Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Forward (+)

10635430 .. 10637757

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCTACGCCCTCTACAACAACCCACCTCTTAACCTTCGCCCCTACTCGCTCTTTCTCTCACCTTCACCGTCTCCGCCGCACAGTCTCACTCCTCCGACCACCCACTCTCTCCTCCTGTCCTAATTTCCTCACGGGTAACTCTCACTTCTGCGGAATGGCGTGGCTCTTGTCCGGGCGTGGAATTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATTAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGAGCCCAGCTTATGTTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCCACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTATAGAACACATTCCGGAGTTGGTCTCTTCCTCAATTGAGAATATTCAAAAAACTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCCGAAATACCGCAACCACTTATTGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAATCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTTTAAGTATCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGCTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

282

Amino Acids

30.29

Weight (kDa)

8.66

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	65 - 276	1.8e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	134 - 202	3.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	5
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	4 cut(s)	76, 79, 153, 671
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	183, 394, 620
AcuI	CTGAAG	2 cut(s)	273, 780
AgsI	TTSAA	2 cut(s)	542, 694
AjnI	CCWGG	3 cut(s)	403, 697, 735
AjuI	GAANNNNNNNTTGG	2 cut(s)	595, 627
AluBI	AGCT	4 cut(s)	305, 656, 830, 835
AluI	AGCT	4 cut(s)	305, 656, 830, 835
Alw26I	GTCTC	3 cut(s)	77, 91, 523
AlwI	GGATC	1 cut(s)	436
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	2 cut(s)	473, 614
ApeKI	GCWGC	4 cut(s)	400, 653, 656, 835
ApoI	RAATTY	3 cut(s)	183, 394, 620
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	1 cut(s)	473
AsuC2I	CCSGG	1 cut(s)	175
AsuHPI	GGTGA	4 cut(s)	53, 59, 608, 724
BanII	GRGCYC	1 cut(s)	302
BbvI	GCAGC	4 cut(s)	412, 643, 665, 822
BccI	CCATC	5 cut(s)	253, 287, 460, 593, 761
BceAI	ACGGC	1 cut(s)	465
BciT130I	CCWGG	3 cut(s)	405, 699, 737
BcnI	CCSGG	1 cut(s)	175
BcoDI	GTCTC	3 cut(s)	77, 91, 523
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	549
BisI	GCNGC	5 cut(s)	79, 401, 654, 657, 836
BlpI	GCTNAGC	1 cut(s)	831
BlsI	GCNGC	5 cut(s)	80, 402, 655, 658, 837
Bme1390I	CCNGG	4 cut(s)	175, 405, 699, 737
BmgT120I	GGNCC	1 cut(s)	473
BmiI	GGNNCC	2 cut(s)	299, 577
BmrFI	CCNGG	4 cut(s)	175, 405, 699, 737
BmsI	GCATC	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	503, 535
BpmI	CTGGAG	1 cut(s)	720
Bpu1102I	GCTNAGC	1 cut(s)	831
BpuMI	CCSGG	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	523
BsaWI	WCCGGW	1 cut(s)	508
Bse3DI	GCAATG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	508
BseBI	CCWGG	3 cut(s)	405, 699, 737
BseGI	GGATG	2 cut(s)	427, 772
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	597, 845
BseRI	GAGGAG	2 cut(s)	83, 103
BseXI	GCAGC	4 cut(s)	412, 643, 665, 822
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	475, 616
BsiSI	CCGG	2 cut(s)	174, 509
BslFI	GGGAC	2 cut(s)	277, 448
BsmAI	GTCTC	3 cut(s)	77, 91, 523
BsmBI	CGTCTC	1 cut(s)	77
BsmFI	GGGAC	2 cut(s)	277, 448
BsnI	GGCC	2 cut(s)	475, 616
Bso31I	GGTCTC	1 cut(s)	523
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	1 cut(s)	428
Bsp1720I	GCTNAGC	1 cut(s)	831
BspACI	CCGC	4 cut(s)	76, 79, 153, 671
BspANI	GGCC	2 cut(s)	475, 616
BspCNI	CTCAG	2 cut(s)	596, 844
BspEI	TCCGGA	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	299, 577
BspMAI	CTGCAG	1 cut(s)	553
BspPI	GGATC	1 cut(s)	436
BspTNI	GGTCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	207
BssMI	GATC	1 cut(s)	428
Bst2UI	CCWGG	3 cut(s)	405, 699, 737
Bst4CI	ACNGT	2 cut(s)	71, 85
Bst6I	CTCTTC	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	3 cut(s)	366, 377, 414
BstDEI	CTNAG	2 cut(s)	583, 831
BstF5I	GGATG	2 cut(s)	427, 772
BstKTI	GATC	1 cut(s)	431
BstMAI	GTCTC	3 cut(s)	77, 91, 523
BstMBI	GATC	1 cut(s)	428
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 458, 613
BstNI	CCWGG	3 cut(s)	405, 699, 737
BstNSI	RCATGY	5 cut(s)	368, 375, 416, 456, 593
BstSCI	CCNGG	4 cut(s)	173, 403, 697, 735
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	4 cut(s)	412, 643, 665, 822
BsuRI	GGCC	2 cut(s)	475, 616
BtsCI	GGATG	2 cut(s)	427, 772
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	495, 591
