Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008340

Physical Location & Seq

Genomic Coordinates Reverse (-)

59124570 .. 59126892

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTATAATCTATTATTGCCATCACCGAGAGCTATCGCTATAGCCCGCATAGCGTACGGTTGCGTACATACTACGCCCTCTAGAACAACCCACCTCTTAACCTTCGCCCCTACTCGCTCTTTCTCTCACCTTCACCGTCTCCGCCGCACAGTCTCACTCCTCCGACCACCCACTCTCTCCTCCTGTCCTAATTTCCTCACGGGGAACTCTCACTTCTGCCGAATGGCGTGGCTCTTGTCCGGGCGTGGAATTCGTGATAGCAAGGCAATGGTGGAGGGTTTGCAAGGTTATGGAGTGATAAGTTCCAAGAAGGTTGCTGAAGTGATGGGGACTATTGATAGGGCTTTGTTTGTGCCTGATGGGACCCCAGCTTATGTTGACTCCCCCATGTCGATTGGTTATAATGCCACCATTTCTGCACCACATATGCATGCAACATGCCTGCAATTGTTGGAAAAGAATTTGCAGCCTGGTATGCATGCTTTGGATGTTGGATCAGGGACGGGATATTTGACGGCATGTTTTGCATTGATGGTTGGGCCAAAAGGTCGAGCAGTGGGTATAGAACACATTCCGGAGTTGGCCTCTTCCTCCATTGAGAATATTCAAAAAAGTGCAGTAGCACCATTACTGAAAGAAGGTTCCCTCTCAGTGCATGTCGGTGATGGAAGGCTAGGTTGGCCTGAATTTGCACCTTATGATGCTATTCATGTTGGGGCAGCTGCTCCCGAAATACCGCAACCACTTATCGACCAATTGAAGCCTGGAGGAAGAATGGTGATTCCTGTGGGAAATCTATACCAGGATTTAAAGGTTGTGGACAAGAACATGGATGGTTCTCTAAGTATCAGGACTGAAACTTCAGTTCGTTATGTTCCACTTACAAGTCGAGAAGCTCAGCTGCGAGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCMT

Protein Analysis

305

Amino Acids

32.82

Weight (kDa)

