Rh7BG109800

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
8301061 .. 8303513
2453 bp
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UTR
Exon/CDS
Intron
Rh7BG109800.1

Sequence Viewer

Length: 732 bp
ATGGACAACAACCCCAACGCCGCCGCCACCGCCATTACCGCCCAGCACCAGCACCAGCACCAGCACCAAGCCCAGTCCGCCACCTACCCTCCCGCCCAGGGCCCGCCGTCCTCCGTCGCGGCGCCGCCGTTCCACCACCTCCTCCAGGCTCAGCAGCAGCAGCTTCAGATGTTCTGGAACTACCAGCGGCAGGAGATCGAGCAGGTCAACGACTTCAAGAACCACCAGCTCCCCTTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCAGGATGATCTCAGCCGAGGCCCCCGTCCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAACGGCGCACTCTCCAGAAAAACGACATTGCCGCCGCCATTACCAGGACCGATATTTTCGATTTCCTCGTCGATATTGTCCCCCGGGATGAGATCAAGGACGAGGCCGGCCTCGGAGGTGTCGTCGGCATGGTGGGGGCCACCGCCAGTGGGGTCCCCTACTACTACCCGCCGATTGGCCAGCCGGCCGGTGCGCCGGGAGGGATGATGATTGGGAGGCCGGCGATGGACCCCTCGGGTGTTTATGCCCAGCCGCCGTCGCAGGCGTGGCAGTCCGTGTGGCAGACGGCGGCGGACGATGGGTCCTATGGGAGTGGAGGGAGCAGTGGCCAGGGCAATCTTGATGGCCAGAGGTAA
Functional Annotation

Protein Analysis

243

Amino Acids

26.49

Weight (kDa)

