Nuclear transcription factor Y subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48590 |
| fragaria_vesca | FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 |
| malus_domestica | MD06G1141200.v1.1 MD14G1156400.v1.1 |
| prunus_persica | Prupe.5G150400_v2.0.a1 |
| pyrus_communis | pycom06g13120 |
| rosa_chinensis | RchiOBHm_Chr7g0190051 |
| rosa_laevigata | RLG00000004568 |
| rosa_multiflora | Rmu_sc0004886.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00264920 |
| rosa_rugosa | Rorug06G0502000 |
| rosa_samantha | Rh7AG107500 Rh7BG109800 Rh7CG112100 Rh7DG110500 |
| rosa_wichuraiana | Rw7G009280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 272 |
| AatII | GACGTC | 1 cut(s) | 276 |
| Acc36I | ACCTGC | 1 cut(s) | 193 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AccBSI | CCGCTC | 1 cut(s) | 351 |
| AccII | CGCG | 1 cut(s) | 119 |
| AcoI | YGGCCR | 4 cut(s) | 553, 561, 703, 721 |
| AcuI | CTGAAG | 1 cut(s) | 149 |
| AcyI | GRCGYC | 2 cut(s) | 122, 273 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 98, 145, 190, 367, 420, 525, 551 |
| AgsI | TTSAA | 1 cut(s) | 217 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 676 |
| AjnI | CCWGG | 5 cut(s) | 96, 144, 353, 419, 705 |
| AluBI | AGCT | 4 cut(s) | 163, 229, 325, 340 |
| AluI | AGCT | 4 cut(s) | 163, 229, 325, 340 |
| Alw21I | GWGCWC | 2 cut(s) | 327, 342 |
| Ama87I | CYCGRG | 3 cut(s) | 335, 459, 610 |
| ApaI | GGGCCC | 1 cut(s) | 104 |
| ApeKI | GCWGC | 3 cut(s) | 154, 157, 160 |
| AspLEI | GCGC | 3 cut(s) | 124, 384, 571 |
| AspS9I | GGNCC | 9 cut(s) | 100, 101, 238, 295, 423, 513, 529, 604, 678 |
| AsuC2I | CCSGG | 3 cut(s) | 460, 461, 573 |
| AsuHPI | GGTGA | 1 cut(s) | 334 |
| AvaI | CYCGRG | 3 cut(s) | 335, 459, 610 |
| AvaII | GGWCC | 4 cut(s) | 423, 529, 604, 678 |
| BaeGI | GKGCMC | 1 cut(s) | 104 |
| BalI | TGGCCA | 3 cut(s) | 555, 705, 723 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BanII | GRGCYC | 3 cut(s) | 104, 327, 342 |
| Bbv12I | GWGCWC | 2 cut(s) | 327, 342 |
| BbvI | GCAGC | 3 cut(s) | 166, 169, 172 |
| BccI | CCATC | 4 cut(s) | 353, 595, 668, 713 |
| BceAI | ACGGC | 5 cut(s) | 91, 112, 395, 616, 678 |
| BciT130I | CCWGG | 5 cut(s) | 98, 146, 355, 421, 707 |
| BcnI | CCSGG | 3 cut(s) | 460, 461, 573 |
| BfoI | RGCGCY | 1 cut(s) | 125 |
| BfuAI | ACCTGC | 1 cut(s) | 193 |
| BlpI | GCTNAGC | 1 cut(s) | 150 |
| Bme1390I | CCNGG | 8 cut(s) | 98, 146, 355, 421, 460, 461, 573, 707 |
| Bme18I | GGWCC | 4 cut(s) | 423, 529, 604, 678 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 676 |
| BmeT110I | CYCGRG | 3 cut(s) | 335, 459, 610 |
| BmgT120I | GGNCC | 9 cut(s) | 100, 101, 238, 295, 423, 513, 529, 604, 678 |
| BmiI | GGNNCC | 9 cut(s) | 102, 123, 297, 359, 514, 530, 531, 606, 679 |
