Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006761

Physical Location & Seq

Genomic Coordinates Reverse (-)

18008593 .. 18010018

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGATACCAACAACCAGCAACCACCTCCCTCCGCCGCCGGAATCCCTCCTCCACCACCTGGAACCACCATCTCCGCCGCAGGAGGAGGAGCTTCTTACCACCACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCAACGCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGATAAAAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACTGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCAGTCCTCGGTGGTGGAATGGTGGTGGCTCCTACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGACAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAATGGTGTTTATGTCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTTTGGCAGACTTCGACGGGGACGGGAGATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGGTCAAGGGAATCTCGACGGCCAAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0005829 GO:0006109 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010675 GO:0010677 GO:0016602 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045912 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090575 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000306 GO:2000904 GO:2000905 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

234

Amino Acids

25.33

Weight (kDa)

5.03

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	57 - 128	3.5e-17	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	65 - 128	1.8e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48590
fragaria_vesca	FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391
malus_domestica	MD06G1141200.v1.1 MD14G1156400.v1.1
prunus_persica	Prupe.5G150400_v2.0.a1
pyrus_communis	pycom06g13120
rosa_chinensis	RchiOBHm_Chr7g0190051
rosa_laevigata	RLG00000004568
rosa_multiflora	Rmu_sc0004886.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264920
rosa_rugosa	Rorug06G0502000
rosa_samantha	Rh7AG107500 Rh7BG109800 Rh7CG112100 Rh7DG110500
rosa_wichuraiana	Rw7G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccBSI	CCGCTC	1 cut(s)	492
AccII	CGCG	2 cut(s)	278, 488
AciI	CCGC	9 cut(s)	33, 36, 75, 78, 255, 450, 486, 492, 512
AclWI	GGATC	2 cut(s)	563, 576
AcoI	YGGCCR	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	3 cut(s)	59, 518, 681
AgsI	TTSAA	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	58, 535
AluBI	AGCT	9 cut(s)	92, 130, 196, 206, 284, 292, 307, 530, 563
AluI	AGCT	9 cut(s)	92, 130, 196, 206, 284, 292, 307, 530, 563
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	3 cut(s)	550, 603, 655
AlwI	GGATC	2 cut(s)	563, 576
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	694
ApeKI	GCWGC	2 cut(s)	374, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	438, 470
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	144, 533
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	144, 533
BamHI	GGATCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	361, 364
BccI	CCATC	3 cut(s)	77, 198, 511
BcgI	CGANNNNNNTGC	4 cut(s)	356, 390, 478, 512
BciT130I	CCWGG	2 cut(s)	60, 537
BcoDI	GTCTC	3 cut(s)	550, 603, 655
BfaI	CTAG	4 cut(s)	203, 207, 387, 426
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	6 cut(s)	36, 78, 375, 378, 450, 493
BlsI	GCNGC	6 cut(s)	37, 79, 376, 379, 451, 494
Bme1390I	CCNGG	2 cut(s)	60, 537
Bme18I	GGWCC	2 cut(s)	144, 533
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	144, 533
BmiI	GGNNCC	3 cut(s)	64, 480, 570
BmrFI	CCNGG	2 cut(s)	60, 537
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	550
BsaJI	CCNNGG	2 cut(s)	457, 697
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 633, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 518, 681
BseBI	CCWGG	2 cut(s)	60, 537
BseDI	CCNNGG	2 cut(s)	457, 697
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	59, 518, 681
BseMII	CTCAG	2 cut(s)	324, 614
BseRI	GAGGAG	4 cut(s)	39, 99, 102, 350
BseXI	GCAGC	2 cut(s)	361, 364
Bsh1236I	CGCG	2 cut(s)	278, 488
BshFI	GGCC	1 cut(s)	696
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	39, 675
BsiWI	CGTACG	1 cut(s)	350
BslFI	GGGAC	2 cut(s)	534, 649
BslI	CCNNNNNNNGG	3 cut(s)	59, 518, 681
BsmAI	GTCTC	3 cut(s)	550, 603, 655
BsmBI	CGTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	534, 649
BsnI	GGCC	1 cut(s)	696
Bso31I	GGTCTC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
Bsp68I	TCGCGA	1 cut(s)	278
BspACI	CCGC	9 cut(s)	33, 36, 75, 78, 255, 450, 486, 492, 512
BspANI	GGCC	1 cut(s)	696
BspCNI	CTCAG	2 cut(s)	325, 613
BspFNI	CGCG	2 cut(s)	278, 488
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	64, 480, 570
BspPI	GGATC	2 cut(s)	563, 576
BspTNI	GGTCTC	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	492
BssECI	CCNNGG	2 cut(s)	457, 697
BssMI	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
