Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Reverse (-)

17892738 .. 17894162

Gene Structure 1425 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGCAATTCTGGAGTCCAAGTAGTATCAACAAGAACAAAGCTATGGTTGAGAATCTGCAAAATCATGGTATAGTTACTTCAGATGAAGTTGCTAAAGCTATGGAGGCTGTGGATAGAGGCGTATTTGTAACAGATCGTTCCTCTGCTTATGTTGATAGTCCCATGTCTATTGGTTATAATGTGACTATATCAGCTCCTCATATGCATGCAATGTGTCTTCAACTTCTTGAAAAACATTTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGGGACCGGGTACTTAACTGCTTGCTTTGCGGTTATGGTTGGAACCGAAGGGCGTGCTATTGGTGTGGAACATATTCCTGAATTGGTGGCTTCTTCTGTTAAGAATATTGAAGCGAGTGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTGATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAGCCCGGTGGGAGACTGGTGATTCCGGTTGGGAACATATTCCAAGATCTGCAAGTGGTGGATAAGAACTCAGATGGTTCTGTTAGCATCAAGGATGAAACTTCAGTTCGTTATGTTCCTTTGACTAGCCGTGAAGCCCAGCTGAGAGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004719 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006479 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008213 GO:0008276 GO:0008757 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009845 GO:0009987 GO:0010033 GO:0010340 GO:0016740 GO:0016741 GO:0019538 GO:0030091 GO:0032259 GO:0032501 GO:0032502 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048856 GO:0050896 GO:0051998 GO:0071704 GO:0090351 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

230

Amino Acids

24.61

Weight (kDa)

