Prupe.5G150400_v2.0.a1

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0006761
Physical Location & Seq
Forward (+)
13652222 .. 13654960
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G150400.1

Sequence Viewer

Length: 714 bp
ATGGACACCAACCCCAACACCACCACCACCACCACCACCCCCAACCCCACCCAGCAACAACAGCAAGCTCAATCCTCCTACCCACCAACCCAATCTTCAGTCCCTGCCCCTCCATTTCATCATCTCCTCCAGCAGCAGCAGCAGCAGCTGCAGATGTTCTGGACCTACCAGCGCCACGACATTGAACAAGTCAACGACTTTAAGAACCACCAGCTCCCATTGGCTCGCATCAAGAAGATCATGAAGGCGGATGAGGACGTCCGCATGATATCGGCCGAGGCCCCCGTTCTCTTCGCCAAGGCCTGCGAGCTGTTCATCCTCGAGCTCACAATCCGCTCTTGGCTCCACGCCGAGGAGAACAAGCGACGTACTTTGCAGAAAAACGACATTGCCGCCGCGATTACCAGGACCGATATATTCGATTTCTTGGTGGATATTGTGCCCCGAGACGAGATCAAGGACGAGGCGGTGGGGCTCGGGGGGATGGTGGGAGCCACGGCAAGTGGTGTGCCGTACTACTATCCGCCGATGGGTCAGCCGGCTGGTGGGCCCGGGGGGATGATGATTGGGAGGCCGGCGGTGGACCCCGCTGCAGTTTATGGAGTGCAGCCGCCGTCTCAGGCGTGGCAGTCGGTGTGGCAGACAGCGGCGGATGATGGGTCGTATGGGAGTGGTGGCAGCAGTGGACAGGGCAACCTTGACGGTCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0005829 GO:0006109 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010675 GO:0010677 GO:0016602 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045912 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090575 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000306 GO:2000904 GO:2000905 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 map04612 map05152
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

