Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

26101380 .. 26103405

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1167700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAAAAGCAGTCTTTTTTTATCCCCTGCAGCAGCAAGAGCAACAAGAAGTATAGGCCACTTAGCTTATGGTTCCCGCTATCCAGCCCACACTGTGCAACACCGCTTAACCTTCACCGCTCTCTCTCATCGCCATAGTCGTCGTCACACGTTCGCACTCCTTCCAACCACCGCTCTGTCCTCCTGGCCCCTCCTCCAAAACCCTAATTTCCTCACGGGGAACCGTAACGCCCCCTTCCGCGGAATGGAGCGACACTGCTCCGGGAGTAGCATTAATAGGAACAAGGGGATGGTGGATCATCTGAAGAGTTATGGAGTGATTAAATCCAAAAGGGTTGCTGAAGTGATGGAGACTATTGACAGAGCTTTGTTCGTGCCTAATGGGACCCCGCCGTATGTTGATTCCCCCATGTCAATAGGTTATAATGCCACCATTTCTGCACCTCATATGCATGCAATGTGCCTTCAGTTGTTGGAAGAGAATCTGCAACCCGGAATGCGTGCTTTGGATGTTGGCTCAGGCAAGATTTTTGCAATTGATATGCTTCATGTTGAAGGCAGTCATAGAGATCCTGACACTTCCTTTCATGTATTTTGTTTTGCAGGGACGGGATACTTGACGGCGTGTTTTGGGTTGATGGTTGGGCCGCAAGGCCGTGCAGTTGGTGTAGAGCACATTCCTGAGTTGGTTTCTTCTTCAATTACGAATATTGAAAAAAGTGCTGCCGGAAAATTATTGAAAGAAGGTTCCCTTTCTGTGCATCTCGGTGATGGACGGCAAGGTTGGCCGGAATTTGCTCCTTATGATGCCATCCATGTCGGCGCAGCTGCACCAGAAATCCCGCAACCACTTGTTGACCAATTGAGGCCGGGAGGCAGAATGGTGATTCCGGTGGGAAACATATTCCAGGATCTGAAGGTTGTGGACAAGGGCTTGGATGGTTCAATCAGCGTCCGGACTGGAACTTCTGTTCGGTATGTTCCTCTCACAAGCCGAGATGCTCAGCTGCGAGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

340

Amino Acids

36.74

Weight (kDa)

