Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006761

Physical Location & Seq

Genomic Coordinates Forward (+)

28495891 .. 28498876

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1141200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAACCCAACCCCAACTCTGGCGCCCCCACCTCCGCCGCCGCCGCCCCGACCCAGCAACCACCGCAAGCCCAATCCTCCCCCTACCCAGCAACCCAATCCTCCGTCCCCGCCCTTCCATTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTCCAGATGTTCTGGACCTACCAGCGCCACGAGATTGAGAGCGTCAACGACTTCAAGAATCACCAGCTGCCGCTTGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCCGCATGATCTCCGCCGAGGCCCCCGTCCTCTTCGCCAAAGCCTGCGAGCTCTTCATTCTCGAGCTTACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAGCGCCGGACCCTCCAGAAAAACGACATTGCCGCTGCCATTACCCGCACCGACATATTCGACTTCTTGGTGGATATAGTGCCCCGCGACGAGATCAAGGAGGAGGCGGTGGGGCTCGGAGGGATGGTCGGGGCGACGGCTAGTGGGGTGCCGTACTACTATCCGCCGATGGGCCAGCCGGCTGGTGGCCCCGGGGGGATGATGATAGGGAGGCCTGCGGTGGACGCCTCTGGGGTTTACGGCGTGCAGCCGCCGTCGCAGGCGTGGCAGTCGGTGTGGCAGACTGCGGCGGATGATGGGTCGTACGGGAGTGGAGGGAGCAGTGGACAGGGCAACCTCGACGGTCAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0005829 GO:0006109 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010675 GO:0010677 GO:0016602 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045912 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090575 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000306 GO:2000904 GO:2000905 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

240

Amino Acids

25.83

Weight (kDa)

