Rh1BG305300 Rh1CG320900 Rh1DG337500
rosa_wichuraiana	Rw1G030570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	300
AciI	CCGC	1 cut(s)	886
AclWI	GGATC	2 cut(s)	384, 676
AcsI	RAATTY	2 cut(s)	5, 478
AfaI	GTAC	2 cut(s)	275, 842
AfiI	CCNNNNNNNGG	2 cut(s)	283, 300
AgsI	TTSAA	3 cut(s)	254, 739, 766
AjnI	CCWGG	1 cut(s)	543
AluBI	AGCT	4 cut(s)	259, 523, 688, 870
AluI	AGCT	4 cut(s)	259, 523, 688, 870
Alw21I	GWGCWC	3 cut(s)	133, 369, 612
AlwI	GGATC	2 cut(s)	384, 676
AoxI	GGCC	1 cut(s)	835
ApoI	RAATTY	2 cut(s)	5, 478
AseI	ATTAAT	1 cut(s)	561
Asp700I	GAANNNNTTC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	821
AspS9I	GGNCC	3 cut(s)	140, 679, 836
AsuC2I	CCSGG	1 cut(s)	827
AsuII	TTCGAA	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	140, 679
AxyI	CCTNAGG	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	833, 865
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	3 cut(s)	133, 369, 612
BccI	CCATC	3 cut(s)	89, 488, 809
BciT130I	CCWGG	1 cut(s)	545
BcnI	CCSGG	1 cut(s)	827
BfoI	RGCGCY	1 cut(s)	822
BglI	GCCNNNNNGGC	1 cut(s)	624
BisI	GCNGC	1 cut(s)	886
BlsI	GCNGC	1 cut(s)	887
Bme1390I	CCNGG	2 cut(s)	545, 827
Bme18I	GGWCC	2 cut(s)	140, 679
BmgT120I	GGNCC	3 cut(s)	140, 679, 836
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	2 cut(s)	545, 827
BmsI	GCATC	2 cut(s)	12, 467
BpiI	GAAGAC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	9
BpuEI	CTTGAG	2 cut(s)	80, 596
BpuMI	CCSGG	1 cut(s)	827
BsaJI	CCNNGG	1 cut(s)	544
BsaWI	WCCGGW	1 cut(s)	805
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 300
Bse1I	ACTGG	2 cut(s)	574, 910
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	3 cut(s)	170, 219, 556
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	5 cut(s)	154, 432, 749, 776, 852
BseLI	CCNNNNNNNGG	2 cut(s)	283, 300
BseMI	GCAATG	3 cut(s)	170, 219, 556
BseMII	CTCAG	3 cut(s)	197, 401, 612
BseNI	ACTGG	2 cut(s)	574, 910
BseRI	GAGGAG	2 cut(s)	50, 328
BsgI	GTGCAG	2 cut(s)	329, 364
BshFI	GGCC	1 cut(s)	837
BsiHKAI	GWGCWC	3 cut(s)	133, 369, 612
BsiSI	CCGG	2 cut(s)	806, 826
BslFI	GGGAC	2 cut(s)	665, 842
BslI	CCNNNNNNNGG	2 cut(s)	283, 300
BsmFI	GGGAC	2 cut(s)	665, 842
BsnI	GGCC	1 cut(s)	837
Bsp119I	TTCGAA	1 cut(s)	9
Bsp1286I	GDGCHC	3 cut(s)	133, 369, 612
Bsp143I	GATC	3 cut(s)	55, 389, 668
BspACI	CCGC	1 cut(s)	886
BspANI	GGCC	1 cut(s)	837
BspCNI	CTCAG	3 cut(s)	196, 402, 611
BspLI	GGNNCC	1 cut(s)	681
BspPI	GGATC	2 cut(s)	384, 676
BspQI	GCTCTTC	3 cut(s)	138, 249, 433
BspT104I	TTCGAA	1 cut(s)	9
BsrDI	GCAATG	3 cut(s)	170, 219, 556
BsrI	ACTGG	2 cut(s)	574, 910
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	3 cut(s)	55, 389, 668
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	2 cut(s)	757, 899
Bst6I	CTCTTC	6 cut(s)	60, 138, 219, 249, 369, 433
BstBI	TTCGAA	1 cut(s)	9
BstDEI	CTNAG	4 cut(s)	183, 410, 524, 598
BstF5I	GGATG	5 cut(s)	154, 432, 749, 776, 852
BstH2I	RGCGCY	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	821
BstKTI	GATC	3 cut(s)	58, 392, 671
BstMBI	GATC	3 cut(s)	55, 389, 668
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 624
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	2 cut(s)	543, 825
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	837
BtsCI	GGATG	5 cut(s)	154, 432, 749, 776, 852
BtsIMutI	CAGTG	3 cut(s)	369, 407, 762
CfoI	GCGC	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	140, 679, 836
Csp6I	GTAC	2 cut(s)	274, 841
CviAII	CATG	4 cut(s)	137, 159, 703, 721
CviJI	RGCY	8 cut(s)	238, 259, 443, 523, 688, 837, 870, 885
CviKI_1	RGCY	8 cut(s)	238, 259, 443, 523, 688, 837, 870, 885
CviQI	GTAC	2 cut(s)	274, 841
DdeI	CTNAG	4 cut(s)	183, 410, 524, 598
