Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

9233540 .. 9235837

Gene Structure 2298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCGTATGCTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCTCATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGTCGGGATATTTGACTGCATGTTTTGCACTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTGTAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAAGTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCAGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCAGAAATACCACAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAACCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTGTAAGTGTCAGGACTGAAACTTCAGTTCGTTATGTTCCACTGACAAGTCGAGAAGCTCAGTTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

215

Amino Acids

22.82

Weight (kDa)

5.84

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	1 - 209	1.5e-83	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PrmA	PF06325	57 - 120	7.3e-06	Ribosomal protein L11 methyltransferase (PrmA)
Methyltransf_31	PF13847	67 - 119	1e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AccIII	TCCGGA	1 cut(s)	307
AclWI	GGATC	1 cut(s)	235
AcsI	RAATTY	2 cut(s)	193, 419
AcuI	CTGAAG	2 cut(s)	72, 579
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	2 cut(s)	341, 493
AjnI	CCWGG	3 cut(s)	202, 496, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	2 cut(s)	455, 629
AluI	AGCT	2 cut(s)	455, 629
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	1 cut(s)	235
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	272, 413
ApeKI	GCWGC	3 cut(s)	199, 452, 455
ApoI	RAATTY	2 cut(s)	193, 419
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	2 cut(s)	96, 272
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	211, 442, 464
BccI	CCATC	5 cut(s)	52, 86, 259, 392, 560
BciT130I	CCWGG	3 cut(s)	204, 498, 536
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	407
BisI	GCNGC	3 cut(s)	200, 453, 456
BlsI	GCNGC	3 cut(s)	201, 454, 457
Bme1390I	CCNGG	3 cut(s)	204, 498, 536
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	96, 272
BmiI	GGNNCC	3 cut(s)	97, 98, 376
BmrFI	CCNGG	3 cut(s)	204, 498, 536
BmsI	GCATC	1 cut(s)	424
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	2 cut(s)	444, 519
BsaI	GGTCTC	1 cut(s)	322
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	204, 498, 536
BseGI	GGATG	2 cut(s)	226, 571
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMII	CTCAG	2 cut(s)	396, 644
BseXI	GCAGC	3 cut(s)	211, 442, 464
BseYI	CCCAGC	1 cut(s)	100
BsgI	GTGCAG	2 cut(s)	135, 369
BshFI	GGCC	2 cut(s)	274, 415
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	76, 109
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	76, 109
BsnI	GGCC	2 cut(s)	274, 415
Bso31I	GGTCTC	1 cut(s)	322
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	274, 415
BspCNI	CTCAG	2 cut(s)	395, 643
BspEI	TCCGGA	1 cut(s)	307
BspLI	GGNNCC	3 cut(s)	97, 98, 376
BspPI	GGATC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	322
BssMI	GATC	1 cut(s)	227
Bst2UI	CCWGG	3 cut(s)	204, 498, 536
Bst6I	CTCTTC	1 cut(s)	325
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	3 cut(s)	165, 176, 213
BstDEI	CTNAG	2 cut(s)	382, 630
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	226, 571
BstKTI	GATC	1 cut(s)	230
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
BstNI	CCWGG	3 cut(s)	204, 498, 536
BstNSI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
BstSCI	CCNGG	3 cut(s)	202, 496, 534
BstV1I	GCAGC	3 cut(s)	211, 442, 464
BsuRI	GGCC	2 cut(s)	274, 415
BtsCI	GGATG	2 cut(s)	226, 571
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	5 cut(s)	260, 294, 390, 400, 611
Cac8I	GCNNGC	3 cut(s)	165, 176, 213
Cfr13I	GGNCC	2 cut(s)	96, 272
CviAII	CATG	8 cut(s)	121, 164, 171, 212, 252, 389, 443, 562
CviJI	RGCY	9 cut(s)	77, 202, 274, 406, 415, 455, 496, 629, 642
CviKI_1	RGCY	9 cut(s)	77, 202, 274, 406, 415, 455, 496, 629, 642
DdeI	CTNAG	2 cut(s)	382, 630
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	72, 579
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	96
EcoRII	CCWGG	3 cut(s)	202, 496, 534
EcoT22I	ATGCAT	2 cut(s)	165, 213
FaeI	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
FaqI	GGGAC	2 cut(s)	76, 109
FatI	CATG	8 cut(s)	120, 163, 170, 211, 251, 388, 442, 561
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	200, 453, 456
FokI	GGATG	2 cut(s)	233, 578
Fsp4HI	GCNGC	3 cut(s)	200, 453, 456
FspBI	CTAG	1 cut(s)	407
GluI	GCNGC	3 cut(s)	200, 453, 456
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	444, 519
HaeIII	GGCC	2 cut(s)	274, 415
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
HinfI	GANTC	2 cut(s)	113, 514
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188III	TCNNGA	5 cut(s)	237, 308, 461, 583, 623
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	37, 365, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
HpyF3I	CTNAG	2 cut(s)	382, 630
Hsp92II	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
KflI	GGGWCCC	1 cut(s)	96
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	3 cut(s)	211, 442, 464
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	407
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	2 cut(s)	312, 516
MfeI	CAATTG	3 cut(s)	179, 327, 488
MluCI	AATT	5 cut(s)	179, 193, 327, 419, 488
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	165, 205
MnlI	CCTC	5 cut(s)	165, 334, 389, 494, 632
Mph1103I	ATGCAT	2 cut(s)	165, 213
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	1 cut(s)	542
MslI	CAYNNNNRTG	2 cut(s)	162, 393
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	3 cut(s)	204, 498, 536
MunI	CAATTG	3 cut(s)	179, 327, 488
MvaI	CCWGG	3 cut(s)	204, 498, 536
MwoI	GCNNNNNNNGC	3 cut(s)	208, 257, 412
NdeI	CATATG	1 cut(s)	159
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	8 cut(s)	124, 167, 174, 215, 255, 392, 446, 565
NlaIV	GGNNCC	3 cut(s)	97, 98, 376
NsiI	ATGCAT	2 cut(s)	165, 213
NspI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
PaeI	GCATGC	2 cut(s)	167, 215
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	514
PkrI	GCNGC	3 cut(s)	201, 454, 457
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
PpuMI	RGGWCCY	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	202, 496, 534
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	3 cut(s)	202, 496, 534
PspN4I	GGNNCC	3 cut(s)	97, 98, 376
PspPI	GGNCC	2 cut(s)	96, 272
PspPPI	RGGWCCY	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	455
RseI	CAYNNNNRTG	2 cut(s)	162, 393
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	3 cut(s)	200, 453, 456
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	96, 272
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	3 cut(s)	204, 498, 536
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	162, 393
SphI	GCATGC	2 cut(s)	167, 215
Sse9I	AATT	5 cut(s)	179, 193, 327, 419, 488
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	3 cut(s)	202, 496, 534
TaqI	TCGA	3 cut(s)	125, 283, 622
TasI	AATT	5 cut(s)	179, 193, 327, 419, 488
TfiI	GAWTC	1 cut(s)	514
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	5 cut(s)	267, 294, 390, 400, 618
TseI	GCWGC	3 cut(s)	199, 452, 455
TspDTI	ATGAA	1 cut(s)	431
TspRI	CASTG	5 cut(s)	267, 294, 390, 400, 618
VpaK11BI	GGWCC	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	533
XapI	RAATTY	2 cut(s)	193, 419
XceI	RCATGY	5 cut(s)	167, 174, 215, 255, 392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	1 cut(s)	407
Zsp2I	ATGCAT	2 cut(s)	165, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.