| BmrFI | CCNGG | 8 cut(s) | 98, 146, 355, 421, 460, 461, 573, 707 |
| BmrI | ACTGGG | 1 cut(s) | 67 |
| BmsI | GCATC | 1 cut(s) | 252 |
| BmuI | ACTGGG | 1 cut(s) | 67 |
| BpmI | CTGGAG | 2 cut(s) | 128, 374 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 150 |
| BpuMI | CCSGG | 3 cut(s) | 460, 461, 573 |
| BsaHI | GRCGYC | 2 cut(s) | 122, 273 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 73, 103, 483, 513 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 98, 145, 190, 367, 420, 525, 551 |
| Bse118I | RCCGGY | 4 cut(s) | 482, 559, 563, 595 |
| Bse1I | ACTGG | 2 cut(s) | 73, 522 |
| Bse3DI | GCAATG | 1 cut(s) | 402 |
| BseBI | CCWGG | 5 cut(s) | 98, 146, 355, 421, 707 |
| BseGI | GGATG | 5 cut(s) | 285, 330, 345, 469, 585 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 98, 145, 190, 367, 420, 525, 551 |
| BseMI | GCAATG | 1 cut(s) | 402 |
| BseMII | CTCAG | 2 cut(s) | 164, 300 |
| BseNI | ACTGG | 2 cut(s) | 73, 522 |
| BseRI | GAGGAG | 2 cut(s) | 131, 383 |
| BseSI | GKGCMC | 1 cut(s) | 104 |
| BseX3I | CGGCCG | 1 cut(s) | 561 |
| BseXI | GCAGC | 3 cut(s) | 166, 169, 172 |
| BseYI | CCCAGC | 2 cut(s) | 42, 624 |
| Bsh1236I | CGCG | 1 cut(s) | 119 |
| Bsh1285I | CGRYCG | 1 cut(s) | 564 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiEI | CGRYCG | 1 cut(s) | 564 |
| BsiHKAI | GWGCWC | 2 cut(s) | 327, 342 |
| BsiHKCI | CYCGRG | 3 cut(s) | 335, 459, 610 |
| BsiSI | CCGG | 6 cut(s) | 460, 483, 560, 564, 572, 596 |
| BslFI | GGGAC | 2 cut(s) | 440, 515 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 98, 145, 190, 367, 420, 525, 551 |
| BsmFI | GGGAC | 2 cut(s) | 440, 515 |
| BsoBI | CYCGRG | 3 cut(s) | 335, 459, 610 |
| Bsp120I | GGGCCC | 1 cut(s) | 100 |
| Bsp1286I | GDGCHC | 3 cut(s) | 104, 327, 342 |
| Bsp143I | GATC | 4 cut(s) | 195, 252, 282, 468 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 150 |
| BspCNI | CTCAG | 2 cut(s) | 163, 299 |
| BspFNI | CGCG | 1 cut(s) | 119 |
| BspHI | TCATGA | 1 cut(s) | 255 |
| BspLI | GGNNCC | 9 cut(s) | 102, 123, 297, 359, 514, 530, 531, 606, 679 |
| BspMI | ACCTGC | 1 cut(s) | 193 |
| BspQI | GCTCTTC | 1 cut(s) | 332 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrBI | CCGCTC | 1 cut(s) | 351 |
| BsrDI | GCAATG | 1 cut(s) | 402 |
| BsrFI | RCCGGY | 4 cut(s) | 482, 559, 563, 595 |
| BsrI | ACTGG | 2 cut(s) | 73, 522 |
| BssAI | RCCGGY | 4 cut(s) | 482, 559, 563, 595 |
| BssMI | GATC | 4 cut(s) | 195, 252, 282, 468 |
| BssNI | GRCGYC | 2 cut(s) | 122, 273 |
| BssT1I | CCWWGG | 2 cut(s) | 234, 312 |
| Bst2UI | CCWGG | 5 cut(s) | 98, 146, 355, 421, 707 |
| Bst6I | CTCTTC | 1 cut(s) | 332 |
| BstACI | GRCGYC | 2 cut(s) | 122, 273 |
| BstC8I | GCNNGC | 9 cut(s) | 104, 241, 319, 323, 484, 557, 561, 597, 639 |
| BstDEI | CTNAG | 2 cut(s) | 150, 286 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 143 |
