Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Reverse (-)

57327018 .. 57329017

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTGGCTCTTGTCCGGGCGTGGAATTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTAATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCTTATGTTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCAACATGCCTGCAATTGTTGGAAAATAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTATAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAAGTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCAGAAATACCCCAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCAGTGGGAAACCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTGTAAGTGTCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGTTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

229

Amino Acids

24.41

Weight (kDa)

6.06

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	12 - 223	5.4e-85	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	81 - 186	1.4e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	349
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	24, 461
AcuI	CTGAAG	2 cut(s)	114, 621
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	383, 535
AjnI	CCWGG	3 cut(s)	244, 538, 576
AjuI	GAANNNNNNNTTGG	2 cut(s)	436, 468
AluBI	AGCT	3 cut(s)	146, 497, 671
AluI	AGCT	3 cut(s)	146, 497, 671
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	1 cut(s)	277
Aor13HI	TCCGGA	1 cut(s)	349
AoxI	GGCC	2 cut(s)	314, 455
ApeKI	GCWGC	3 cut(s)	241, 494, 497
ApoI	RAATTY	2 cut(s)	24, 461
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	138, 314
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	449, 565
AvaII	GGWCC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	253, 484, 506
BccI	CCATC	4 cut(s)	128, 301, 434, 602
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	3 cut(s)	246, 540, 578
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	449
BisI	GCNGC	3 cut(s)	242, 495, 498
BlsI	GCNGC	3 cut(s)	243, 496, 499
Bme1390I	CCNGG	4 cut(s)	16, 246, 540, 578
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	138, 314
BmiI	GGNNCC	3 cut(s)	139, 140, 418
BmrFI	CCNGG	4 cut(s)	16, 246, 540, 578
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	2 cut(s)	486, 561
BpuMI	CCSGG	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	364
BsaWI	WCCGGW	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	1 cut(s)	560
Bse3DI	GCAATG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	349
BseBI	CCWGG	3 cut(s)	246, 540, 578
BseGI	GGATG	2 cut(s)	268, 613
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	438, 686
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	3 cut(s)	253, 484, 506
BseYI	CCCAGC	1 cut(s)	142
BsgI	GTGCAG	2 cut(s)	177, 411
BshFI	GGCC	2 cut(s)	316, 457
BsiSI	CCGG	2 cut(s)	15, 350
BslFI	GGGAC	3 cut(s)	118, 151, 289
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	3 cut(s)	118, 151, 289
BsnI	GGCC	2 cut(s)	316, 457
Bso31I	GGTCTC	1 cut(s)	364
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	269
BspANI	GGCC	2 cut(s)	316, 457
BspCNI	CTCAG	2 cut(s)	437, 685
BspEI	TCCGGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	139, 140, 418
BspPI	GGATC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	560
BssMI	GATC	1 cut(s)	269
Bst2UI	CCWGG	3 cut(s)	246, 540, 578
Bst6I	CTCTTC	1 cut(s)	367
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	3 cut(s)	207, 218, 255
BstDEI	CTNAG	2 cut(s)	424, 672
BstENI	CCTNNNNNAGG	1 cut(s)	575
BstF5I	GGATG	2 cut(s)	268, 613
BstKTI	GATC	1 cut(s)	272
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 299, 454
BstNI	CCWGG	3 cut(s)	246, 540, 578
BstNSI	RCATGY	5 cut(s)	209, 216, 257, 297, 434
BstSCI	CCNGG	4 cut(s)	14, 244, 538, 576
BstV1I	GCAGC	3 cut(s)	253, 484, 506
BsuRI	GGCC	2 cut(s)	316, 457
BtsCI	GGATG	2 cut(s)	268, 613
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	3 cut(s)	336, 432, 567
Cac8I	GCNNGC	3 cut(s)	207, 218, 255
Cfr13I	GGNCC	2 cut(s)	138, 314