5.71

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 68 - 139 9.9e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 76 - 139 1e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AatII GACGTC 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 351
AccII CGCG 1 cut(s) 119
AcoI YGGCCR 4 cut(s) 553, 561, 703, 721
AcuI CTGAAG 1 cut(s) 149
AcyI GRCGYC 2 cut(s) 122, 273
AfiI CCNNNNNNNGG 7 cut(s) 98, 145, 190, 367, 420, 525, 551
AgsI TTSAA 1 cut(s) 217
AhdI GACNNNNNGTC 1 cut(s) 676
AjnI CCWGG 5 cut(s) 96, 144, 353, 419, 705
AluBI AGCT 4 cut(s) 163, 229, 325, 340
AluI AGCT 4 cut(s) 163, 229, 325, 340
Alw21I GWGCWC 2 cut(s) 327, 342
Ama87I CYCGRG 3 cut(s) 335, 459, 610
ApaI GGGCCC 1 cut(s) 104
ApeKI GCWGC 3 cut(s) 154, 157, 160
AspLEI GCGC 3 cut(s) 124, 384, 571
AspS9I GGNCC 9 cut(s) 100, 101, 238, 295, 423, 513, 529, 604, 678
AsuC2I CCSGG 3 cut(s) 460, 461, 573
AsuHPI GGTGA 1 cut(s) 334
AvaI CYCGRG 3 cut(s) 335, 459, 610
AvaII GGWCC 4 cut(s) 423, 529, 604, 678
BaeGI GKGCMC 1 cut(s) 104
BalI TGGCCA 3 cut(s) 555, 705, 723
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 3 cut(s) 104, 327, 342
Bbv12I GWGCWC 2 cut(s) 327, 342
BbvI GCAGC 3 cut(s) 166, 169, 172
BccI CCATC 4 cut(s) 353, 595, 668, 713
BceAI ACGGC 5 cut(s) 91, 112, 395, 616, 678
BciT130I CCWGG 5 cut(s) 98, 146, 355, 421, 707
BcnI CCSGG 3 cut(s) 460, 461, 573
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 193
BlpI GCTNAGC 1 cut(s) 150
Bme1390I CCNGG 8 cut(s) 98, 146, 355, 421, 460, 461, 573, 707
Bme18I GGWCC 4 cut(s) 423, 529, 604, 678
BmeRI GACNNNNNGTC 1 cut(s) 676
BmeT110I CYCGRG 3 cut(s) 335, 459, 610
BmgT120I GGNCC 9 cut(s) 100, 101, 238, 295, 423, 513, 529, 604, 678
BmiI GGNNCC 9 cut(s) 102, 123, 297, 359, 514, 530, 531, 606, 679
BmrFI CCNGG 8 cut(s) 98, 146, 355, 421, 460, 461, 573, 707
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 252
BmuI ACTGGG 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 128, 374
Bpu1102I GCTNAGC 1 cut(s) 150
BpuMI CCSGG 3 cut(s) 460, 461, 573
BsaHI GRCGYC 2 cut(s) 122, 273
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 483, 513
Bsc4I CCNNNNNNNGG 7 cut(s) 98, 145, 190, 367, 420, 525, 551
Bse118I RCCGGY 4 cut(s) 482, 559, 563, 595
Bse1I ACTGG 2 cut(s) 73, 522
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 5 cut(s) 98, 146, 355, 421, 707
BseGI GGATG 5 cut(s) 285, 330, 345, 469, 585
BseLI CCNNNNNNNGG 7 cut(s) 98, 145, 190, 367, 420, 525, 551
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 2 cut(s) 164, 300
BseNI ACTGG 2 cut(s) 73, 522
BseRI GAGGAG 2 cut(s) 131, 383
BseSI GKGCMC 1 cut(s) 104
BseX3I CGGCCG 1 cut(s) 561
BseXI GCAGC 3 cut(s) 166, 169, 172
BseYI CCCAGC 2 cut(s) 42, 624
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 564
BsiHKAI GWGCWC 2 cut(s) 327, 342
BsiHKCI CYCGRG 3 cut(s) 335, 459, 610
BsiSI CCGG 6 cut(s) 460, 483, 560, 564, 572, 596
BslFI GGGAC 2 cut(s) 440, 515
BslI CCNNNNNNNGG 7 cut(s) 98, 145, 190, 367, 420, 525, 551
BsmFI GGGAC 2 cut(s) 440, 515
BsoBI CYCGRG 3 cut(s) 335, 459, 610
Bsp120I GGGCCC 1 cut(s) 100
Bsp1286I GDGCHC 3 cut(s) 104, 327, 342
Bsp143I GATC 4 cut(s) 195, 252, 282, 468
Bsp1720I GCTNAGC 1 cut(s) 150
BspCNI CTCAG 2 cut(s) 163, 299
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 9 cut(s) 102, 123, 297, 359, 514, 530, 531, 606, 679
BspMI ACCTGC 1 cut(s) 193
BspQI GCTCTTC 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 402
BsrFI RCCGGY 4 cut(s) 482, 559, 563, 595