9.22

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCMT	PF01135	87 - 298	3.8e-84	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
Methyltransf_31	PF13847	156 - 225	5.9e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008340)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48330 AT3G48330 AT3G48330 AT3G48330 AT5G50240 AT5G50240
fragaria_vesca	FvH4_5g06670 FvH4_5g06670
malus_domestica	MD06G1161900.v1.1 MD14G1167700.v1.1
prunus_persica	Prupe.5G162200_v2.0.a1
pyrus_communis	pycom06g14470
rosa_chinensis	RchiOBHm_Chr7g0191991
rosa_laevigata	RLG00000004411
rosa_multiflora	Rmu_ssc0000421.1_g000031
rosa_roxburghii	Rroxscaffold_3G00263380
rosa_rugosa	Rorug06G0512100 Rorug06G0512200
rosa_samantha	Rh7AG122500 Rh7BG124100 Rh7CG126800 Rh7DG125600
rosa_wichuraiana	Rw7G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	4 cut(s)	46, 142, 145, 737
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	249, 460, 686
AcuI	CTGAAG	2 cut(s)	339, 846
AfaI	GTAC	2 cut(s)	56, 66
AgsI	TTSAA	2 cut(s)	608, 760
AjnI	CCWGG	3 cut(s)	469, 763, 801
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	5 cut(s)	32, 371, 722, 896, 901
AluI	AGCT	5 cut(s)	32, 371, 722, 896, 901
Alw26I	GTCTC	2 cut(s)	143, 157
AlwI	GGATC	1 cut(s)	502
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	3 cut(s)	539, 582, 680
ApeKI	GCWGC	4 cut(s)	466, 719, 722, 901
ApoI	RAATTY	3 cut(s)	249, 460, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
Asp700I	GAANNNNTTC	1 cut(s)	570
AspS9I	GGNCC	2 cut(s)	363, 539
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	5 cut(s)	15, 119, 125, 674, 790
AvaII	GGWCC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	478, 709, 731, 888
BccI	CCATC	6 cut(s)	28, 319, 353, 526, 659, 827
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	3 cut(s)	471, 765, 803
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	143, 157
BfaI	CTAG	2 cut(s)	81, 674
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	5 cut(s)	145, 467, 720, 723, 902
BlpI	GCTNAGC	1 cut(s)	897
BlsI	GCNGC	5 cut(s)	146, 468, 721, 724, 903
Bme1390I	CCNGG	4 cut(s)	241, 471, 765, 803
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	363, 539
BmiI	GGNNCC	3 cut(s)	364, 365, 643
BmrFI	CCNGG	4 cut(s)	241, 471, 765, 803
BmsI	GCATC	1 cut(s)	691
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	1 cut(s)	786
Bpu1102I	GCTNAGC	1 cut(s)	897
BpuMI	CCSGG	1 cut(s)	241
BsaWI	WCCGGW	1 cut(s)	574
Bse3DI	GCAATG	1 cut(s)	273
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	3 cut(s)	471, 765, 803
BseGI	GGATG	2 cut(s)	493, 838
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	663, 911
BseRI	GAGGAG	2 cut(s)	149, 169
BseXI	GCAGC	4 cut(s)	478, 709, 731, 888
BseYI	CCCAGC	1 cut(s)	367
BsgI	GTGCAG	2 cut(s)	402, 636
BshFI	GGCC	3 cut(s)	541, 584, 682
BsiSI	CCGG	2 cut(s)	240, 575
BsiWI	CGTACG	1 cut(s)	54
BslFI	GGGAC	3 cut(s)	343, 376, 514
BsmAI	GTCTC	2 cut(s)	143, 157
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	3 cut(s)	343, 376, 514
BsnI	GGCC	3 cut(s)	541, 584, 682
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	1 cut(s)	494
Bsp1720I	GCTNAGC	1 cut(s)	897
BspACI	CCGC	4 cut(s)	46, 142, 145, 737
BspANI	GGCC	3 cut(s)	541, 584, 682
BspCNI	CTCAG	2 cut(s)	662, 910
BspEI	TCCGGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	364, 365, 643
BspPI	GGATC	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	273
BssMI	GATC	1 cut(s)	494
Bst2UI	CCWGG	3 cut(s)	471, 765, 803
Bst4CI	ACNGT	3 cut(s)	59, 137, 151
Bst6I	CTCTTC	1 cut(s)	592
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	46, 432, 443, 480
BstDEI	CTNAG	3 cut(s)	649, 842, 897
BstF5I	GGATG	2 cut(s)	493, 838
BstKTI	GATC	1 cut(s)	497
BstMAI	GTCTC	2 cut(s)	143, 157
BstMBI	GATC	1 cut(s)	494
BstMWI	GCNNNNNNNGC	4 cut(s)	50, 475, 524, 679
BstNI	CCWGG	3 cut(s)	471, 765, 803
BstNSI	RCATGY	5 cut(s)	434, 441, 482, 522, 659
BstSCI	CCNGG	4 cut(s)	239, 469, 763, 801
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	4 cut(s)	478, 709, 731, 888
BsuRI	GGCC	3 cut(s)	541, 584, 682
BtsCI	GGATG	2 cut(s)	493, 838
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	561, 657
Cac8I	GCNNGC	4 cut(s)	46, 432, 443, 480
Cfr13I	GGNCC	2 cut(s)	363, 539
Csp6I	GTAC	2 cut(s)	55, 65
CviAII	CATG	8 cut(s)	388, 431, 438, 479, 519, 656, 710, 829
CviQI	GTAC	2 cut(s)	55, 65
DdeI	CTNAG	3 cut(s)	649, 842, 897