| BstF5I | GGATG | 5 cut(s) | 285, 330, 345, 469, 585 |
| BstFNI | CGCG | 1 cut(s) | 119 |
| BstH2I | RGCGCY | 1 cut(s) | 125 |
| BstHHI | GCGC | 3 cut(s) | 124, 384, 571 |
| BstKTI | GATC | 4 cut(s) | 198, 255, 285, 471 |
| BstMBI | GATC | 4 cut(s) | 195, 252, 282, 468 |
| BstMCI | CGRYCG | 1 cut(s) | 564 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 29, 38, 77, 160, 634, 643 |
| BstNI | CCWGG | 5 cut(s) | 98, 146, 355, 421, 707 |
| BstSCI | CCNGG | 8 cut(s) | 96, 144, 353, 419, 458, 459, 571, 705 |
| BstSLI | GKGCMC | 1 cut(s) | 104 |
| BstUI | CGCG | 1 cut(s) | 119 |
| BstV1I | GCAGC | 3 cut(s) | 166, 169, 172 |
| BstZI | CGGCCG | 1 cut(s) | 561 |
| BtgZI | GCGATG | 1 cut(s) | 614 |
| BtsCI | GGATG | 5 cut(s) | 285, 330, 345, 469, 585 |
| BtsI | GCAGTG | 1 cut(s) | 706 |
| BtsIMutI | CAGTG | 2 cut(s) | 529, 706 |
| BveI | ACCTGC | 1 cut(s) | 193 |
| Cac8I | GCNNGC | 9 cut(s) | 104, 241, 319, 323, 484, 557, 561, 597, 639 |
| CciI | TCATGA | 1 cut(s) | 255 |
| CfoI | GCGC | 3 cut(s) | 124, 384, 571 |
| Cfr10I | RCCGGY | 4 cut(s) | 482, 559, 563, 595 |
| Cfr13I | GGNCC | 9 cut(s) | 100, 101, 238, 295, 423, 513, 529, 604, 678 |
| Cfr9I | CCCGGG | 1 cut(s) | 459 |
| CviAII | CATG | 2 cut(s) | 256, 505 |
| DdeI | CTNAG | 2 cut(s) | 150, 286 |
| DinI | GGCGCC | 1 cut(s) | 123 |
| DpnI | GATC | 4 cut(s) | 197, 254, 284, 470 |
| DpnII | GATC | 4 cut(s) | 195, 252, 282, 468 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 272 |
| DriI | GACNNNNNGTC | 1 cut(s) | 676 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 272 |
| EaeI | YGGCCR | 4 cut(s) | 553, 561, 703, 721 |
| EagI | CGGCCG | 1 cut(s) | 561 |
| Eam1104I | CTCTTC | 1 cut(s) | 332 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 676 |
| EarI | CTCTTC | 1 cut(s) | 332 |
| EciI | GGCGGA | 2 cut(s) | 67, 683 |
| Ecl136II | GAGCTC | 2 cut(s) | 325, 340 |
| EclXI | CGGCCG | 1 cut(s) | 561 |
| Eco130I | CCWWGG | 2 cut(s) | 234, 312 |
| Eco147I | AGGCCT | 1 cut(s) | 317 |
| Eco24I | GRGCYC | 3 cut(s) | 104, 327, 342 |
| Eco47I | GGWCC | 4 cut(s) | 423, 529, 604, 678 |
| Eco52I | CGGCCG | 1 cut(s) | 561 |
| Eco53kI | GAGCTC | 2 cut(s) | 325, 340 |
| Eco57I | CTGAAG | 1 cut(s) | 149 |
| Eco88I | CYCGRG | 3 cut(s) | 335, 459, 610 |
| EcoICRI | GAGCTC | 2 cut(s) | 325, 340 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 143 |
| EcoO109I | RGGNCCY | 4 cut(s) | 100, 295, 529, 678 |
| EcoRII | CCWGG | 5 cut(s) | 96, 144, 353, 419, 705 |
| EcoT14I | CCWWGG | 2 cut(s) | 234, 312 |
| EcoT38I | GRGCYC | 3 cut(s) | 104, 327, 342 |
| EgeI | GGCGCC | 1 cut(s) | 123 |
| EheI | GGCGCC | 1 cut(s) | 123 |
| ErhI | CCWWGG | 2 cut(s) | 234, 312 |
| FaeI | CATG | 2 cut(s) | 259, 508 |
| FaiI | YATR | 4 cut(s) | 257, 506, 621, 684 |