BsrI ACTGG 2 cut(s) 73, 522
BssAI RCCGGY 4 cut(s) 482, 559, 563, 595
BssMI GATC 4 cut(s) 195, 252, 282, 468
BssNI GRCGYC 2 cut(s) 122, 273
BssT1I CCWWGG 2 cut(s) 234, 312
Bst2UI CCWGG 5 cut(s) 98, 146, 355, 421, 707
Bst6I CTCTTC 1 cut(s) 332
BstACI GRCGYC 2 cut(s) 122, 273
BstC8I GCNNGC 9 cut(s) 104, 241, 319, 323, 484, 557, 561, 597, 639
BstDEI CTNAG 2 cut(s) 150, 286
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 5 cut(s) 285, 330, 345, 469, 585
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 3 cut(s) 124, 384, 571
BstKTI GATC 4 cut(s) 198, 255, 285, 471
BstMBI GATC 4 cut(s) 195, 252, 282, 468
BstMCI CGRYCG 1 cut(s) 564
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 77, 160, 634, 643
BstNI CCWGG 5 cut(s) 98, 146, 355, 421, 707
BstSCI CCNGG 8 cut(s) 96, 144, 353, 419, 458, 459, 571, 705
BstSLI GKGCMC 1 cut(s) 104
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 166, 169, 172
BstZI CGGCCG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 5 cut(s) 285, 330, 345, 469, 585
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 2 cut(s) 529, 706
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 9 cut(s) 104, 241, 319, 323, 484, 557, 561, 597, 639
CciI TCATGA 1 cut(s) 255
CfoI GCGC 3 cut(s) 124, 384, 571
Cfr10I RCCGGY 4 cut(s) 482, 559, 563, 595
Cfr13I GGNCC 9 cut(s) 100, 101, 238, 295, 423, 513, 529, 604, 678
Cfr9I CCCGGG 1 cut(s) 459
CviAII CATG 2 cut(s) 256, 505
DdeI CTNAG 2 cut(s) 150, 286
DinI GGCGCC 1 cut(s) 123
DpnI GATC 4 cut(s) 197, 254, 284, 470
DpnII GATC 4 cut(s) 195, 252, 282, 468
DrdI GACNNNNNNGTC 1 cut(s) 272
DriI GACNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 4 cut(s) 553, 561, 703, 721
EagI CGGCCG 1 cut(s) 561
Eam1104I CTCTTC 1 cut(s) 332
Eam1105I GACNNNNNGTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 332
EciI GGCGGA 2 cut(s) 67, 683
Ecl136II GAGCTC 2 cut(s) 325, 340
EclXI CGGCCG 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 234, 312
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 3 cut(s) 104, 327, 342
Eco47I GGWCC 4 cut(s) 423, 529, 604, 678
Eco52I CGGCCG 1 cut(s) 561
Eco53kI GAGCTC 2 cut(s) 325, 340
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 3 cut(s) 335, 459, 610
EcoICRI GAGCTC 2 cut(s) 325, 340
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoO109I RGGNCCY 4 cut(s) 100, 295, 529, 678
EcoRII CCWGG 5 cut(s) 96, 144, 353, 419, 705
EcoT14I CCWWGG 2 cut(s) 234, 312
EcoT38I GRGCYC 3 cut(s) 104, 327, 342
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 234, 312
FaeI CATG 2 cut(s) 259, 508
FaiI YATR 4 cut(s) 257, 506, 621, 684
FaqI GGGAC 2 cut(s) 440, 515
FatI CATG 2 cut(s) 255, 504
FauI CCCGC 4 cut(s) 100, 111, 248, 552
FokI GGATG 5 cut(s) 292, 317, 332, 476, 592
FriOI GRGCYC 3 cut(s) 104, 327, 342
FseI GGCCGGCC 1 cut(s) 486
GlaI GCGC 3 cut(s) 123, 383, 570
GsaI CCCAGC 2 cut(s) 46, 628
GsuI CTGGAG 2 cut(s) 128, 374
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 6 cut(s) 460, 483, 560, 564, 572, 596
HhaI GCGC 3 cut(s) 124, 384, 571
Hin1I GRCGYC 2 cut(s) 122, 273
Hin1II CATG 2 cut(s) 259, 508
Hin6I GCGC 3 cut(s) 122, 382, 569
HinP1I GCGC 3 cut(s) 122, 382, 569
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HpaII CCGG 6 cut(s) 460, 483, 560, 564, 572, 596
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 168, 491
Hpy188III TCNNGA 7 cut(s) 175, 217, 247, 256, 277, 391, 716
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 5 cut(s) 119, 269, 449, 503, 637
