Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

10621859 .. 10624770

Gene Structure 2912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGAGCCCAGCTTATGTTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTATAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAACTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCCGAAATACCGCAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAATCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTTTAAGTATCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGCTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

215

Amino Acids

22.88

Weight (kDa)

5.84

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	1 - 209	7.5e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	67 - 139	2.1e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	193, 419
AcuI	CTGAAG	2 cut(s)	72, 579
AgsI	TTSAA	2 cut(s)	341, 493
AjnI	CCWGG	3 cut(s)	202, 496, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	4 cut(s)	104, 455, 629, 634
AluI	AGCT	4 cut(s)	104, 455, 629, 634
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	272, 413
ApeKI	GCWGC	4 cut(s)	199, 452, 455, 634
ApoI	RAATTY	2 cut(s)	193, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	407, 523
BanII	GRGCYC	1 cut(s)	101
BbvI	GCAGC	4 cut(s)	211, 442, 464, 621
BccI	CCATC	5 cut(s)	52, 86, 259, 392, 560
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	3 cut(s)	204, 498, 536
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	4 cut(s)	200, 453, 456, 635
BlpI	GCTNAGC	1 cut(s)	630
BlsI	GCNGC	4 cut(s)	201, 454, 457, 636
Bme1390I	CCNGG	3 cut(s)	204, 498, 536
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	2 cut(s)	98, 376
BmrFI	CCNGG	3 cut(s)	204, 498, 536
BmsI	GCATC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	307
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	204, 498, 536
BseGI	GGATG	2 cut(s)	226, 571
BseMII	CTCAG	2 cut(s)	396, 644
BseXI	GCAGC	4 cut(s)	211, 442, 464, 621
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	274, 415
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	76, 247
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	76, 247
BsnI	GGCC	2 cut(s)	274, 415
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	227
Bsp1720I	GCTNAGC	1 cut(s)	630
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	2 cut(s)	274, 415
BspCNI	CTCAG	2 cut(s)	395, 643
BspEI	TCCGGA	1 cut(s)	307
BspLI	GGNNCC	2 cut(s)	98, 376
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	322
BssMI	GATC	1 cut(s)	227
Bst2UI	CCWGG	3 cut(s)	204, 498, 536
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	165, 176, 213
BstDEI	CTNAG	2 cut(s)	382, 630
BstF5I	GGATG	2 cut(s)	226, 571
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
BstNI	CCWGG	3 cut(s)	204, 498, 536
BstNSI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
BstSCI	CCNGG	3 cut(s)	202, 496, 534
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	4 cut(s)	211, 442, 464, 621
BsuRI	GGCC	2 cut(s)	274, 415
BtsCI	GGATG	2 cut(s)	226, 571
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 390
Cac8I	GCNNGC	3 cut(s)	165, 176, 213
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	8 cut(s)	121, 164, 171, 212, 252, 389, 443, 562
DdeI	CTNAG	2 cut(s)	382, 630
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	101
Eco31I	GGTCTC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	72, 579
EcoRII	CCWGG	3 cut(s)	202, 496, 534
EcoT22I	ATGCAT	2 cut(s)	165, 213
EcoT38I	GRGCYC	1 cut(s)	101
FaeI	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
FaqI	GGGAC	2 cut(s)	76, 247
FatI	CATG	8 cut(s)	120, 163, 170, 211, 251, 388, 442, 561
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	200, 453, 456, 635
FokI	GGATG	2 cut(s)	233, 578
FriOI	GRGCYC	1 cut(s)	101
Fsp4HI	GCNGC	4 cut(s)	200, 453, 456, 635
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	4 cut(s)	200, 453, 456, 635
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	2 cut(s)	274, 415
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	113, 514
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	2 cut(s)	407, 523
Hpy166II	GTNNAC	2 cut(s)	112, 553
Hpy188III	TCNNGA	4 cut(s)	308, 461, 583, 623
Hpy8I	GTNNAC	2 cut(s)	112, 553
HpyAV	CCTTC	3 cut(s)	37, 365, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
HpyF3I	CTNAG	2 cut(s)	382, 630
Hsp92II	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	2 cut(s)	96, 463
Lsp1109I	GCAGC	4 cut(s)	211, 442, 464, 621
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	407
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	2 cut(s)	312, 516
MfeI	CAATTG	3 cut(s)	179, 327, 488
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	5 cut(s)	179, 193, 327, 419, 488
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	165, 205
MnlI	CCTC	4 cut(s)	334, 389, 494, 632
Mph1103I	ATGCAT	2 cut(s)	165, 213
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	2 cut(s)	542, 575
MslI	CAYNNNNRTG	2 cut(s)	162, 393
MspA1I	CMGCKG	2 cut(s)	455, 634
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	204, 498, 536
MunI	CAATTG	3 cut(s)	179, 327, 488
MvaI	CCWGG	3 cut(s)	204, 498, 536
MwoI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
NlaIV	GGNNCC	2 cut(s)	98, 376
NsiI	ATGCAT	2 cut(s)	165, 213
NspI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
PaeI	GCATGC	2 cut(s)	167, 215
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	4 cut(s)	201, 454, 457, 636
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	135
Psp6I	CCWGG	3 cut(s)	202, 496, 534
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	3 cut(s)	202, 496, 534
PspN4I	GGNNCC	2 cut(s)	98, 376
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	352
PvuII	CAGCTG	2 cut(s)	455, 634
RseI	CAYNNNNRTG	2 cut(s)	162, 393
SaqAI	TTAA	2 cut(s)	542, 575
SatI	GCNGC	4 cut(s)	200, 453, 456, 635
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	204, 498, 536
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	162, 393
SphI	GCATGC	2 cut(s)	167, 215
Sse9I	AATT	5 cut(s)	179, 193, 327, 419, 488
SsiI	CCGC	1 cut(s)	470
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	202, 496, 534
TaqI	TCGA	3 cut(s)	125, 283, 622
TasI	AATT	5 cut(s)	179, 193, 327, 419, 488
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	2 cut(s)	542, 575
Tru9I	TTAA	2 cut(s)	542, 575
TscAI	CASTG	2 cut(s)	294, 390
TseI	GCWGC	4 cut(s)	199, 452, 455, 634
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	2 cut(s)	294, 390
XapI	RAATTY	2 cut(s)	193, 419
XceI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	2 cut(s)	165, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.