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
DraI	TTTAAA	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	592
EarI	CTCTTC	1 cut(s)	592
EciI	GGCGGA	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	2 cut(s)	339, 846
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	3 cut(s)	469, 763, 801
EcoT22I	ATGCAT	2 cut(s)	432, 480
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	8 cut(s)	391, 434, 441, 482, 522, 659, 713, 832
FaqI	GGGAC	3 cut(s)	343, 376, 514
FatI	CATG	8 cut(s)	387, 430, 437, 478, 518, 655, 709, 828
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	426
Fnu4HI	GCNGC	5 cut(s)	145, 467, 720, 723, 902
FokI	GGATG	2 cut(s)	500, 845
Fsp4HI	GCNGC	5 cut(s)	145, 467, 720, 723, 902
FspBI	CTAG	2 cut(s)	81, 674
GluI	GCNGC	5 cut(s)	145, 467, 720, 723, 902
GsaI	CCCAGC	1 cut(s)	371
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	541, 584, 682
HapII	CCGG	2 cut(s)	240, 575
Hin1II	CATG	8 cut(s)	391, 434, 441, 482, 522, 659, 713, 832
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	2 cut(s)	380, 781
HpaII	CCGG	2 cut(s)	240, 575
HphI	GGTGA	5 cut(s)	15, 119, 125, 674, 790
Hpy166II	GTNNAC	2 cut(s)	379, 820
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	6 cut(s)	81, 254, 575, 728, 850, 890
Hpy8I	GTNNAC	2 cut(s)	379, 820
HpyAV	CCTTC	5 cut(s)	112, 140, 304, 632, 663
HpyCH4III	ACNGT	3 cut(s)	59, 137, 151
HpyF10VI	GCNNNNNNNGC	4 cut(s)	50, 475, 524, 679
HpyF3I	CTNAG	3 cut(s)	649, 842, 897
Hsp92II	CATG	8 cut(s)	391, 434, 441, 482, 522, 659, 713, 832
KflI	GGGWCCC	1 cut(s)	363
Kpn2I	TCCGGA	1 cut(s)	574
Kzo9I	GATC	1 cut(s)	494
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	4 cut(s)	478, 709, 731, 888
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	2 cut(s)	81, 674
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	2 cut(s)	579, 783
MfeI	CAATTG	2 cut(s)	446, 755
MluCI	AATT	6 cut(s)	190, 249, 446, 460, 686, 755
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	3 cut(s)	187, 432, 472
Mph1103I	ATGCAT	2 cut(s)	432, 480
MroI	TCCGGA	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	570
MseI	TTAA	2 cut(s)	98, 809
MslI	CAYNNNNRTG	2 cut(s)	429, 660
MspA1I	CMGCKG	2 cut(s)	722, 901
MspI	CCGG	2 cut(s)	240, 575
MspR9I	CCNGG	4 cut(s)	241, 471, 765, 803
MunI	CAATTG	2 cut(s)	446, 755
MvaI	CCWGG	3 cut(s)	471, 765, 803
MwoI	GCNNNNNNNGC	4 cut(s)	50, 475, 524, 679
NciI	CCSGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	8 cut(s)	391, 434, 441, 482, 522, 659, 713, 832
NlaIV	GGNNCC	3 cut(s)	364, 365, 643
NsiI	ATGCAT	2 cut(s)	432, 480
NspI	RCATGY	5 cut(s)	434, 441, 482, 522, 659
PaeI	GCATGC	2 cut(s)	434, 482
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	781
Pfl23II	CGTACG	1 cut(s)	54
PkrI	GCNGC	5 cut(s)	146, 468, 721, 724, 903
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	469, 763, 801
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	3 cut(s)	469, 763, 801
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	364, 365, 643
PspPI	GGNCC	2 cut(s)	363, 539
PspPPI	RGGWCCY	1 cut(s)	363
PvuII	CAGCTG	2 cut(s)	722, 901
RsaI	GTAC	2 cut(s)	56, 66
RsaNI	GTAC	2 cut(s)	55, 65
RseI	CAYNNNNRTG	2 cut(s)	429, 660
SaqAI	TTAA	2 cut(s)	98, 809
SatI	GCNGC	5 cut(s)	145, 467, 720, 723, 902
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	2 cut(s)	363, 539
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	4 cut(s)	241, 471, 765, 803
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	429, 660
SphI	GCATGC	2 cut(s)	434, 482
Sse9I	AATT	6 cut(s)	190, 249, 446, 460, 686, 755
SsiI	CCGC	4 cut(s)	46, 142, 145, 737
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	81, 674
StyD4I	CCNGG	4 cut(s)	239, 469, 763, 801
TaaI	ACNGT	3 cut(s)	59, 137, 151
TaqI	TCGA	4 cut(s)	392, 550, 750, 889
TasI	AATT	6 cut(s)	190, 249, 446, 460, 686, 755
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	2 cut(s)	98, 809
Tru9I	TTAA	2 cut(s)	98, 809
TscAI	CASTG	2 cut(s)	561, 657
TseI	GCWGC	4 cut(s)	466, 719, 722, 901
TspDTI	ATGAA	1 cut(s)	698
TspRI	CASTG	2 cut(s)	561, 657
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	3 cut(s)	249, 460, 686
XbaI	TCTAGA	1 cut(s)	80
XceI	RCATGY	5 cut(s)	434, 441, 482, 522, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	761
XmnI	GAANNNNTTC	1 cut(s)	570
XspI	CTAG	2 cut(s)	81, 674
Zsp2I	ATGCAT	2 cut(s)	432, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.