5.19

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	65 - 136	7.8e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	73 - 136	1e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48590
fragaria_vesca	FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391 FvH4_5g08391
malus_domestica	MD06G1141200.v1.1 MD14G1156400.v1.1
prunus_persica	Prupe.5G150400_v2.0.a1
pyrus_communis	pycom06g13120
rosa_chinensis	RchiOBHm_Chr7g0190051
rosa_laevigata	RLG00000004568
rosa_multiflora	Rmu_sc0004886.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264920
rosa_rugosa	Rorug06G0502000
rosa_samantha	Rh7AG107500 Rh7BG109800 Rh7CG112100 Rh7DG110500
rosa_wichuraiana	Rw7G009280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	267
AccB1I	GGYRCC	2 cut(s)	23, 514
AccBSI	CCGCTC	1 cut(s)	342
AccII	CGCG	1 cut(s)	453
AcyI	GRCGYC	3 cut(s)	24, 264, 591
AfaI	GTAC	2 cut(s)	521, 671
AfiI	CCNNNNNNNGG	4 cut(s)	20, 358, 536, 551
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	344
AluBI	AGCT	4 cut(s)	154, 220, 316, 331
AluI	AGCT	4 cut(s)	154, 220, 316, 331
Alw21I	GWGCWC	1 cut(s)	318
Ama87I	CYCGRG	2 cut(s)	326, 557
AoxI	GGCC	5 cut(s)	252, 285, 538, 553, 578
ApeKI	GCWGC	8 cut(s)	139, 142, 145, 148, 151, 220, 401, 613
AspLEI	GCGC	3 cut(s)	26, 180, 372
AspS9I	GGNCC	5 cut(s)	168, 286, 375, 538, 554
AsuC2I	CCSGG	2 cut(s)	558, 559
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	2 cut(s)	326, 557
AvaII	GGWCC	2 cut(s)	168, 375
BaeGI	GKGCMC	1 cut(s)	450
BanI	GGYRCC	2 cut(s)	23, 514
BanII	GRGCYC	2 cut(s)	318, 483
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	8 cut(s)	151, 154, 157, 160, 163, 207, 388, 625
BccI	CCATC	4 cut(s)	344, 484, 529, 656
BceAI	ACGGC	4 cut(s)	502, 519, 604, 622
BciT130I	CCWGG	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	558, 559
BfaI	CTAG	1 cut(s)	507
BfoI	RGCGCY	3 cut(s)	27, 181, 373
Bme1390I	CCNGG	3 cut(s)	346, 558, 559
Bme18I	GGWCC	2 cut(s)	168, 375
BmeT110I	CYCGRG	2 cut(s)	326, 557
BmgT120I	GGNCC	5 cut(s)	168, 286, 375, 538, 554
BmiI	GGNNCC	7 cut(s)	6, 25, 288, 350, 377, 516, 556
BmrFI	CCNGG	3 cut(s)	346, 558, 559
BmsI	GCATC	1 cut(s)	243
BpmI	CTGGAG	3 cut(s)	119, 140, 365
BpuMI	CCSGG	2 cut(s)	558, 559
BsaHI	GRCGYC	3 cut(s)	24, 264, 591
BsaJI	CCNNGG	5 cut(s)	282, 357, 556, 557, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 358, 536, 551
Bse118I	RCCGGY	1 cut(s)	544
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	5 cut(s)	282, 357, 556, 557, 558
BseGI	GGATG	4 cut(s)	336, 495, 570, 664
BseLI	CCNNNNNNNGG	4 cut(s)	20, 358, 536, 551
BseMI	GCAATG	1 cut(s)	393
BseRI	GAGGAG	3 cut(s)	122, 374, 482
BseSI	GKGCMC	1 cut(s)	450
BseXI	GCAGC	8 cut(s)	151, 154, 157, 160, 163, 207, 388, 625
BseYI	CCCAGC	2 cut(s)	54, 88
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	5 cut(s)	254, 287, 540, 555, 580
BshNI	GGYRCC	2 cut(s)	23, 514
BsiHKAI	GWGCWC	1 cut(s)	318
BsiHKCI	CYCGRG	2 cut(s)	326, 557
BsiSI	CCGG	3 cut(s)	373, 545, 558
BsiWI	CGTACG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	4 cut(s)	20, 358, 536, 551
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	5 cut(s)	254, 287, 540, 555, 580
BsoBI	CYCGRG	2 cut(s)	326, 557
Bsp1286I	GDGCHC	3 cut(s)	318, 450, 483
Bsp143I	GATC	3 cut(s)	243, 273, 459
BspANI	GGCC	5 cut(s)	254, 287, 540, 555, 580
BspFNI	CGCG	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	7 cut(s)	6, 25, 288, 350, 377, 516, 556
BspQI	GCTCTTC	1 cut(s)	323
BspT107I	GGYRCC	2 cut(s)	23, 514
BsrBI	CCGCTC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	544
BssAI	RCCGGY	1 cut(s)	544
BssECI	CCNNGG	5 cut(s)	282, 357, 556, 557, 558
BssMI	GATC	3 cut(s)	243, 273, 459
BssNI	GRCGYC	3 cut(s)	24, 264, 591
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	710
Bst6I	CTCTTC	2 cut(s)	302, 323
BstACI	GRCGYC	3 cut(s)	24, 264, 591
BstF5I	GGATG	4 cut(s)	336, 495, 570, 664
BstFNI	CGCG	1 cut(s)	453
BstH2I	RGCGCY	3 cut(s)	27, 181, 373
BstHHI	GCGC	3 cut(s)	26, 180, 372
BstKTI	GATC	3 cut(s)	246, 276, 462
BstMBI	GATC	3 cut(s)	243, 273, 459
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 64, 145, 148, 151, 590, 622, 631
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	3 cut(s)	344, 556, 557
BstSLI	GKGCMC	1 cut(s)	450
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	8 cut(s)	151, 154, 157, 160, 163, 207, 388, 625
BstXI	CCANNNNNNTGG	1 cut(s)	548
BsuRI	GGCC	5 cut(s)	254, 287, 540, 555, 580
BtsCI	GGATG	4 cut(s)	336, 495, 570, 664
BtsI	GCAGTG	1 cut(s)	694
BtsIMutI	CAGTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	3 cut(s)	26, 180, 372
Cfr10I	RCCGGY	1 cut(s)	544
Cfr13I	GGNCC	5 cut(s)	168, 286, 375, 538, 554
Cfr9I	CCCGGG	1 cut(s)	557
CseI	GACGC	2 cut(s)	184, 599
Csp6I	GTAC	2 cut(s)	520, 670
CviAII	CATG	2 cut(s)	247, 271
CviQI	GTAC	2 cut(s)	520, 670