BssT1I	CCWWGG	1 cut(s)	697
Bst2UI	CCWGG	2 cut(s)	60, 537
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	490, 497
BstDEI	CTNAG	2 cut(s)	333, 600
BstF5I	GGATG	1 cut(s)	549
BstFNI	CGCG	2 cut(s)	278, 488
BstKTI	GATC	6 cut(s)	165, 222, 252, 315, 320, 571
BstMAI	GTCTC	3 cut(s)	550, 603, 655
BstMBI	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	485
BstNI	CCWGG	2 cut(s)	60, 537
BstSCI	CCNGG	2 cut(s)	58, 535
BstUI	CGCG	2 cut(s)	278, 488
BstV1I	GCAGC	2 cut(s)	361, 364
BstX2I	RGATCY	2 cut(s)	317, 568
BstYI	RGATCY	2 cut(s)	317, 568
BsuRI	GGCC	1 cut(s)	696
BtsCI	GGATG	1 cut(s)	549
BtuMI	TCGCGA	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	490, 497
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	144, 533
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	333, 600
DpnI	GATC	6 cut(s)	164, 221, 251, 314, 319, 570
DpnII	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
EaeI	YGGCCR	1 cut(s)	694
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EciI	GGCGGA	3 cut(s)	22, 64, 501
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	550
Eco32I	GATATC	2 cut(s)	370, 397
Eco47I	GGWCC	2 cut(s)	144, 533
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	58, 535
EcoRV	GATATC	2 cut(s)	370, 397
EcoT14I	CCWWGG	1 cut(s)	697
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	697
Esp3I	CGTCTC	1 cut(s)	603
FaeI	CATG	1 cut(s)	226
FaiI	YATR	5 cut(s)	224, 248, 566, 585, 657
FaqI	GGGAC	2 cut(s)	534, 649
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	6 cut(s)	36, 78, 375, 378, 450, 493
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	6 cut(s)	36, 78, 375, 378, 450, 493
FspBI	CTAG	4 cut(s)	203, 207, 387, 426
GluI	GCNGC	6 cut(s)	36, 78, 375, 378, 450, 493
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	696
HapII	CCGG	2 cut(s)	39, 675
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	3 cut(s)	42, 268, 685
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	39, 675
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	3 cut(s)	317, 360, 573
Hpy188III	TCNNGA	6 cut(s)	142, 223, 277, 302, 310, 689
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	351, 634, 695
HpyAV	CCTTC	1 cut(s)	116
HpyCH4IV	ACGT	1 cut(s)	346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	485
HpyF3I	CTNAG	2 cut(s)	333, 600
HpySE526I	ACGT	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	226
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
LmnI	GCTCC	3 cut(s)	89, 135, 484
Lsp1109I	GCAGC	2 cut(s)	361, 364
MaeI	CTAG	4 cut(s)	203, 207, 387, 426
MaeII	ACGT	1 cut(s)	346
MalI	GATC	6 cut(s)	164, 221, 251, 314, 319, 570
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
MboII	GAAGA	3 cut(s)	248, 265, 391
MflI	RGATCY	2 cut(s)	317, 568
MhlI	GDGCHC	1 cut(s)	309
MmeI	TCCRAC	2 cut(s)	136, 157
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	174, 438, 703
MspA1I	CMGCKG	1 cut(s)	530
MspI	CCGG	2 cut(s)	39, 675
MspR9I	CCNGG	2 cut(s)	60, 537
MvaI	CCWGG	2 cut(s)	60, 537
MvnI	CGCG	2 cut(s)	278, 488
MwoI	GCNNNNNNNGC	1 cut(s)	485
NdeII	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	3 cut(s)	64, 480, 570
NruI	TCGCGA	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	302
PagI	TCATGA	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	42, 268, 685
Pfl23II	CGTACG	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	6 cut(s)	37, 79, 376, 379, 451, 494
Psp124BI	GAGCTC	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	58, 535
PspGI	CCWGG	2 cut(s)	58, 535
PspLI	CGTACG	1 cut(s)	350
PspN4I	GGNNCC	3 cut(s)	64, 480, 570
PspPI	GGNCC	2 cut(s)	144, 533
PsuI	RGATCY	2 cut(s)	317, 568
PvuII	CAGCTG	1 cut(s)	530
RruI	TCGCGA	1 cut(s)	278
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	174, 438, 703
SatI	GCNGC	6 cut(s)	36, 78, 375, 378, 450, 493
Sau3AI	GATC	6 cut(s)	162, 219, 249, 312, 317, 568
Sau96I	GGNCC	2 cut(s)	144, 533
ScrFI	CCNGG	2 cut(s)	60, 537
SduI	GDGCHC	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	302
SinI	GGWCC	2 cut(s)	144, 533
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
SsiI	CCGC	9 cut(s)	33, 36, 75, 78, 255, 450, 486, 492, 512
SspMI	CTAG	4 cut(s)	203, 207, 387, 426
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	58, 535
StyI	CCWWGG	1 cut(s)	697
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	5 cut(s)	165, 303, 402, 629, 690
TauI	GCSGC	4 cut(s)	38, 80, 452, 495
TfiI	GAWTC	3 cut(s)	42, 268, 685
Tru1I	TTAA	3 cut(s)	174, 438, 703
Tru9I	TTAA	3 cut(s)	174, 438, 703
TseI	GCWGC	2 cut(s)	374, 377
TspDTI	ATGAA	3 cut(s)	239, 249, 286
TspGWI	ACGGA	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	144, 533
XhoI	CTCGAG	1 cut(s)	302
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	203, 207, 387, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.