Cac8I	GCNNGC	3 cut(s)	366, 377, 414
Cfr13I	GGNCC	1 cut(s)	473
CviAII	CATG	8 cut(s)	322, 365, 372, 413, 453, 590, 644, 763
DdeI	CTNAG	2 cut(s)	583, 831
DpnI	GATC	1 cut(s)	430
DpnII	GATC	1 cut(s)	428
DraI	TTTAAA	1 cut(s)	744
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	523
Eco57I	CTGAAG	2 cut(s)	273, 780
EcoRI	GAATTC	1 cut(s)	183
EcoRII	CCWGG	3 cut(s)	403, 697, 735
EcoT22I	ATGCAT	2 cut(s)	366, 414
EcoT38I	GRGCYC	1 cut(s)	302
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	8 cut(s)	325, 368, 375, 416, 456, 593, 647, 766
FaqI	GGGAC	2 cut(s)	277, 448
FatI	CATG	8 cut(s)	321, 364, 371, 412, 452, 589, 643, 762
FauNDI	CATATG	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	79, 401, 654, 657, 836
FokI	GGATG	2 cut(s)	434, 779
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	5 cut(s)	79, 401, 654, 657, 836
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	5 cut(s)	79, 401, 654, 657, 836
GsaI	CCCAGC	1 cut(s)	305
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	475, 616
HapII	CCGG	2 cut(s)	174, 509
Hin1II	CATG	8 cut(s)	325, 368, 375, 416, 456, 593, 647, 766
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	314, 715
HpaII	CCGG	2 cut(s)	174, 509
HphI	GGTGA	4 cut(s)	53, 59, 608, 724
Hpy166II	GTNNAC	3 cut(s)	6, 313, 754
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	5 cut(s)	188, 509, 662, 784, 824
Hpy8I	GTNNAC	3 cut(s)	6, 313, 754
HpyAV	CCTTC	5 cut(s)	46, 74, 238, 566, 597
HpyCH4III	ACNGT	2 cut(s)	71, 85
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 458, 613
HpyF3I	CTNAG	2 cut(s)	583, 831
Hsp92II	CATG	8 cut(s)	325, 368, 375, 416, 456, 593, 647, 766
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	428
LmnI	GCTCC	2 cut(s)	297, 664
Lsp1109I	GCAGC	4 cut(s)	412, 643, 665, 822
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	430
MboI	GATC	1 cut(s)	428
MboII	GAAGA	2 cut(s)	513, 717
MfeI	CAATTG	3 cut(s)	380, 528, 689
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	7 cut(s)	124, 183, 380, 394, 528, 620, 689
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	3 cut(s)	121, 366, 406
Mph1103I	ATGCAT	2 cut(s)	366, 414
MroI	TCCGGA	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	3 cut(s)	32, 743, 776
MslI	CAYNNNNRTG	2 cut(s)	363, 594
MspA1I	CMGCKG	2 cut(s)	656, 835
MspI	CCGG	2 cut(s)	174, 509
MspR9I	CCNGG	4 cut(s)	175, 405, 699, 737
MunI	CAATTG	3 cut(s)	380, 528, 689
MvaI	CCWGG	3 cut(s)	405, 699, 737
MwoI	GCNNNNNNNGC	3 cut(s)	409, 458, 613
NciI	CCSGG	1 cut(s)	175
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	1 cut(s)	428
NlaIII	CATG	8 cut(s)	325, 368, 375, 416, 456, 593, 647, 766
NlaIV	GGNNCC	2 cut(s)	299, 577
NsiI	ATGCAT	2 cut(s)	366, 414
NspI	RCATGY	5 cut(s)	368, 375, 416, 456, 593
PaeI	GCATGC	2 cut(s)	368, 416
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	1 cut(s)	715
PkrI	GCNGC	5 cut(s)	80, 402, 655, 658, 837
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PsiI	TTATAA	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	403, 697, 735
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	3 cut(s)	403, 697, 735
PspN4I	GGNNCC	2 cut(s)	299, 577
PspPI	GGNCC	1 cut(s)	473
PstI	CTGCAG	1 cut(s)	553
PvuII	CAGCTG	2 cut(s)	656, 835
RseI	CAYNNNNRTG	2 cut(s)	363, 594
SaqAI	TTAA	3 cut(s)	32, 743, 776
SatI	GCNGC	5 cut(s)	79, 401, 654, 657, 836
Sau3AI	GATC	1 cut(s)	428
Sau96I	GGNCC	1 cut(s)	473
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	4 cut(s)	175, 405, 699, 737
SduI	GDGCHC	1 cut(s)	302
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	2 cut(s)	363, 594
SphI	GCATGC	2 cut(s)	368, 416
Sse9I	AATT	7 cut(s)	124, 183, 380, 394, 528, 620, 689
SsiI	CCGC	4 cut(s)	76, 79, 153, 671
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	4 cut(s)	173, 403, 697, 735
TaaI	ACNGT	2 cut(s)	71, 85
TaqI	TCGA	3 cut(s)	326, 484, 823
TasI	AATT	7 cut(s)	124, 183, 380, 394, 528, 620, 689
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	3 cut(s)	32, 743, 776
Tru9I	TTAA	3 cut(s)	32, 743, 776
TscAI	CASTG	2 cut(s)	495, 591
TseI	GCWGC	4 cut(s)	400, 653, 656, 835
TspDTI	ATGAA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	495, 591
XapI	RAATTY	3 cut(s)	183, 394, 620
XceI	RCATGY	5 cut(s)	368, 375, 416, 456, 593
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	1 cut(s)	608
Zsp2I	ATGCAT	2 cut(s)	366, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.