Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

9724853 .. 9726758

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTATAATCATCTATTATCGCCATCACCGAGAGCCATCGCTATAGCCCGCATAGCATACGGTTGCGTATGTACTACGCCCTCTACAACAACCCACCTCTTAACCTTCGCCCCTACTCGCTCTTTCTCTCACCTTCACCGTCTCCGCCGCACAGTCTCACTCCTCCGACCACCCACTCTCTCCTCCTGTCCTAATTTCCTCACGGGTAACTCTCACTTCTGCGGAATGGCGTGGCTCTTGTCCGGGCGTGGAATTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGAGCCCAGCTTATGTTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTATAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAACTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCCGAAATACCGCAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAATCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTTTAAGTATCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGCTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

305

Amino Acids

32.77

Weight (kDa)

8.88

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	88 - 299	2.3e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	157 - 224	4.6e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccIII	TCCGGA	1 cut(s)	577
AciI	CCGC	5 cut(s)	49, 145, 148, 222, 740
AclWI	GGATC	1 cut(s)	505
AcsI	RAATTY	3 cut(s)	252, 463, 689
AcuI	CTGAAG	2 cut(s)	342, 849
AfaI	GTAC	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	611, 763
AjnI	CCWGG	3 cut(s)	472, 766, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	664, 696
AluBI	AGCT	4 cut(s)	374, 725, 899, 904
AluI	AGCT	4 cut(s)	374, 725, 899, 904
Alw26I	GTCTC	3 cut(s)	146, 160, 592
AlwI	GGATC	1 cut(s)	505
Aor13HI	TCCGGA	1 cut(s)	577
AoxI	GGCC	2 cut(s)	542, 683
ApeKI	GCWGC	4 cut(s)	469, 722, 725, 904
ApoI	RAATTY	3 cut(s)	252, 463, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	496, 528
Asp700I	GAANNNNTTC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	542
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	5 cut(s)	18, 122, 128, 677, 793
BanII	GRGCYC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	481, 712, 734, 891
BccI	CCATC	7 cut(s)	31, 44, 322, 356, 529, 662, 830
BceAI	ACGGC	1 cut(s)	534
BciT130I	CCWGG	3 cut(s)	474, 768, 806
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	3 cut(s)	146, 160, 592
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	2 cut(s)	42, 618
BisI	GCNGC	5 cut(s)	148, 470, 723, 726, 905
BlpI	GCTNAGC	1 cut(s)	900
BlsI	GCNGC	5 cut(s)	149, 471, 724, 727, 906
Bme1390I	CCNGG	4 cut(s)	244, 474, 768, 806
BmgT120I	GGNCC	1 cut(s)	542
BmiI	GGNNCC	2 cut(s)	368, 646
BmrFI	CCNGG	4 cut(s)	244, 474, 768, 806
BmsI	GCATC	1 cut(s)	694
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	900
BpuMI	CCSGG	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	577
Bse3DI	GCAATG	1 cut(s)	276
BseAI	TCCGGA	1 cut(s)	577
BseBI	CCWGG	3 cut(s)	474, 768, 806
BseGI	GGATG	2 cut(s)	496, 841
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	2 cut(s)	666, 914
BseRI	GAGGAG	2 cut(s)	152, 172
BseXI	GCAGC	4 cut(s)	481, 712, 734, 891
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	2 cut(s)	544, 685
BsiSI	CCGG	2 cut(s)	243, 578
BslFI	GGGAC	2 cut(s)	346, 517
BsmAI	GTCTC	3 cut(s)	146, 160, 592
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	346, 517
BsnI	GGCC	2 cut(s)	544, 685
Bso31I	GGTCTC	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	577
Bsp143I	GATC	1 cut(s)	497
Bsp1720I	GCTNAGC	1 cut(s)	900
BspACI	CCGC	5 cut(s)	49, 145, 148, 222, 740
BspANI	GGCC	2 cut(s)	544, 685
BspCNI	CTCAG	2 cut(s)	665, 913
BspEI	TCCGGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	368, 646
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	1 cut(s)	505
BspTNI	GGTCTC	1 cut(s)	592
BsrDI	GCAATG	1 cut(s)	276
BssMI	GATC	1 cut(s)	497
Bst2UI	CCWGG	3 cut(s)	474, 768, 806
Bst4CI	ACNGT	3 cut(s)	62, 140, 154
Bst6I	CTCTTC	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	49, 435, 446, 483
BstDEI	CTNAG	2 cut(s)	652, 900
BstF5I	GGATG	2 cut(s)	496, 841
BstKTI	GATC	1 cut(s)	500
BstMAI	GTCTC	3 cut(s)	146, 160, 592
BstMBI	GATC	1 cut(s)	497
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 478, 527, 682
BstNI	CCWGG	3 cut(s)	474, 768, 806
BstNSI	RCATGY	5 cut(s)	437, 444, 485, 525, 662
BstSCI	CCNGG	4 cut(s)	242, 472, 766, 804
BstSFI	CTRYAG	2 cut(s)	42, 618
BstV1I	GCAGC	4 cut(s)	481, 712, 734, 891
BsuRI	GGCC	2 cut(s)	544, 685
BtgZI	GCGATG	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	496, 841
BtsI	GCAGTG	1 cut(s)	564
BtsIMutI	CAGTG	2 cut(s)	564, 660
Cac8I	GCNNGC	4 cut(s)	49, 435, 446, 483
Cfr13I	GGNCC	1 cut(s)	542
