Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

9613666 .. 9615358

Gene Structure 1693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCGTGGCTCTTGTCCGGGCATGGAGTTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCGTATGCTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTGTAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAACTGCAGTAGCACCATTACTTAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCCGAAATACCGCAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAATATATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTCTAAGTATCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGCTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

230

Amino Acids

24.46

Weight (kDa)

6.15

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	13 - 224	1e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	82 - 151	4.7e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	352
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	238, 464
AcuI	CTGAAG	2 cut(s)	117, 624
AgsI	TTSAA	2 cut(s)	386, 538
AjnI	CCWGG	3 cut(s)	247, 541, 579
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	3 cut(s)	500, 674, 679
AluI	AGCT	3 cut(s)	500, 674, 679
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	280
Aor13HI	TCCGGA	1 cut(s)	352
AoxI	GGCC	2 cut(s)	317, 458
ApeKI	GCWGC	4 cut(s)	244, 497, 500, 679
ApoI	RAATTY	2 cut(s)	238, 464
ArsI	GACNNNNNNTTYG	2 cut(s)	271, 303
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	141, 317
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	452, 568
AvaII	GGWCC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	256, 487, 509, 666
BccI	CCATC	5 cut(s)	97, 131, 304, 437, 605
BceAI	ACGGC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	3 cut(s)	249, 543, 581
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	4 cut(s)	245, 498, 501, 680
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	4 cut(s)	246, 499, 502, 681
Bme1390I	CCNGG	4 cut(s)	19, 249, 543, 581
Bme18I	GGWCC	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	141, 317
BmiI	GGNNCC	3 cut(s)	142, 143, 421
BmrFI	CCNGG	4 cut(s)	19, 249, 543, 581
BmsI	GCATC	1 cut(s)	469
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	19
BsaI	GGTCTC	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	51
BseAI	TCCGGA	1 cut(s)	352
BseBI	CCWGG	3 cut(s)	249, 543, 581
BseGI	GGATG	2 cut(s)	271, 616
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	441, 689
BseXI	GCAGC	4 cut(s)	256, 487, 509, 666
BseYI	CCCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	180
BshFI	GGCC	2 cut(s)	319, 460
BsiSI	CCGG	2 cut(s)	18, 353
BslFI	GGGAC	3 cut(s)	121, 154, 292
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	3 cut(s)	121, 154, 292
BsnI	GGCC	2 cut(s)	319, 460
Bso31I	GGTCTC	1 cut(s)	367
Bsp13I	TCCGGA	1 cut(s)	352
Bsp143I	GATC	1 cut(s)	272
Bsp1720I	GCTNAGC	1 cut(s)	675
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	2 cut(s)	319, 460
BspCNI	CTCAG	2 cut(s)	440, 688
BspEI	TCCGGA	1 cut(s)	352
BspLI	GGNNCC	3 cut(s)	142, 143, 421
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	51
BssMI	GATC	1 cut(s)	272
Bst2UI	CCWGG	3 cut(s)	249, 543, 581
Bst6I	CTCTTC	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	210, 221, 258
BstDEI	CTNAG	3 cut(s)	427, 620, 675
BstF5I	GGATG	2 cut(s)	271, 616
BstKTI	GATC	1 cut(s)	275
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	3 cut(s)	253, 302, 457
BstNI	CCWGG	3 cut(s)	249, 543, 581
BstNSI	RCATGY	5 cut(s)	212, 219, 260, 300, 437
BstSCI	CCNGG	4 cut(s)	17, 247, 541, 579
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	256, 487, 509, 666
BsuRI	GGCC	2 cut(s)	319, 460
BtsCI	GGATG	2 cut(s)	271, 616
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	339, 435
Cac8I	GCNNGC	3 cut(s)	210, 221, 258
Cfr13I	GGNCC	2 cut(s)	141, 317
CviAII	CATG	9 cut(s)	23, 166, 209, 216, 257, 297, 434, 488, 607
DdeI	CTNAG	3 cut(s)	427, 620, 675
DpnI	GATC	1 cut(s)	274
DpnII	GATC	1 cut(s)	272
