Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Reverse (-)

3940402 .. 3942724

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTATAATCTATTATCGCCATCATCACCATGGAGAGCTAAAGCCATAGGCCGCTTAGCATATGGTTGCTTCTACACTACGCCCTCTACACCAAACCACCTCTTAACCTTCACCCCTACTCGCTTTTTCTCTCACCTTCTTCACCGCCGCCGCCGCACAGTCTCACTCCTCCGACCAACCACTCTCTCCTCTTGTCCTAGTTTCCTCACGGGTAACTCCCACTTCTGCGGAATGGCGTGGCTCTTGTCCGGGCGTGGAATTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAAGTTATGGAGTGATTAGTTCCGAGAAGGTTGCTGAAGTGATGGGGACTATCGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCTTATGATGACTCCCCCATGTCAATTGGTTATAATGCCACCATTTCTGCACCTCATATGCATGCAATGTGCCTGCAGTTGTTGGAAAAGAATTTGCAGCCTGATATGCATGCTTTGGATGTTGGATCAGGGACGGGTTATTTGACAGCATGTTTTGCATTGATGGTTGGACCAAAAGGTCGAGCAGTGGGTGTAGAACATATTCCGGAGTTGGTCTCTTCCTCAATTGAAAATATTCAAAAAAGTGCAGTAGCACCATTACTAAAAGAAGGTTCCCTCTCAGTGCATGTTGGTGATGGAAGGCTAGGTTGGCCGGAATTTGCACCTTATGATGCTATTCATGTCGGGGCAGCCGCTCCAGAAATACCACAACCACTTATTGACCAATTGAAGCCTGGAGGCAGAATGGTGATTCCTGTGGGAAACATATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTGTAAGTATCCGGACTGAAACTGCAGTTCGTTATGTTCCACTCACAAATCGAGATGCTCAGTTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

308

Amino Acids

33.35

Weight (kDa)