5.49

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	1 - 209	1.5e-90	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	67 - 116	1.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	66, 624
AfaI	GTAC	2 cut(s)	261, 287
AgsI	TTSAA	5 cut(s)	224, 233, 244, 386, 538
AjiI	CACGTC	1 cut(s)	490
AluBI	AGCT	4 cut(s)	44, 101, 197, 679
AluI	AGCT	4 cut(s)	44, 101, 197, 679
Alw26I	GTCTC	2 cut(s)	426, 544
AlwI	GGATC	1 cut(s)	505
Ama87I	CYCGRG	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	395, 497, 500
Asp700I	GAANNNNTTC	3 cut(s)	8, 348, 575
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	3 cut(s)	249, 283, 543
AsuHPI	GGTGA	2 cut(s)	452, 568
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	279
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	382, 509, 512
BccI	CCATC	3 cut(s)	437, 450, 605
BceAI	ACGGC	1 cut(s)	651
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	3 cut(s)	249, 283, 543
BcoDI	GTCTC	2 cut(s)	426, 544
BfaI	CTAG	1 cut(s)	663
BglII	AGATCT	1 cut(s)	583
BisI	GCNGC	3 cut(s)	396, 498, 501
BlsI	GCNGC	3 cut(s)	397, 499, 502
Bme1390I	CCNGG	3 cut(s)	249, 283, 543
Bme18I	GGWCC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	280, 319
BmrFI	CCNGG	3 cut(s)	249, 283, 543
BmsI	GCATC	2 cut(s)	469, 633
BpiI	GAAGAC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	3 cut(s)	249, 283, 543
BsaI	GGTCTC	1 cut(s)	426
BsaWI	WCCGGW	2 cut(s)	505, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bse1I	ACTGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	461, 637
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	3 cut(s)	453, 621, 671
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	382, 509, 512
BseYI	CCCAGC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	5 cut(s)	248, 282, 506, 543, 563
BslFI	GGGAC	2 cut(s)	147, 292
BsmAI	GTCTC	2 cut(s)	426, 544
BsmFI	GGGAC	2 cut(s)	147, 292
BsmI	GAATGC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	426
BsoBI	CYCGRG	1 cut(s)	274
Bsp143I	GATC	4 cut(s)	136, 510, 529, 583
BspACI	CCGC	1 cut(s)	305
BspCNI	CTCAG	3 cut(s)	454, 620, 672
BspLI	GGNNCC	2 cut(s)	280, 319
BspPI	GGATC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	558
BssMI	GATC	4 cut(s)	136, 510, 529, 583
BstC8I	GCNNGC	3 cut(s)	210, 298, 330
BstDEI	CTNAG	3 cut(s)	462, 607, 680
BstF5I	GGATG	2 cut(s)	461, 637
BstKTI	GATC	4 cut(s)	139, 513, 532, 586
BstMAI	GTCTC	2 cut(s)	426, 544
BstMBI	GATC	4 cut(s)	136, 510, 529, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 302, 395, 467
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	247, 281, 541
BstV1I	GCAGC	3 cut(s)	382, 509, 512
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	510, 583
BstYI	RGATCY	2 cut(s)	510, 583
BtrI	CACGTC	1 cut(s)	490
BtsCI	GGATG	2 cut(s)	461, 637
Cac8I	GCNNGC	3 cut(s)	210, 298, 330
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	260, 286
CviAII	CATG	4 cut(s)	68, 166, 209, 434
CviQI	GTAC	2 cut(s)	260, 286
DdeI	CTNAG	3 cut(s)	462, 607, 680
DpnI	GATC	4 cut(s)	138, 512, 531, 585
DpnII	GATC	4 cut(s)	136, 510, 529, 583
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	2 cut(s)	66, 624
Eco88I	CYCGRG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	210
FaeI	CATG	4 cut(s)	71, 169, 212, 437
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	2 cut(s)	147, 292
FatI	CATG	4 cut(s)	67, 165, 208, 433
FauNDI	CATATG	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	3 cut(s)	396, 498, 501
FokI	GGATG	2 cut(s)	468, 644
Fsp4HI	GCNGC	3 cut(s)	396, 498, 501
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	3 cut(s)	396, 498, 501
GsaI	CCCAGC	1 cut(s)	679
GsuI	CTGGAG	1 cut(s)	34
HapII	CCGG	5 cut(s)	248, 282, 506, 543, 563
Hin1II	CATG	4 cut(s)	71, 169, 212, 437
HinfI	GANTC	3 cut(s)	16, 55, 559
HpaII	CCGG	5 cut(s)	248, 282, 506, 543, 563
HphI	GGTGA	2 cut(s)	452, 568
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	85, 411, 494, 610
Hpy188III	TCNNGA	3 cut(s)	13, 230, 353
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	494
HpyAV	CCTTC	2 cut(s)	317, 410
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	4 cut(s)	61, 208, 212, 589
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 302, 395, 467
HpyF3I	CTNAG	3 cut(s)	462, 607, 680
HpySE526I	ACGT	1 cut(s)	489
Hsp92II	CATG	4 cut(s)	71, 169, 212, 437
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	4 cut(s)	136, 510, 529, 583
LmnI	GCTCC	3 cut(s)	202, 475, 494
LpnPI	CCDG	9 cut(s)	261, 295, 366, 519, 528, 539, 556, 576, 689
Lsp1109I	GCAGC	3 cut(s)	382, 509, 512
LweI	GCATC	2 cut(s)	469, 633
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	3 cut(s)	76, 130, 184
MalI	GATC	4 cut(s)	138, 512, 531, 585
MboI	GATC	4 cut(s)	136, 510, 529, 583
MboII	GAAGA	2 cut(s)	212, 360
MflI	RGATCY	2 cut(s)	510, 583
MluCI	AATT	2 cut(s)	8, 356
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	295, 472
MnlI	CCTC	7 cut(s)	100, 113, 154, 210, 441, 511, 677
Mph1103I	ATGCAT	1 cut(s)	210
MroXI	GAANNNNTTC	3 cut(s)	8, 348, 575
MseI	TTAA	2 cut(s)	290, 375
MslI	CAYNNNNRTG	2 cut(s)	207, 438
MspA1I	CMGCKG	1 cut(s)	679
MspI	CCGG	5 cut(s)	248, 282, 506, 543, 563
MspR9I	CCNGG	3 cut(s)	249, 283, 543
Mva1269I	GAATGC	1 cut(s)	258
MwoI	GCNNNNNNNGC	4 cut(s)	107, 302, 395, 467
NciI	CCSGG	3 cut(s)	249, 283, 543
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	4 cut(s)	136, 510, 529, 583
NlaIII	CATG	4 cut(s)	71, 169, 212, 437
NlaIV	GGNNCC	2 cut(s)	280, 319
NmuCI	GTSAC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	210
NspI	RCATGY	1 cut(s)	212
PaeI	GCATGC	1 cut(s)	212
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	3 cut(s)	8, 348, 575
PfeI	GAWTC	2 cut(s)	55, 559
PkrI	GCNGC	3 cut(s)	397, 499, 502
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	675
PspN4I	GGNNCC	2 cut(s)	280, 319
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	2 cut(s)	510, 583
PvuII	CAGCTG	1 cut(s)	679
RsaI	GTAC	2 cut(s)	261, 287
RsaNI	GTAC	2 cut(s)	260, 286
RseI	CAYNNNNRTG	2 cut(s)	207, 438
SaqAI	TTAA	2 cut(s)	290, 375
SatI	GCNGC	3 cut(s)	396, 498, 501
Sau3AI	GATC	4 cut(s)	136, 510, 529, 583
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	249, 283, 543
SetI	ASST	5 cut(s)	46, 103, 199, 492, 681
SfaNI	GCATC	2 cut(s)	469, 633
SinI	GGWCC	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	207, 438
SphI	GCATGC	1 cut(s)	212
Sse9I	AATT	2 cut(s)	8, 356
SsiI	CCGC	1 cut(s)	305
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	3 cut(s)	247, 281, 541
TaiI	ACGT	1 cut(s)	492
TasI	AATT	2 cut(s)	8, 356
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	55, 559
Tru1I	TTAA	2 cut(s)	290, 375
Tru9I	TTAA	2 cut(s)	290, 375
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	3 cut(s)	395, 497, 500
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	4 cut(s)	17, 102, 422, 648
TspGWI	ACGGA	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	279
XceI	RCATGY	1 cut(s)	212
XmnI	GAANNNNTTC	3 cut(s)	8, 348, 575
XspI	CTAG	1 cut(s)	663
Zsp2I	ATGCAT	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.