CviAII	CATG	8 cut(s)	163, 206, 213, 254, 294, 431, 485, 604
DdeI	CTNAG	2 cut(s)	424, 672
DpnI	GATC	1 cut(s)	271
DpnII	GATC	1 cut(s)	269
DraI	TTTAAA	1 cut(s)	585
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	138
Eco57I	CTGAAG	2 cut(s)	114, 621
EcoNI	CCTNNNNNAGG	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	244, 538, 576
EcoT22I	ATGCAT	2 cut(s)	207, 255
FaeI	CATG	8 cut(s)	166, 209, 216, 257, 297, 434, 488, 607
FaqI	GGGAC	3 cut(s)	118, 151, 289
FatI	CATG	8 cut(s)	162, 205, 212, 253, 293, 430, 484, 603
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	242, 495, 498
FokI	GGATG	2 cut(s)	275, 620
Fsp4HI	GCNGC	3 cut(s)	242, 495, 498
FspBI	CTAG	1 cut(s)	449
GluI	GCNGC	3 cut(s)	242, 495, 498
GsaI	CCCAGC	1 cut(s)	146
GsuI	CTGGAG	2 cut(s)	486, 561
HaeIII	GGCC	2 cut(s)	316, 457
HapII	CCGG	2 cut(s)	15, 350
Hin1II	CATG	8 cut(s)	166, 209, 216, 257, 297, 434, 488, 607
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	155, 556
HpaII	CCGG	2 cut(s)	15, 350
HphI	GGTGA	2 cut(s)	449, 565
Hpy166II	GTNNAC	2 cut(s)	154, 595
Hpy188III	TCNNGA	5 cut(s)	29, 350, 503, 625, 665
Hpy8I	GTNNAC	2 cut(s)	154, 595
HpyAV	CCTTC	3 cut(s)	79, 407, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 299, 454
HpyF3I	CTNAG	2 cut(s)	424, 672
Hsp92II	CATG	8 cut(s)	166, 209, 216, 257, 297, 434, 488, 607
KflI	GGGWCCC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	269
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	3 cut(s)	253, 484, 506
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	449
MalI	GATC	1 cut(s)	271
MboI	GATC	1 cut(s)	269
MboII	GAAGA	2 cut(s)	354, 558
MfeI	CAATTG	3 cut(s)	221, 369, 530
MluCI	AATT	6 cut(s)	24, 221, 235, 369, 461, 530
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	207, 247
MnlI	CCTC	5 cut(s)	43, 376, 431, 536, 674
Mph1103I	ATGCAT	2 cut(s)	207, 255
MroI	TCCGGA	1 cut(s)	349
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	584
MslI	CAYNNNNRTG	2 cut(s)	204, 435
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	15, 350
MspR9I	CCNGG	4 cut(s)	16, 246, 540, 578
MunI	CAATTG	3 cut(s)	221, 369, 530
MvaI	CCWGG	3 cut(s)	246, 540, 578
MwoI	GCNNNNNNNGC	3 cut(s)	250, 299, 454
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	1 cut(s)	269
NlaIII	CATG	8 cut(s)	166, 209, 216, 257, 297, 434, 488, 607
NlaIV	GGNNCC	3 cut(s)	139, 140, 418
NsiI	ATGCAT	2 cut(s)	207, 255
NspI	RCATGY	5 cut(s)	209, 216, 257, 297, 434
PaeI	GCATGC	2 cut(s)	209, 257
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	243, 496, 499
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	138
PsiI	TTATAA	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	3 cut(s)	244, 538, 576
PspFI	CCCAGC	1 cut(s)	142
PspGI	CCWGG	3 cut(s)	244, 538, 576
PspN4I	GGNNCC	3 cut(s)	139, 140, 418
PspPI	GGNCC	2 cut(s)	138, 314
PspPPI	RGGWCCY	1 cut(s)	138
PvuII	CAGCTG	1 cut(s)	497
RseI	CAYNNNNRTG	2 cut(s)	204, 435
SaqAI	TTAA	1 cut(s)	584
SatI	GCNGC	3 cut(s)	242, 495, 498
Sau3AI	GATC	1 cut(s)	269
Sau96I	GGNCC	2 cut(s)	138, 314
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	4 cut(s)	16, 246, 540, 578
SfaNI	GCATC	1 cut(s)	466
SinI	GGWCC	1 cut(s)	138
SmiMI	CAYNNNNRTG	2 cut(s)	204, 435
SphI	GCATGC	2 cut(s)	209, 257
Sse9I	AATT	6 cut(s)	24, 221, 235, 369, 461, 530
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	4 cut(s)	14, 244, 538, 576
TaqI	TCGA	3 cut(s)	167, 325, 664
TasI	AATT	6 cut(s)	24, 221, 235, 369, 461, 530
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	1 cut(s)	584
Tru9I	TTAA	1 cut(s)	584
TscAI	CASTG	3 cut(s)	336, 432, 567
TseI	GCWGC	3 cut(s)	241, 494, 497
TspDTI	ATGAA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	336, 432, 567
VpaK11BI	GGWCC	1 cut(s)	138
XagI	CCTNNNNNAGG	1 cut(s)	575
XapI	RAATTY	2 cut(s)	24, 461
XceI	RCATGY	5 cut(s)	209, 216, 257, 297, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	1 cut(s)	449
Zsp2I	ATGCAT	2 cut(s)	207, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.