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	117, 624
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRII	CCWGG	3 cut(s)	247, 541, 579
EcoT22I	ATGCAT	2 cut(s)	210, 258
FaeI	CATG	9 cut(s)	26, 169, 212, 219, 260, 300, 437, 491, 610
FaqI	GGGAC	3 cut(s)	121, 154, 292
FatI	CATG	9 cut(s)	22, 165, 208, 215, 256, 296, 433, 487, 606
FauNDI	CATATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	245, 498, 501, 680
FokI	GGATG	2 cut(s)	278, 623
Fsp4HI	GCNGC	4 cut(s)	245, 498, 501, 680
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	4 cut(s)	245, 498, 501, 680
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	319, 460
HapII	CCGG	2 cut(s)	18, 353
Hin1II	CATG	9 cut(s)	26, 169, 212, 219, 260, 300, 437, 491, 610
HinfI	GANTC	2 cut(s)	158, 559
HpaII	CCGG	2 cut(s)	18, 353
HphI	GGTGA	2 cut(s)	452, 568
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188III	TCNNGA	5 cut(s)	32, 353, 506, 628, 668
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	3 cut(s)	82, 410, 441
HpyF10VI	GCNNNNNNNGC	3 cut(s)	253, 302, 457
HpyF3I	CTNAG	3 cut(s)	427, 620, 675
Hsp92II	CATG	9 cut(s)	26, 169, 212, 219, 260, 300, 437, 491, 610
KflI	GGGWCCC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	272
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	4 cut(s)	256, 487, 509, 666
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	452
MalI	GATC	1 cut(s)	274
MboI	GATC	1 cut(s)	272
MboII	GAAGA	2 cut(s)	357, 561
MfeI	CAATTG	3 cut(s)	224, 372, 533
MluCI	AATT	5 cut(s)	224, 238, 372, 464, 533
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	2 cut(s)	210, 250
MnlI	CCTC	5 cut(s)	46, 379, 434, 539, 677
Mph1103I	ATGCAT	2 cut(s)	210, 258
MroI	TCCGGA	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	411, 587
MslI	CAYNNNNRTG	2 cut(s)	207, 438
MspA1I	CMGCKG	2 cut(s)	500, 679
MspI	CCGG	2 cut(s)	18, 353
MspR9I	CCNGG	4 cut(s)	19, 249, 543, 581
MunI	CAATTG	3 cut(s)	224, 372, 533
MvaI	CCWGG	3 cut(s)	249, 543, 581
MwoI	GCNNNNNNNGC	3 cut(s)	253, 302, 457
NciI	CCSGG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	204
NdeII	GATC	1 cut(s)	272
NlaIII	CATG	9 cut(s)	26, 169, 212, 219, 260, 300, 437, 491, 610
NlaIV	GGNNCC	3 cut(s)	142, 143, 421
NsiI	ATGCAT	2 cut(s)	210, 258
NspI	RCATGY	5 cut(s)	212, 219, 260, 300, 437
PaeI	GCATGC	2 cut(s)	212, 260
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	559
PkrI	GCNGC	4 cut(s)	246, 499, 502, 681
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	141
PsiI	TTATAA	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	141
Psp6I	CCWGG	3 cut(s)	247, 541, 579
PspFI	CCCAGC	1 cut(s)	145
PspGI	CCWGG	3 cut(s)	247, 541, 579
PspN4I	GGNNCC	3 cut(s)	142, 143, 421
PspPI	GGNCC	2 cut(s)	141, 317
PspPPI	RGGWCCY	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	397
PvuII	CAGCTG	2 cut(s)	500, 679
RseI	CAYNNNNRTG	2 cut(s)	207, 438
SaqAI	TTAA	2 cut(s)	411, 587
SatI	GCNGC	4 cut(s)	245, 498, 501, 680
Sau3AI	GATC	1 cut(s)	272
Sau96I	GGNCC	2 cut(s)	141, 317
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	4 cut(s)	19, 249, 543, 581
SfaNI	GCATC	1 cut(s)	469
SfcI	CTRYAG	1 cut(s)	393
SinI	GGWCC	1 cut(s)	141
SmiMI	CAYNNNNRTG	2 cut(s)	207, 438
SphI	GCATGC	2 cut(s)	212, 260
Sse9I	AATT	5 cut(s)	224, 238, 372, 464, 533
SsiI	CCGC	1 cut(s)	515
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	17, 247, 541, 579
TaqI	TCGA	3 cut(s)	170, 328, 667
TasI	AATT	5 cut(s)	224, 238, 372, 464, 533
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	2 cut(s)	411, 587
Tru9I	TTAA	2 cut(s)	411, 587
TscAI	CASTG	2 cut(s)	339, 435
TseI	GCWGC	4 cut(s)	244, 497, 500, 679
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	2 cut(s)	339, 435
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	2 cut(s)	238, 464
XceI	RCATGY	5 cut(s)	212, 219, 260, 300, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	452
Zsp2I	ATGCAT	2 cut(s)	210, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.