| FaqI | GGGAC | 2 cut(s) | 440, 515 |
| FatI | CATG | 2 cut(s) | 255, 504 |
| FauI | CCCGC | 4 cut(s) | 100, 111, 248, 552 |
| FokI | GGATG | 5 cut(s) | 292, 317, 332, 476, 592 |
| FriOI | GRGCYC | 3 cut(s) | 104, 327, 342 |
| FseI | GGCCGGCC | 1 cut(s) | 486 |
| GlaI | GCGC | 3 cut(s) | 123, 383, 570 |
| GsaI | CCCAGC | 2 cut(s) | 46, 628 |
| GsuI | CTGGAG | 2 cut(s) | 128, 374 |
| HaeII | RGCGCY | 1 cut(s) | 125 |
| HapII | CCGG | 6 cut(s) | 460, 483, 560, 564, 572, 596 |
| HhaI | GCGC | 3 cut(s) | 124, 384, 571 |
| Hin1I | GRCGYC | 2 cut(s) | 122, 273 |
| Hin1II | CATG | 2 cut(s) | 259, 508 |
| Hin6I | GCGC | 3 cut(s) | 122, 382, 569 |
| HinP1I | GCGC | 3 cut(s) | 122, 382, 569 |
| HincII | GTYRAC | 1 cut(s) | 208 |
| HindII | GTYRAC | 1 cut(s) | 208 |
| HpaII | CCGG | 6 cut(s) | 460, 483, 560, 564, 572, 596 |
| HphI | GGTGA | 1 cut(s) | 334 |
| Hpy166II | GTNNAC | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 491 |
| Hpy188III | TCNNGA | 7 cut(s) | 175, 217, 247, 256, 277, 391, 716 |
| Hpy8I | GTNNAC | 1 cut(s) | 208 |
| Hpy99I | CGWCG | 5 cut(s) | 119, 269, 449, 503, 637 |
| HpyAV | CCTTC | 1 cut(s) | 253 |
| HpyCH4IV | ACGT | 1 cut(s) | 273 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 29, 38, 77, 160, 634, 643 |
| HpyF3I | CTNAG | 2 cut(s) | 150, 286 |
| HpySE526I | ACGT | 1 cut(s) | 273 |
| Hsp92I | GRCGYC | 2 cut(s) | 122, 273 |
| Hsp92II | CATG | 2 cut(s) | 259, 508 |
| HspAI | GCGC | 3 cut(s) | 122, 382, 569 |
| KasI | GGCGCC | 1 cut(s) | 121 |
| KflI | GGGWCCC | 1 cut(s) | 529 |
| KroI | GCCGGC | 3 cut(s) | 482, 559, 595 |
| KroNI | GCCGGC | 3 cut(s) | 484, 561, 597 |
| Kzo9I | GATC | 4 cut(s) | 195, 252, 282, 468 |
| LguI | GCTCTTC | 1 cut(s) | 332 |
| LmnI | GCTCC | 4 cut(s) | 234, 356, 363, 696 |
| Lsp1109I | GCAGC | 3 cut(s) | 166, 169, 172 |
| LweI | GCATC | 1 cut(s) | 252 |
| MaeII | ACGT | 1 cut(s) | 273 |
| MalI | GATC | 4 cut(s) | 197, 254, 284, 470 |
| MbiI | CCGCTC | 1 cut(s) | 351 |
| MboI | GATC | 4 cut(s) | 195, 252, 282, 468 |
| MboII | GAAGA | 2 cut(s) | 262, 319 |
| MhlI | GDGCHC | 3 cut(s) | 104, 327, 342 |
| MlsI | TGGCCA | 3 cut(s) | 555, 705, 723 |
| MluNI | TGGCCA | 3 cut(s) | 555, 705, 723 |
| Mly113I | GGCGCC | 1 cut(s) | 122 |
| Mox20I | TGGCCA | 3 cut(s) | 555, 705, 723 |
| MroNI | GCCGGC | 3 cut(s) | 482, 559, 595 |
| MscI | TGGCCA | 3 cut(s) | 555, 705, 723 |
| Msp20I | TGGCCA | 3 cut(s) | 555, 705, 723 |
| MspA1I | CMGCKG | 1 cut(s) | 187 |
| MspI | CCGG | 6 cut(s) | 460, 483, 560, 564, 572, 596 |
| MspR9I | CCNGG | 8 cut(s) | 98, 146, 355, 421, 460, 461, 573, 707 |
| MvaI | CCWGG | 5 cut(s) | 98, 146, 355, 421, 707 |
| MvnI | CGCG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 29, 38, 77, 160, 634, 643 |
| NaeI | GCCGGC | 3 cut(s) | 484, 561, 597 |