9.43

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	93 - 175	2.5e-27	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PCMT	PF01135	201 - 333	2.1e-48	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AccBSI	CCGCTC	2 cut(s)	119, 173
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	954
AciI	CCGC	9 cut(s)	76, 103, 117, 171, 238, 240, 389, 647, 842
AclWI	GGATC	3 cut(s)	303, 563, 918
AcoI	YGGCCR	1 cut(s)	785
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	4 cut(s)	323, 360, 449, 935
AdeI	CACNNNGTG	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	239, 244
AflIII	ACRYGT	1 cut(s)	147
AgsI	TTSAA	5 cut(s)	554, 699, 713, 739, 945
AjnI	CCWGG	2 cut(s)	182, 906
AloI	GAACNNNNNNTCC	2 cut(s)	954, 986
AluBI	AGCT	4 cut(s)	65, 365, 827, 1006
AluI	AGCT	4 cut(s)	65, 365, 827, 1006
Alw21I	GWGCWC	1 cut(s)	675
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	3 cut(s)	303, 563, 918
AlwNI	CAGNNNCTG	1 cut(s)	913
Aor13HI	TCCGGA	1 cut(s)	954
AoxI	GGCC	6 cut(s)	55, 185, 644, 652, 785, 866
ApeKI	GCWGC	6 cut(s)	29, 32, 722, 824, 827, 1006
ApoI	RAATTY	1 cut(s)	791
AseI	ATTAAT	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	824
AspS9I	GGNCC	3 cut(s)	186, 384, 644
AsuC2I	CCSGG	3 cut(s)	262, 492, 870
AsuHPI	GGTGA	3 cut(s)	106, 779, 895
AvaII	GGWCC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	675
BbvI	GCAGC	6 cut(s)	41, 44, 709, 814, 836, 993
BccI	CCATC	6 cut(s)	283, 340, 631, 764, 818, 932
BceAI	ACGGC	4 cut(s)	376, 636, 639, 791
BciT130I	CCWGG	2 cut(s)	184, 908
BciVI	GTATCC	1 cut(s)	605
BcnI	CCSGG	3 cut(s)	262, 492, 870
BcoDI	GTCTC	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	27
BfuI	GTATCC	1 cut(s)	605
BisI	GCNGC	7 cut(s)	30, 33, 647, 723, 825, 828, 1007
BlpI	GCTNAGC	1 cut(s)	1002
BlsI	GCNGC	7 cut(s)	31, 34, 648, 724, 826, 829, 1008
Bme1390I	CCNGG	5 cut(s)	184, 262, 492, 870, 908
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	3 cut(s)	186, 384, 644
BmiI	GGNNCC	6 cut(s)	73, 188, 221, 385, 386, 748
BmrFI	CCNGG	5 cut(s)	184, 262, 492, 870, 908
BmsI	GCATC	3 cut(s)	769, 796, 988
Bpu10I	CCTNAGC	1 cut(s)	517
Bpu1102I	GCTNAGC	1 cut(s)	1002
BpuMI	CCSGG	3 cut(s)	262, 492, 870
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	889, 954
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 244
Bse1I	ACTGG	1 cut(s)	964
Bse3DI	GCAATG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	954
BseBI	CCWGG	2 cut(s)	184, 908
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	4 cut(s)	294, 514, 810, 943
BseLI	CCNNNNNNNGG	2 cut(s)	239, 244
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	531, 672, 1016
BseNI	ACTGG	1 cut(s)	964
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	6 cut(s)	41, 44, 709, 814, 836, 993
BsgI	GTGCAG	3 cut(s)	423, 678, 813
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	6 cut(s)	57, 187, 646, 654, 787, 868
BsiHKAI	GWGCWC	1 cut(s)	675
BsiSI	CCGG	7 cut(s)	261, 492, 726, 788, 869, 890, 955
BslFI	GGGAC	2 cut(s)	397, 619
BslI	CCNNNNNNNGG	2 cut(s)	239, 244
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	397, 619
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	6 cut(s)	57, 187, 646, 654, 787, 868
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp13I	TCCGGA	1 cut(s)	954
Bsp143I	GATC	3 cut(s)	295, 568, 910
Bsp1720I	GCTNAGC	1 cut(s)	1002