8.56

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	90 - 300	2.5e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	160 - 228	9.8e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AasI	GACNNNNNNGTC	1 cut(s)	555
AccBSI	CCGCTC	1 cut(s)	734
AccIII	TCCGGA	2 cut(s)	583, 858
AciI	CCGC	7 cut(s)	52, 145, 148, 151, 154, 228, 732
AclWI	GGATC	1 cut(s)	511
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	3 cut(s)	258, 469, 695
AcuI	CTGAAG	1 cut(s)	348
AgsI	TTSAA	3 cut(s)	608, 617, 769
AjnI	CCWGG	2 cut(s)	772, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	670, 702
AluBI	AGCT	2 cut(s)	38, 380
AluI	AGCT	2 cut(s)	38, 380
Alw26I	GTCTC	2 cut(s)	166, 598
AlwI	GGATC	1 cut(s)	511
Aor13HI	TCCGGA	2 cut(s)	583, 858
AoxI	GGCC	2 cut(s)	49, 689
ApeKI	GCWGC	2 cut(s)	475, 728
ApoI	RAATTY	3 cut(s)	258, 469, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	502, 534
Asp700I	GAANNNNTTC	2 cut(s)	579, 612
AspS9I	GGNCC	2 cut(s)	372, 548
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	6 cut(s)	18, 103, 125, 134, 683, 799
AvaII	GGWCC	2 cut(s)	372, 548
BbvI	GCAGC	2 cut(s)	487, 740
BccI	CCATC	6 cut(s)	28, 328, 362, 535, 668, 836
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	774, 812
BciVI	GTATCC	1 cut(s)	866
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	166, 598
BfaI	CTAG	2 cut(s)	198, 683
BfmI	CTRYAG	2 cut(s)	452, 870
BfuI	GTATCC	1 cut(s)	866
BisI	GCNGC	7 cut(s)	52, 148, 151, 154, 476, 729, 732
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	7 cut(s)	53, 149, 152, 155, 477, 730, 733
Bme1390I	CCNGG	3 cut(s)	250, 774, 812
Bme18I	GGWCC	2 cut(s)	372, 548
BmgT120I	GGNCC	2 cut(s)	372, 548
BmiI	GGNNCC	3 cut(s)	373, 374, 652
BmrFI	CCNGG	3 cut(s)	250, 774, 812
BmsI	GCATC	2 cut(s)	700, 892
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
BpmI	CTGGAG	2 cut(s)	720, 795
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	250
Bsa29I	ATCGAT	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	2 cut(s)	583, 858
Bse3DI	GCAATG	2 cut(s)	282, 450
BseAI	TCCGGA	2 cut(s)	583, 858
BseBI	CCWGG	2 cut(s)	774, 812
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	502, 847
BseMI	GCAATG	2 cut(s)	282, 450
BseMII	CTCAG	2 cut(s)	672, 920
BseRI	GAGGAG	2 cut(s)	158, 178
BseXI	GCAGC	2 cut(s)	487, 740
BseYI	CCCAGC	1 cut(s)	376
BsgI	GTGCAG	2 cut(s)	411, 645
BshFI	GGCC	2 cut(s)	51, 691
BshVI	ATCGAT	1 cut(s)	345
BsiSI	CCGG	4 cut(s)	249, 584, 692, 859
BslFI	GGGAC	3 cut(s)	352, 385, 523
BsmAI	GTCTC	2 cut(s)	166, 598
BsmFI	GGGAC	3 cut(s)	352, 385, 523
BsnI	GGCC	2 cut(s)	51, 691
Bso31I	GGTCTC	1 cut(s)	598
Bsp13I	TCCGGA	2 cut(s)	583, 858
Bsp143I	GATC	1 cut(s)	503
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	7 cut(s)	52, 145, 148, 151, 154, 228, 732
BspANI	GGCC	2 cut(s)	51, 691
BspCNI	CTCAG	2 cut(s)	671, 919
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	2 cut(s)	583, 858
BspLI	GGNNCC	3 cut(s)	373, 374, 652
BspMAI	CTGCAG	2 cut(s)	456, 874
BspPI	GGATC	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	282, 450
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	2 cut(s)	774, 812
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	601
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	441, 452, 489
BstDEI	CTNAG	3 cut(s)	55, 658, 906
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	502, 847
BstKTI	GATC	1 cut(s)	506
BstMAI	GTCTC	2 cut(s)	166, 598
BstMBI	GATC	1 cut(s)	503
BstMWI	GCNNNNNNNGC	4 cut(s)	153, 484, 533, 688
BstNI	CCWGG	2 cut(s)	774, 812
BstNSI	RCATGY	4 cut(s)	443, 491, 531, 668
BstSCI	CCNGG	3 cut(s)	248, 772, 810
BstSFI	CTRYAG	2 cut(s)	452, 870
BstV1I	GCAGC	2 cut(s)	487, 740
Bsu15I	ATCGAT	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	866
BsuRI	GGCC	2 cut(s)	51, 691
BsuTUI	ATCGAT	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	2 cut(s)	502, 847
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	570, 666
Cac8I	GCNNGC	3 cut(s)	441, 452, 489
Cfr13I	GGNCC	2 cut(s)	372, 548
ClaI	ATCGAT	1 cut(s)	345
CviAII	CATG	8 cut(s)	30, 397, 440, 488, 528, 665, 719, 838
DdeI	CTNAG	3 cut(s)	55, 658, 906
DpnI	GATC	1 cut(s)	505
DpnII	GATC	1 cut(s)	503
DraI	TTTAAA	1 cut(s)	819
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	372, 548