DpnI	GATC	3 cut(s)	57, 391, 670
DpnII	GATC	3 cut(s)	55, 389, 668
Eam1104I	CTCTTC	6 cut(s)	60, 138, 219, 249, 369, 433
EarI	CTCTTC	6 cut(s)	60, 138, 219, 249, 369, 433
Eco47I	GGWCC	2 cut(s)	140, 679
Eco81I	CCTNAGG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	543
FaeI	CATG	4 cut(s)	140, 162, 706, 724
FaqI	GGGAC	2 cut(s)	665, 842
FatI	CATG	4 cut(s)	136, 158, 702, 720
Fnu4HI	GCNGC	1 cut(s)	886
FokI	GGATG	5 cut(s)	141, 439, 736, 763, 839
Fsp4HI	GCNGC	1 cut(s)	886
GlaI	GCGC	1 cut(s)	820
GluI	GCNGC	1 cut(s)	886
HaeII	RGCGCY	1 cut(s)	822
HaeIII	GGCC	1 cut(s)	837
HapII	CCGG	2 cut(s)	806, 826
HhaI	GCGC	1 cut(s)	821
Hin1II	CATG	4 cut(s)	140, 162, 706, 724
Hin6I	GCGC	1 cut(s)	819
HinP1I	GCGC	1 cut(s)	819
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	2 cut(s)	331, 452
HpaII	CCGG	2 cut(s)	806, 826
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	8 cut(s)	21, 88, 205, 463, 493, 582, 601, 895
Hpy188III	TCNNGA	2 cut(s)	59, 635
Hpy8I	GTNNAC	1 cut(s)	787
HpyCH4III	ACNGT	2 cut(s)	757, 899
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	8 cut(s)	25, 124, 310, 345, 458, 702, 744, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 624
HpyF3I	CTNAG	4 cut(s)	183, 410, 524, 598
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	4 cut(s)	140, 162, 706, 724
HspAI	GCGC	1 cut(s)	819
Kzo9I	GATC	3 cut(s)	55, 389, 668
LguI	GCTCTTC	3 cut(s)	138, 249, 433
LweI	GCATC	2 cut(s)	12, 467
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	3 cut(s)	57, 391, 670
MboI	GATC	3 cut(s)	55, 389, 668
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	3 cut(s)	133, 369, 612
MluCI	AATT	7 cut(s)	5, 77, 263, 478, 501, 909, 917
MroXI	GAANNNNTTC	1 cut(s)	15
MseI	TTAA	2 cut(s)	561, 940
MslI	CAYNNNNRTG	1 cut(s)	157
MspI	CCGG	2 cut(s)	806, 826
MspR9I	CCNGG	2 cut(s)	545, 827
MvaI	CCWGG	1 cut(s)	545
MwoI	GCNNNNNNNGC	2 cut(s)	316, 624
NciI	CCSGG	1 cut(s)	827
NdeII	GATC	3 cut(s)	55, 389, 668
NlaIII	CATG	4 cut(s)	140, 162, 706, 724
NlaIV	GGNNCC	1 cut(s)	681
NmuCI	GTSAC	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	9
PciSI	GCTCTTC	3 cut(s)	138, 249, 433
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	331, 452
PflMI	CCANNNNNTGG	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	825
PkrI	GCNGC	1 cut(s)	887
PshBI	ATTAAT	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	3 cut(s)	140, 679, 836
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	2 cut(s)	275, 842
RsaNI	GTAC	2 cut(s)	274, 841
RseI	CAYNNNNRTG	1 cut(s)	157
SapI	GCTCTTC	3 cut(s)	138, 249, 433
SaqAI	TTAA	2 cut(s)	561, 940
SatI	GCNGC	1 cut(s)	886
Sau3AI	GATC	3 cut(s)	55, 389, 668
Sau96I	GGNCC	3 cut(s)	140, 679, 836
ScrFI	CCNGG	2 cut(s)	545, 827
SduI	GDGCHC	3 cut(s)	133, 369, 612
SfaNI	GCATC	2 cut(s)	12, 467
SfuI	TTCGAA	1 cut(s)	9
SinI	GGWCC	2 cut(s)	140, 679
SmiMI	CAYNNNNRTG	1 cut(s)	157
SmlI	CTYRAG	2 cut(s)	59, 611
SmoI	CTYRAG	2 cut(s)	59, 611
Sse9I	AATT	7 cut(s)	5, 77, 263, 478, 501, 909, 917
SsiI	CCGC	1 cut(s)	886
StyD4I	CCNGG	2 cut(s)	543, 825
TaaI	ACNGT	2 cut(s)	757, 899
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	1 cut(s)	9
TasI	AATT	7 cut(s)	5, 77, 263, 478, 501, 909, 917
TauI	GCSGC	1 cut(s)	888
TfiI	GAWTC	2 cut(s)	331, 452
Tru1I	TTAA	2 cut(s)	561, 940
Tru9I	TTAA	2 cut(s)	561, 940
TscAI	CASTG	3 cut(s)	369, 414, 762
TseFI	GTSAC	1 cut(s)	150
Tsp45I	GTSAC	1 cut(s)	150
TspRI	CASTG	3 cut(s)	369, 414, 762
Van91I	CCANNNNNTGG	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	140, 679
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	2 cut(s)	5, 478
XmnI	GAANNNNTTC	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.