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	8 cut(s)	391, 434, 441, 482, 522, 659, 713, 832
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	652, 900
DpnI	GATC	1 cut(s)	499
DpnII	GATC	1 cut(s)	497
DraI	TTTAAA	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	595
EciI	GGCGGA	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	592
Eco57I	CTGAAG	2 cut(s)	342, 849
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	3 cut(s)	472, 766, 804
EcoT22I	ATGCAT	2 cut(s)	435, 483
EcoT38I	GRGCYC	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	8 cut(s)	394, 437, 444, 485, 525, 662, 716, 835
FaqI	GGGAC	2 cut(s)	346, 517
FatI	CATG	8 cut(s)	390, 433, 440, 481, 521, 658, 712, 831
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	429
Fnu4HI	GCNGC	5 cut(s)	148, 470, 723, 726, 905
FokI	GGATG	2 cut(s)	503, 848
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	5 cut(s)	148, 470, 723, 726, 905
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	5 cut(s)	148, 470, 723, 726, 905
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	544, 685
HapII	CCGG	2 cut(s)	243, 578
Hin1II	CATG	8 cut(s)	394, 437, 444, 485, 525, 662, 716, 835
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	383, 784
HpaII	CCGG	2 cut(s)	243, 578
HphI	GGTGA	5 cut(s)	18, 122, 128, 677, 793
Hpy166II	GTNNAC	2 cut(s)	382, 823
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	5 cut(s)	257, 578, 731, 853, 893
Hpy8I	GTNNAC	2 cut(s)	382, 823
HpyAV	CCTTC	5 cut(s)	115, 143, 307, 635, 666
HpyCH4III	ACNGT	3 cut(s)	62, 140, 154
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 478, 527, 682
HpyF3I	CTNAG	2 cut(s)	652, 900
Hsp92II	CATG	8 cut(s)	394, 437, 444, 485, 525, 662, 716, 835
Kpn2I	TCCGGA	1 cut(s)	577
Kzo9I	GATC	1 cut(s)	497
LmnI	GCTCC	2 cut(s)	366, 733
Lsp1109I	GCAGC	4 cut(s)	481, 712, 734, 891
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	1 cut(s)	677
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	1 cut(s)	499
MboI	GATC	1 cut(s)	497
MboII	GAAGA	2 cut(s)	582, 786
MfeI	CAATTG	3 cut(s)	449, 597, 758
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	7 cut(s)	193, 252, 449, 463, 597, 689, 758
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	3 cut(s)	190, 435, 475
Mph1103I	ATGCAT	2 cut(s)	435, 483
MroI	TCCGGA	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	3 cut(s)	101, 812, 845
MslI	CAYNNNNRTG	2 cut(s)	432, 663
MspA1I	CMGCKG	2 cut(s)	725, 904
MspI	CCGG	2 cut(s)	243, 578
MspR9I	CCNGG	4 cut(s)	244, 474, 768, 806
MunI	CAATTG	3 cut(s)	449, 597, 758
MvaI	CCWGG	3 cut(s)	474, 768, 806
MwoI	GCNNNNNNNGC	4 cut(s)	53, 478, 527, 682
NciI	CCSGG	1 cut(s)	244
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	1 cut(s)	497
NlaIII	CATG	8 cut(s)	394, 437, 444, 485, 525, 662, 716, 835
NlaIV	GGNNCC	2 cut(s)	368, 646
NsiI	ATGCAT	2 cut(s)	435, 483
NspI	RCATGY	5 cut(s)	437, 444, 485, 525, 662
PaeI	GCATGC	2 cut(s)	437, 485
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	784
PkrI	GCNGC	5 cut(s)	149, 471, 724, 727, 906
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	472, 766, 804
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	3 cut(s)	472, 766, 804
PspN4I	GGNNCC	2 cut(s)	368, 646
PspPI	GGNCC	1 cut(s)	542
PstI	CTGCAG	1 cut(s)	622
PvuII	CAGCTG	2 cut(s)	725, 904
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	2 cut(s)	432, 663
SaqAI	TTAA	3 cut(s)	101, 812, 845
SatI	GCNGC	5 cut(s)	148, 470, 723, 726, 905
Sau3AI	GATC	1 cut(s)	497
Sau96I	GGNCC	1 cut(s)	542
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	4 cut(s)	244, 474, 768, 806
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	2 cut(s)	42, 618
SmiMI	CAYNNNNRTG	2 cut(s)	432, 663
SphI	GCATGC	2 cut(s)	437, 485
Sse9I	AATT	7 cut(s)	193, 252, 449, 463, 597, 689, 758
SsiI	CCGC	5 cut(s)	49, 145, 148, 222, 740
SspI	AATATT	1 cut(s)	607
SspMI	CTAG	1 cut(s)	677
StyD4I	CCNGG	4 cut(s)	242, 472, 766, 804
TaaI	ACNGT	3 cut(s)	62, 140, 154
TaqI	TCGA	3 cut(s)	395, 553, 892
TasI	AATT	7 cut(s)	193, 252, 449, 463, 597, 689, 758
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	1 cut(s)	784
Tru1I	TTAA	3 cut(s)	101, 812, 845
Tru9I	TTAA	3 cut(s)	101, 812, 845
TscAI	CASTG	2 cut(s)	564, 660
TseI	GCWGC	4 cut(s)	469, 722, 725, 904
TspDTI	ATGAA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	564, 660
XapI	RAATTY	3 cut(s)	252, 463, 689
XceI	RCATGY	5 cut(s)	437, 444, 485, 525, 662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	677
Zsp2I	ATGCAT	2 cut(s)	435, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.