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	772, 810
EcoT14I	CCWWGG	1 cut(s)	29
EcoT22I	ATGCAT	2 cut(s)	441, 489
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	8 cut(s)	33, 400, 443, 491, 531, 668, 722, 841
FaqI	GGGAC	3 cut(s)	352, 385, 523
FatI	CATG	8 cut(s)	29, 396, 439, 487, 527, 664, 718, 837
FauNDI	CATATG	2 cut(s)	61, 435
Fnu4HI	GCNGC	7 cut(s)	52, 148, 151, 154, 476, 729, 732
FokI	GGATG	2 cut(s)	509, 854
Fsp4HI	GCNGC	7 cut(s)	52, 148, 151, 154, 476, 729, 732
FspBI	CTAG	2 cut(s)	198, 683
GluI	GCNGC	7 cut(s)	52, 148, 151, 154, 476, 729, 732
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	2 cut(s)	720, 795
HaeIII	GGCC	2 cut(s)	51, 691
HapII	CCGG	4 cut(s)	249, 584, 692, 859
Hin1II	CATG	8 cut(s)	33, 400, 443, 491, 531, 668, 722, 841
HinfI	GANTC	2 cut(s)	389, 790
HpaII	CCGG	4 cut(s)	249, 584, 692, 859
HphI	GGTGA	6 cut(s)	18, 103, 125, 134, 683, 799
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	2 cut(s)	173, 316
Hpy188III	TCNNGA	5 cut(s)	263, 584, 737, 859, 899
Hpy8I	GTNNAC	1 cut(s)	829
HpyAV	CCTTC	5 cut(s)	118, 146, 313, 641, 672
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	4 cut(s)	153, 484, 533, 688
HpyF3I	CTNAG	3 cut(s)	55, 658, 906
Hsp92II	CATG	8 cut(s)	33, 400, 443, 491, 531, 668, 722, 841
KflI	GGGWCCC	1 cut(s)	372
Kpn2I	TCCGGA	2 cut(s)	583, 858
Kzo9I	GATC	1 cut(s)	503
LmnI	GCTCC	1 cut(s)	739
Lsp1109I	GCAGC	2 cut(s)	487, 740
LweI	GCATC	2 cut(s)	700, 892
MaeI	CTAG	2 cut(s)	198, 683
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	505
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	1 cut(s)	503
MboII	GAAGA	2 cut(s)	131, 588
MfeI	CAATTG	3 cut(s)	402, 603, 764
MluCI	AATT	6 cut(s)	258, 402, 469, 603, 695, 764
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	4 cut(s)	196, 441, 481, 526
Mph1103I	ATGCAT	2 cut(s)	441, 489
MroI	TCCGGA	2 cut(s)	583, 858
MroXI	GAANNNNTTC	2 cut(s)	579, 612
MseI	TTAA	2 cut(s)	104, 818
MslI	CAYNNNNRTG	3 cut(s)	28, 438, 669
MspI	CCGG	4 cut(s)	249, 584, 692, 859
MspR9I	CCNGG	3 cut(s)	250, 774, 812
MunI	CAATTG	3 cut(s)	402, 603, 764
MvaI	CCWGG	2 cut(s)	774, 812
MwoI	GCNNNNNNNGC	4 cut(s)	153, 484, 533, 688
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	29
NdeI	CATATG	2 cut(s)	61, 435
NdeII	GATC	1 cut(s)	503
NlaIII	CATG	8 cut(s)	33, 400, 443, 491, 531, 668, 722, 841
NlaIV	GGNNCC	3 cut(s)	373, 374, 652
NsiI	ATGCAT	2 cut(s)	441, 489
NspI	RCATGY	4 cut(s)	443, 491, 531, 668
PaeI	GCATGC	2 cut(s)	443, 491
PdmI	GAANNNNTTC	2 cut(s)	579, 612
PfeI	GAWTC	1 cut(s)	790
PkrI	GCNGC	7 cut(s)	53, 149, 152, 155, 477, 730, 733
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	772, 810
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	2 cut(s)	772, 810
PspN4I	GGNNCC	3 cut(s)	373, 374, 652
PspPI	GGNCC	2 cut(s)	372, 548
PspPPI	RGGWCCY	1 cut(s)	372
PstI	CTGCAG	2 cut(s)	456, 874
RseI	CAYNNNNRTG	3 cut(s)	28, 438, 669
SaqAI	TTAA	2 cut(s)	104, 818
SatI	GCNGC	7 cut(s)	52, 148, 151, 154, 476, 729, 732
Sau3AI	GATC	1 cut(s)	503
Sau96I	GGNCC	2 cut(s)	372, 548
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	3 cut(s)	250, 774, 812
SfaNI	GCATC	2 cut(s)	700, 892
SfcI	CTRYAG	2 cut(s)	452, 870
SinI	GGWCC	2 cut(s)	372, 548
SmiMI	CAYNNNNRTG	3 cut(s)	28, 438, 669
SphI	GCATGC	2 cut(s)	443, 491
Sse9I	AATT	6 cut(s)	258, 402, 469, 603, 695, 764
SsiI	CCGC	7 cut(s)	52, 145, 148, 151, 154, 228, 732
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	2 cut(s)	198, 683
StyD4I	CCNGG	3 cut(s)	248, 772, 810
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	3 cut(s)	345, 559, 898
TasI	AATT	6 cut(s)	258, 402, 469, 603, 695, 764
TauI	GCSGC	5 cut(s)	54, 150, 153, 156, 734
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	2 cut(s)	104, 818
Tru9I	TTAA	2 cut(s)	104, 818
TscAI	CASTG	2 cut(s)	570, 666
TseI	GCWGC	2 cut(s)	475, 728
TspDTI	ATGAA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	570, 666
VpaK11BI	GGWCC	2 cut(s)	372, 548
XapI	RAATTY	3 cut(s)	258, 469, 695
XceI	RCATGY	4 cut(s)	443, 491, 531, 668
XcmI	CCANNNNNNNNNTGG	2 cut(s)	27, 770
XmnI	GAANNNNTTC	2 cut(s)	579, 612
XspI	CTAG	2 cut(s)	198, 683
Zsp2I	ATGCAT	2 cut(s)	441, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.