| NarI | GGCGCC | 1 cut(s) | 122 |
| NciI | CCSGG | 3 cut(s) | 460, 461, 573 |
| NdeII | GATC | 4 cut(s) | 195, 252, 282, 468 |
| NgoMIV | GCCGGC | 3 cut(s) | 482, 559, 595 |
| NlaIII | CATG | 2 cut(s) | 259, 508 |
| NlaIV | GGNNCC | 9 cut(s) | 102, 123, 297, 359, 514, 530, 531, 606, 679 |
| NmeAIII | GCCGAG | 2 cut(s) | 316, 391 |
| PaeR7I | CTCGAG | 1 cut(s) | 335 |
| PagI | TCATGA | 1 cut(s) | 255 |
| PasI | CCCWGGG | 1 cut(s) | 97 |
| PceI | AGGCCT | 1 cut(s) | 317 |
| PciSI | GCTCTTC | 1 cut(s) | 332 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 441, 495 |
| PdiI | GCCGGC | 3 cut(s) | 484, 561, 597 |
| PluTI | GGCGCC | 1 cut(s) | 125 |
| PpuMI | RGGWCCY | 2 cut(s) | 529, 678 |
| Psp124BI | GAGCTC | 2 cut(s) | 327, 342 |
| Psp5II | RGGWCCY | 2 cut(s) | 529, 678 |
| Psp6I | CCWGG | 5 cut(s) | 96, 144, 353, 419, 705 |
| PspFI | CCCAGC | 2 cut(s) | 42, 624 |
| PspGI | CCWGG | 5 cut(s) | 96, 144, 353, 419, 705 |
| PspN4I | GGNNCC | 9 cut(s) | 102, 123, 297, 359, 514, 530, 531, 606, 679 |
| PspOMI | GGGCCC | 1 cut(s) | 100 |
| PspPI | GGNCC | 9 cut(s) | 100, 101, 238, 295, 423, 513, 529, 604, 678 |
| PspPPI | RGGWCCY | 2 cut(s) | 529, 678 |
| PspXI | VCTCGAGB | 1 cut(s) | 335 |
| RigI | GGCCGGCC | 1 cut(s) | 486 |
| SacI | GAGCTC | 2 cut(s) | 327, 342 |
| SapI | GCTCTTC | 1 cut(s) | 332 |
| Sau3AI | GATC | 4 cut(s) | 195, 252, 282, 468 |
| Sau96I | GGNCC | 9 cut(s) | 100, 101, 238, 295, 423, 513, 529, 604, 678 |
| ScrFI | CCNGG | 8 cut(s) | 98, 146, 355, 421, 460, 461, 573, 707 |
| SduI | GDGCHC | 3 cut(s) | 104, 327, 342 |
| SfaNI | GCATC | 1 cut(s) | 252 |
| SfoI | GGCGCC | 1 cut(s) | 123 |
| Sfr274I | CTCGAG | 1 cut(s) | 335 |
| SinI | GGWCC | 4 cut(s) | 423, 529, 604, 678 |
| SlaI | CTCGAG | 1 cut(s) | 335 |
| SmaI | CCCGGG | 1 cut(s) | 461 |
| SmlI | CTYRAG | 1 cut(s) | 335 |
| SmoI | CTYRAG | 1 cut(s) | 335 |
| SseBI | AGGCCT | 1 cut(s) | 317 |
| SspDI | GGCGCC | 1 cut(s) | 121 |
| SstI | GAGCTC | 2 cut(s) | 327, 342 |
| StuI | AGGCCT | 1 cut(s) | 317 |
| StyD4I | CCNGG | 8 cut(s) | 96, 144, 353, 419, 458, 459, 571, 705 |
| StyI | CCWWGG | 2 cut(s) | 234, 312 |
| TaiI | ACGT | 1 cut(s) | 276 |
| TaqI | TCGA | 4 cut(s) | 198, 336, 435, 447 |
| TaqII | GACCGA | 1 cut(s) | 440 |
| TauI | GCSGC | 9 cut(s) | 23, 26, 122, 127, 190, 410, 413, 631, 668 |
| TscAI | CASTG | 2 cut(s) | 529, 706 |
| TseI | GCWGC | 3 cut(s) | 154, 157, 160 |
| TspDTI | ATGAA | 2 cut(s) | 272, 319 |
| TspGWI | ACGGA | 2 cut(s) | 103, 640 |
| TspMI | CCCGGG | 1 cut(s) | 459 |
| TspRI | CASTG | 2 cut(s) | 529, 706 |
| VpaK11BI | GGWCC | 4 cut(s) | 423, 529, 604, 678 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 143 |
| XhoI | CTCGAG | 1 cut(s) | 335 |
| XmaI | CCCGGG | 1 cut(s) | 459 |
| ZraI | GACGTC | 1 cut(s) | 274 |