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	3 cut(s)	245, 275, 461
DpnII	GATC	3 cut(s)	243, 273, 459
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	302, 323
EarI	CTCTTC	2 cut(s)	302, 323
EciI	GGCGGA	4 cut(s)	25, 268, 519, 671
Ecl136II	GAGCTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	580
Eco24I	GRGCYC	2 cut(s)	318, 483
Eco47I	GGWCC	2 cut(s)	168, 375
Eco53kI	GAGCTC	1 cut(s)	316
Eco88I	CYCGRG	2 cut(s)	326, 557
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	344
EcoT38I	GRGCYC	2 cut(s)	318, 483
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
FaeI	CATG	2 cut(s)	250, 274
FaiI	YATR	4 cut(s)	248, 272, 422, 443
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	246, 270
FauI	CCCGC	4 cut(s)	118, 239, 419, 458
FokI	GGATG	4 cut(s)	323, 502, 577, 671
FriOI	GRGCYC	2 cut(s)	318, 483
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	3 cut(s)	25, 179, 371
GsaI	CCCAGC	2 cut(s)	58, 92
GsuI	CTGGAG	3 cut(s)	119, 140, 365
HaeII	RGCGCY	3 cut(s)	27, 181, 373
HaeIII	GGCC	5 cut(s)	254, 287, 540, 555, 580
HapII	CCGG	3 cut(s)	373, 545, 558
HgaI	GACGC	2 cut(s)	184, 599
HhaI	GCGC	3 cut(s)	26, 180, 372
Hin1I	GRCGYC	3 cut(s)	24, 264, 591
Hin1II	CATG	2 cut(s)	250, 274
Hin6I	GCGC	3 cut(s)	24, 178, 370
HinP1I	GCGC	3 cut(s)	24, 178, 370
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	3 cut(s)	373, 545, 558
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	4 cut(s)	199, 589, 604, 692
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	7 cut(s)	157, 166, 208, 238, 247, 326, 382
Hpy8I	GTNNAC	4 cut(s)	199, 589, 604, 692
Hpy99I	CGWCG	5 cut(s)	260, 458, 505, 625, 710
HpyAV	CCTTC	2 cut(s)	125, 244
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	1 cut(s)	613
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 64, 145, 148, 151, 590, 622, 631
HpySE526I	ACGT	1 cut(s)	264
Hsp92I	GRCGYC	3 cut(s)	24, 264, 591
Hsp92II	CATG	2 cut(s)	250, 274
HspAI	GCGC	3 cut(s)	24, 178, 370
KasI	GGCGCC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	544
KroNI	GCCGGC	1 cut(s)	546
Kzo9I	GATC	3 cut(s)	243, 273, 459
LguI	GCTCTTC	1 cut(s)	323
LmnI	GCTCC	4 cut(s)	159, 347, 354, 684
Lsp1109I	GCAGC	8 cut(s)	151, 154, 157, 160, 163, 207, 388, 625
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	264
MalI	GATC	3 cut(s)	245, 275, 461
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	3 cut(s)	243, 273, 459
MboII	GAAGA	3 cut(s)	253, 289, 310
MhlI	GDGCHC	3 cut(s)	318, 450, 483
Mly113I	GGCGCC	1 cut(s)	24
MroNI	GCCGGC	1 cut(s)	544
MseI	TTAA	1 cut(s)	718
MspA1I	CMGCKG	2 cut(s)	220, 401
MspI	CCGG	3 cut(s)	373, 545, 558
MspR9I	CCNGG	3 cut(s)	346, 558, 559
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	8 cut(s)	44, 64, 145, 148, 151, 590, 622, 631
NaeI	GCCGGC	1 cut(s)	546
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	2 cut(s)	558, 559
NdeII	GATC	3 cut(s)	243, 273, 459
NgoMIV	GCCGGC	1 cut(s)	544
NlaIII	CATG	2 cut(s)	250, 274
NlaIV	GGNNCC	7 cut(s)	6, 25, 288, 350, 377, 516, 556
NmeAIII	GCCGAG	2 cut(s)	307, 382
PaeR7I	CTCGAG	1 cut(s)	326
PagI	TCATGA	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	211
Pfl23II	CGTACG	1 cut(s)	669
PluTI	GGCGCC	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	2 cut(s)	54, 88
PspGI	CCWGG	1 cut(s)	344
PspLI	CGTACG	1 cut(s)	669
PspN4I	GGNNCC	7 cut(s)	6, 25, 288, 350, 377, 516, 556
PspPI	GGNCC	5 cut(s)	168, 286, 375, 538, 554
PvuII	CAGCTG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	521, 671
RsaNI	GTAC	2 cut(s)	520, 670
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	718
Sau3AI	GATC	3 cut(s)	243, 273, 459
Sau96I	GGNCC	5 cut(s)	168, 286, 375, 538, 554
ScrFI	CCNGG	3 cut(s)	346, 558, 559
SduI	GDGCHC	3 cut(s)	318, 450, 483
SetI	ASST	9 cut(s)	35, 132, 156, 173, 222, 267, 318, 333, 705
SfaNI	GCATC	1 cut(s)	243
SfoI	GGCGCC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	326
SinI	GGWCC	2 cut(s)	168, 375
SlaI	CTCGAG	1 cut(s)	326
SmaI	CCCGGG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SseBI	AGGCCT	1 cut(s)	580
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	580
StyD4I	CCNGG	3 cut(s)	344, 556, 557
TaaI	ACNGT	1 cut(s)	710
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	3 cut(s)	327, 426, 705
TauI	GCSGC	7 cut(s)	41, 44, 47, 226, 401, 619, 656
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	1 cut(s)	718
Tru9I	TTAA	1 cut(s)	718
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	8 cut(s)	139, 142, 145, 148, 151, 220, 401, 613
TspDTI	ATGAA	2 cut(s)	263, 310
TspGWI	ACGGA	1 cut(s)	94
TspMI	CCCGGG	1 cut(s)	557
TspRI	CASTG	1 cut(s)	694
VpaK11BI	GGWCC	2 cut(s)	168, 375
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XhoI	CTCGAG	1 cut(s)	326
XmaI	CCCGGG	1 cut(s)	557
XspI	CTAG	1 cut(s)	507
ZraI	GACGTC	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.