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 77, 160, 634, 643
HpyF3I CTNAG 2 cut(s) 150, 286
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 2 cut(s) 122, 273
Hsp92II CATG 2 cut(s) 259, 508
HspAI GCGC 3 cut(s) 122, 382, 569
KasI GGCGCC 1 cut(s) 121
KflI GGGWCCC 1 cut(s) 529
KroI GCCGGC 3 cut(s) 482, 559, 595
KroNI GCCGGC 3 cut(s) 484, 561, 597
Kzo9I GATC 4 cut(s) 195, 252, 282, 468
LguI GCTCTTC 1 cut(s) 332
LmnI GCTCC 4 cut(s) 234, 356, 363, 696
Lsp1109I GCAGC 3 cut(s) 166, 169, 172
LweI GCATC 1 cut(s) 252
MaeII ACGT 1 cut(s) 273
MalI GATC 4 cut(s) 197, 254, 284, 470
MbiI CCGCTC 1 cut(s) 351
MboI GATC 4 cut(s) 195, 252, 282, 468
MboII GAAGA 2 cut(s) 262, 319
MhlI GDGCHC 3 cut(s) 104, 327, 342
MlsI TGGCCA 3 cut(s) 555, 705, 723
MluNI TGGCCA 3 cut(s) 555, 705, 723
Mly113I GGCGCC 1 cut(s) 122
Mox20I TGGCCA 3 cut(s) 555, 705, 723
MroNI GCCGGC 3 cut(s) 482, 559, 595
MscI TGGCCA 3 cut(s) 555, 705, 723
Msp20I TGGCCA 3 cut(s) 555, 705, 723
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 6 cut(s) 460, 483, 560, 564, 572, 596
MspR9I CCNGG 8 cut(s) 98, 146, 355, 421, 460, 461, 573, 707
MvaI CCWGG 5 cut(s) 98, 146, 355, 421, 707
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 77, 160, 634, 643
NaeI GCCGGC 3 cut(s) 484, 561, 597
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 3 cut(s) 460, 461, 573
NdeII GATC 4 cut(s) 195, 252, 282, 468
NgoMIV GCCGGC 3 cut(s) 482, 559, 595
NlaIII CATG 2 cut(s) 259, 508
NlaIV GGNNCC 9 cut(s) 102, 123, 297, 359, 514, 530, 531, 606, 679
NmeAIII GCCGAG 2 cut(s) 316, 391
PaeR7I CTCGAG 1 cut(s) 335
PagI TCATGA 1 cut(s) 255
PasI CCCWGGG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 332
PcsI WCGNNNNNNNCGW 2 cut(s) 441, 495
PdiI GCCGGC 3 cut(s) 484, 561, 597
PluTI GGCGCC 1 cut(s) 125
PpuMI RGGWCCY 2 cut(s) 529, 678
Psp124BI GAGCTC 2 cut(s) 327, 342
Psp5II RGGWCCY 2 cut(s) 529, 678
Psp6I CCWGG 5 cut(s) 96, 144, 353, 419, 705
PspFI CCCAGC 2 cut(s) 42, 624
PspGI CCWGG 5 cut(s) 96, 144, 353, 419, 705
PspN4I GGNNCC 9 cut(s) 102, 123, 297, 359, 514, 530, 531, 606, 679
PspOMI GGGCCC 1 cut(s) 100
PspPI GGNCC 9 cut(s) 100, 101, 238, 295, 423, 513, 529, 604, 678
PspPPI RGGWCCY 2 cut(s) 529, 678
PspXI VCTCGAGB 1 cut(s) 335
RigI GGCCGGCC 1 cut(s) 486
SacI GAGCTC 2 cut(s) 327, 342
SapI GCTCTTC 1 cut(s) 332
Sau3AI GATC 4 cut(s) 195, 252, 282, 468
Sau96I GGNCC 9 cut(s) 100, 101, 238, 295, 423, 513, 529, 604, 678
ScrFI CCNGG 8 cut(s) 98, 146, 355, 421, 460, 461, 573, 707
SduI GDGCHC 3 cut(s) 104, 327, 342
SfaNI GCATC 1 cut(s) 252
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 335
SinI GGWCC 4 cut(s) 423, 529, 604, 678
SlaI CTCGAG 1 cut(s) 335
SmaI CCCGGG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SseBI AGGCCT 1 cut(s) 317
SspDI GGCGCC 1 cut(s) 121
SstI GAGCTC 2 cut(s) 327, 342
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 8 cut(s) 96, 144, 353, 419, 458, 459, 571, 705
StyI CCWWGG 2 cut(s) 234, 312
TaiI ACGT 1 cut(s) 276
TaqI TCGA 4 cut(s) 198, 336, 435, 447
TaqII GACCGA 1 cut(s) 440
TauI GCSGC 9 cut(s) 23, 26, 122, 127, 190, 410, 413, 631, 668
TscAI CASTG 2 cut(s) 529, 706
TseI GCWGC 3 cut(s) 154, 157, 160
TspDTI ATGAA 2 cut(s) 272, 319
TspGWI ACGGA 2 cut(s) 103, 640
TspMI CCCGGG 1 cut(s) 459
TspRI CASTG 2 cut(s) 529, 706
VpaK11BI GGWCC 4 cut(s) 423, 529, 604, 678
XagI CCTNNNNNAGG 1 cut(s) 143
XhoI CTCGAG 1 cut(s) 335
XmaI CCCGGG 1 cut(s) 459
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.