BspACI	CCGC	9 cut(s)	76, 103, 117, 171, 238, 240, 389, 647, 842
BspANI	GGCC	6 cut(s)	57, 187, 646, 654, 787, 868
BspCNI	CTCAG	3 cut(s)	530, 673, 1015
BspEI	TCCGGA	1 cut(s)	954
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	6 cut(s)	73, 188, 221, 385, 386, 748
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	3 cut(s)	303, 563, 918
BsrBI	CCGCTC	2 cut(s)	119, 173
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	964
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	295, 568, 910
Bst2UI	CCWGG	2 cut(s)	184, 908
Bst4CI	ACNGT	2 cut(s)	94, 224
Bst6I	CTCTTC	2 cut(s)	299, 471
BstC8I	GCNNGC	2 cut(s)	453, 501
BstDEI	CTNAG	4 cut(s)	61, 517, 681, 1002
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	4 cut(s)	294, 514, 810, 943
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	824
BstKTI	GATC	3 cut(s)	298, 571, 913
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	295, 568, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 784
BstNI	CCWGG	2 cut(s)	184, 908
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	5 cut(s)	182, 260, 490, 868, 906
BstSFI	CTRYAG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	6 cut(s)	41, 44, 709, 814, 836, 993
BstX2I	RGATCY	2 cut(s)	568, 910
BstYI	RGATCY	2 cut(s)	568, 910
BsuI	GTATCC	1 cut(s)	605
BsuRI	GGCC	6 cut(s)	57, 187, 646, 654, 787, 868
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	4 cut(s)	294, 514, 810, 943
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	2 cut(s)	90, 253
Cac8I	GCNNGC	2 cut(s)	453, 501
CaiI	CAGNNNCTG	1 cut(s)	913
CfoI	GCGC	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	186, 384, 644
Cfr42I	CCGCGG	1 cut(s)	241
CseI	GACGC	1 cut(s)	940
CviAII	CATG	5 cut(s)	409, 452, 548, 587, 815
DdeI	CTNAG	4 cut(s)	61, 517, 681, 1002
DpnI	GATC	3 cut(s)	297, 570, 912
DpnII	GATC	3 cut(s)	295, 568, 910
DraIII	CACNNNGTG	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	785
Eam1104I	CTCTTC	2 cut(s)	299, 471
EarI	CTCTTC	2 cut(s)	299, 471
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	4 cut(s)	323, 360, 449, 935
EcoO109I	RGGNCCY	1 cut(s)	384
EcoRII	CCWGG	2 cut(s)	182, 906
EcoT22I	ATGCAT	1 cut(s)	453
FaeI	CATG	5 cut(s)	412, 455, 551, 590, 818
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	2 cut(s)	397, 619
FatI	CATG	5 cut(s)	408, 451, 547, 586, 814
FauI	CCCGC	3 cut(s)	83, 396, 849
FauNDI	CATATG	1 cut(s)	447
Fnu4HI	GCNGC	7 cut(s)	30, 33, 647, 723, 825, 828, 1007
FokI	GGATG	4 cut(s)	301, 521, 797, 950
Fsp4HI	GCNGC	7 cut(s)	30, 33, 647, 723, 825, 828, 1007
GlaI	GCGC	1 cut(s)	823
GluI	GCNGC	7 cut(s)	30, 33, 647, 723, 825, 828, 1007
HaeIII	GGCC	6 cut(s)	57, 187, 646, 654, 787, 868
HapII	CCGG	7 cut(s)	261, 492, 726, 788, 869, 890, 955
HgaI	GACGC	1 cut(s)	940
HhaI	GCGC	1 cut(s)	824
Hin1II	CATG	5 cut(s)	412, 455, 551, 590, 818
Hin6I	GCGC	1 cut(s)	822
HinP1I	GCGC	1 cut(s)	822
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	401, 481, 886
HpaII	CCGG	7 cut(s)	261, 492, 726, 788, 869, 890, 955
HphI	GGTGA	3 cut(s)	106, 779, 895
Hpy166II	GTNNAC	2 cut(s)	856, 925
Hpy188I	TCNGA	2 cut(s)	303, 915
Hpy188III	TCNNGA	4 cut(s)	572, 680, 955, 1017
Hpy8I	GTNNAC	2 cut(s)	856, 925
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	7 cut(s)	121, 170, 244, 473, 548, 737, 910
HpyCH4III	ACNGT	2 cut(s)	94, 224
HpyCH4IV	ACGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 784
HpyF3I	CTNAG	4 cut(s)	61, 517, 681, 1002
HpySE526I	ACGT	1 cut(s)	149
Hsp92II	CATG	5 cut(s)	412, 455, 551, 590, 818
HspAI	GCGC	1 cut(s)	822
KflI	GGGWCCC	1 cut(s)	384
Kpn2I	TCCGGA	1 cut(s)	954
KspI	CCGCGG	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	295, 568, 910
LmnI	GCTCC	3 cut(s)	247, 263, 802
Lsp1109I	GCAGC	6 cut(s)	41, 44, 709, 814, 836, 993
LweI	GCATC	3 cut(s)	769, 796, 988
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	143, 224
MalI	GATC	3 cut(s)	297, 570, 912
MbiI	CCGCTC	2 cut(s)	119, 173
MboI	GATC	3 cut(s)	295, 568, 910
MboII	GAAGA	4 cut(s)	316, 488, 684, 687
MfeI	CAATTG	2 cut(s)	534, 860
MflI	RGATCY	2 cut(s)	568, 910
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	6 cut(s)	205, 534, 699, 731, 791, 860
MmeI	TCCRAC	2 cut(s)	188, 453
MnlI	CCTC	9 cut(s)	190, 200, 203, 221, 453, 858, 866, 993, 1004
Mph1103I	ATGCAT	1 cut(s)	453
MroI	TCCGGA	1 cut(s)	954
MseI	TTAA	3 cut(s)	107, 273, 321
MslI	CAYNNNNRTG	2 cut(s)	450, 765
MspA1I	CMGCKG	3 cut(s)	240, 827, 1006
MspI	CCGG	7 cut(s)	261, 492, 726, 788, 869, 890, 955
MspR9I	CCNGG	5 cut(s)	184, 262, 492, 870, 908
MunI	CAATTG	2 cut(s)	534, 860
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	184, 908
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	38, 784
NciI	CCSGG	3 cut(s)	262, 492, 870
NdeI	CATATG	1 cut(s)	447
NdeII	GATC	3 cut(s)	295, 568, 910
NlaIII	CATG	5 cut(s)	412, 455, 551, 590, 818
NlaIV	GGNNCC	6 cut(s)	73, 188, 221, 385, 386, 748
NmeAIII	GCCGAG	1 cut(s)	1019
NmuCI	GTSAC	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	453
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PctI	GAATGC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	401, 481, 886
PfoI	TCCNGGA	2 cut(s)	260, 906
PkrI	GCNGC	7 cut(s)	31, 34, 648, 724, 826, 829, 1008
PpuMI	RGGWCCY	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	182, 906
PspGI	CCWGG	2 cut(s)	182, 906
PspN4I	GGNNCC	6 cut(s)	73, 188, 221, 385, 386, 748
PspPI	GGNCC	3 cut(s)	186, 384, 644
PspPPI	RGGWCCY	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	2 cut(s)	568, 910
PvuII	CAGCTG	2 cut(s)	827, 1006
RseI	CAYNNNNRTG	2 cut(s)	450, 765
SacII	CCGCGG	1 cut(s)	241
SaqAI	TTAA	3 cut(s)	107, 273, 321
SatI	GCNGC	7 cut(s)	30, 33, 647, 723, 825, 828, 1007
Sau3AI	GATC	3 cut(s)	295, 568, 910
Sau96I	GGNCC	3 cut(s)	186, 384, 644
ScrFI	CCNGG	5 cut(s)	184, 262, 492, 870, 908
SduI	GDGCHC	1 cut(s)	675
SfaNI	GCATC	3 cut(s)	769, 796, 988
SfcI	CTRYAG	1 cut(s)	27
Sfr303I	CCGCGG	1 cut(s)	241
SgrBI	CCGCGG	1 cut(s)	241
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	450, 765
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	6 cut(s)	205, 534, 699, 731, 791, 860
SsiI	CCGC	9 cut(s)	76, 103, 117, 171, 238, 240, 389, 647, 842
SspI	AATATT	1 cut(s)	709
StyD4I	CCNGG	5 cut(s)	182, 260, 490, 868, 906
TaaI	ACNGT	2 cut(s)	94, 224
TaiI	ACGT	1 cut(s)	152
TasI	AATT	6 cut(s)	205, 534, 699, 731, 791, 860
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	3 cut(s)	401, 481, 886
Tru1I	TTAA	3 cut(s)	107, 273, 321
Tru9I	TTAA	3 cut(s)	107, 273, 321
TscAI	CASTG	2 cut(s)	97, 260
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	6 cut(s)	29, 32, 722, 824, 827, 1006
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	3 cut(s)	17, 536, 575
TspRI	CASTG	2 cut(s)	97, 260
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.