5.14

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 336
AccII CGCG 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 2 cut(s) 370, 515
AfiI CCNNNNNNNGG 3 cut(s) 352, 530, 545
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 404
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
AluBI AGCT 5 cut(s) 68, 148, 214, 310, 325
AluI AGCT 5 cut(s) 68, 148, 214, 310, 325
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 2 cut(s) 441, 621
AlwNI CAGNNNCTG 2 cut(s) 104, 148
Ama87I CYCGRG 4 cut(s) 320, 444, 476, 551
AoxI GGCC 5 cut(s) 273, 279, 300, 548, 572
ApaI GGGCCC 1 cut(s) 552
ApeKI GCWGC 9 cut(s) 133, 136, 139, 142, 145, 148, 590, 607, 678
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 6 cut(s) 162, 280, 408, 548, 549, 583
AsuC2I CCSGG 2 cut(s) 552, 553
AvaI CYCGRG 4 cut(s) 320, 444, 476, 551
AvaII GGWCC 3 cut(s) 162, 408, 583
BaeGI GKGCMC 2 cut(s) 444, 552
BanII GRGCYC 3 cut(s) 327, 477, 552
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 9 cut(s) 135, 145, 148, 151, 154, 157, 577, 619, 690
BccI CCATC 3 cut(s) 478, 523, 650
BceAI ACGGC 3 cut(s) 496, 513, 598
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 2 cut(s) 552, 553
BcoDI GTCTC 2 cut(s) 441, 621
BfmI CTRYAG 2 cut(s) 149, 591
BfoI RGCGCY 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 406, 552, 553
Bme18I GGWCC 3 cut(s) 162, 408, 583
BmeT110I CYCGRG 4 cut(s) 320, 444, 476, 551
BmgT120I GGNCC 6 cut(s) 162, 280, 408, 548, 549, 583
BmiI GGNNCC 5 cut(s) 282, 344, 493, 550, 585
BmrFI CCNGG 3 cut(s) 406, 552, 553
BmsI GCATC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 113
BpuMI CCSGG 2 cut(s) 552, 553
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 6 cut(s) 276, 297, 351, 495, 551, 552
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 530, 545
Bse118I RCCGGY 2 cut(s) 538, 574
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 6 cut(s) 276, 297, 351, 495, 551, 552
BseGI GGATG 5 cut(s) 256, 315, 489, 564, 658
BseLI CCNNNNNNNGG 3 cut(s) 352, 530, 545
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 632
BseRI GAGGAG 2 cut(s) 116, 368
BseSI GKGCMC 2 cut(s) 444, 552
BseX3I CGGCCG 1 cut(s) 273
BseXI GCAGC 9 cut(s) 135, 145, 148, 151, 154, 157, 577, 619, 690
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 276
BshFI GGCC 5 cut(s) 275, 281, 302, 550, 574
BsiEI CGRYCG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 4 cut(s) 320, 444, 476, 551
BsiSI CCGG 3 cut(s) 539, 552, 575
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 3 cut(s) 352, 530, 545
BsmAI GTCTC 2 cut(s) 441, 621
BsmBI CGTCTC 2 cut(s) 441, 621
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 5 cut(s) 275, 281, 302, 550, 574
BsoBI CYCGRG 4 cut(s) 320, 444, 476, 551
Bsp120I GGGCCC 1 cut(s) 548
Bsp1286I GDGCHC 4 cut(s) 327, 444, 477, 552
Bsp143I GATC 2 cut(s) 237, 453
BspANI GGCC 5 cut(s) 275, 281, 302, 550, 574
BspCNI CTCAG 1 cut(s) 631
BspFNI CGCG 1 cut(s) 398
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 5 cut(s) 282, 344, 493, 550, 585
BspMAI CTGCAG 2 cut(s) 153, 595
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 2 cut(s) 538, 574
BssAI RCCGGY 2 cut(s) 538, 574
BssECI CCNNGG 6 cut(s) 276, 297, 351, 495, 551, 552
BssMI GATC 2 cut(s) 237, 453
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 148
BstC8I GCNNGC 6 cut(s) 66, 226, 304, 308, 540, 576
BstDEI CTNAG 1 cut(s) 618
BstDSI CCRYGG 1 cut(s) 495
BstF5I GGATG 5 cut(s) 256, 315, 489, 564, 658
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 2 cut(s) 240, 456
BstMAI GTCTC 2 cut(s) 441, 621
BstMBI GATC 2 cut(s) 237, 453
BstMCI CGRYCG 1 cut(s) 276
BstMWI GCNNNNNNNGC 5 cut(s) 61, 139, 142, 145, 148
BstNI CCWGG 1 cut(s) 406
BstSCI CCNGG 3 cut(s) 404, 550, 551
BstSFI CTRYAG 2 cut(s) 149, 591
BstSLI GKGCMC 2 cut(s) 444, 552
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 9 cut(s) 135, 145, 148, 151, 154, 157, 577, 619, 690
BstZI CGGCCG 1 cut(s) 273
BsuRI GGCC 5 cut(s) 275, 281, 302, 550, 574
BtgI CCRYGG 1 cut(s) 495
BtsCI GGATG 5 cut(s) 256, 315, 489, 564, 658
BtsI GCAGTG 1 cut(s) 688
BtsIMutI CAGTG 1 cut(s) 688
Cac8I GCNNGC 6 cut(s) 66, 226, 304, 308, 540, 576
CaiI CAGNNNCTG 2 cut(s) 104, 148
CciI TCATGA 1 cut(s) 240
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 2 cut(s) 538, 574
Cfr13I GGNCC 6 cut(s) 162, 280, 408, 548, 549, 583
Cfr9I CCCGGG 1 cut(s) 551
Csp6I GTAC 2 cut(s) 369, 514
CviAII CATG 2 cut(s) 241, 265
CviQI GTAC 2 cut(s) 369, 514
DdeI CTNAG 1 cut(s) 618
DpnI GATC 2 cut(s) 239, 455
DpnII GATC 2 cut(s) 237, 453
EaeI YGGCCR 1 cut(s) 273
EagI CGGCCG 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EciI GGCGGA 3 cut(s) 263, 513, 665
Ecl136II GAGCTC 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 297
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 3 cut(s) 327, 477, 552
Eco32I GATATC 1 cut(s) 270
Eco47I GGWCC 3 cut(s) 162, 408, 583
Eco52I CGGCCG 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 4 cut(s) 320, 444, 476, 551
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 404
EcoRV GATATC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 3 cut(s) 327, 477, 552
ErhI CCWWGG 1 cut(s) 297
Esp3I CGTCTC 2 cut(s) 441, 621
FaeI CATG 2 cut(s) 244, 268
FaiI YATR 5 cut(s) 242, 266, 416, 600, 666
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 240, 264
FauI CCCGC 1 cut(s) 595
FokI GGATG 5 cut(s) 263, 302, 496, 571, 665
FriOI GRGCYC 3 cut(s) 327, 477, 552
GlaI GCGC 1 cut(s) 173
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 5 cut(s) 275, 281, 302, 550, 574
HapII CCGG 3 cut(s) 539, 552, 575
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 244, 268
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HpaII CCGG 3 cut(s) 539, 552, 575
Hpy166II GTNNAC 3 cut(s) 193, 583, 686
Hpy188III TCNNGA 3 cut(s) 160, 232, 241
Hpy8I GTNNAC 3 cut(s) 193, 583, 686
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 2 cut(s) 258, 367
HpyCH4V TGCA 4 cut(s) 151, 376, 593, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 139, 142, 145, 148
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 2 cut(s) 258, 367
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 244, 268
HspAI GCGC 1 cut(s) 172
KroI GCCGGC 2 cut(s) 538, 574
KroNI GCCGGC 2 cut(s) 540, 576
Kzo9I GATC 2 cut(s) 237, 453
LmnI GCTCC 3 cut(s) 219, 348, 491
Lsp1109I GCAGC 9 cut(s) 135, 145, 148, 151, 154, 157, 577, 619, 690
LweI GCATC 1 cut(s) 237
MaeII ACGT 2 cut(s) 258, 367
MalI GATC 2 cut(s) 239, 455
MbiI CCGCTC 1 cut(s) 336
MboI GATC 2 cut(s) 237, 453
MboII GAAGA 3 cut(s) 87, 247, 283
MhlI GDGCHC 4 cut(s) 327, 444, 477, 552
MnlI CCTC 9 cut(s) 85, 120, 137, 247, 271, 329, 346, 457, 564
MroNI GCCGGC 2 cut(s) 538, 574
MseI TTAA 2 cut(s) 201, 712
MspA1I CMGCKG 3 cut(s) 148, 590, 647
MspI CCGG 3 cut(s) 539, 552, 575
MspR9I CCNGG 3 cut(s) 406, 552, 553
MvaI CCWGG 1 cut(s) 406
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 61, 139, 142, 145, 148
NaeI GCCGGC 2 cut(s) 540, 576
NciI CCSGG 2 cut(s) 552, 553
NdeII GATC 2 cut(s) 237, 453
NgoMIV GCCGGC 2 cut(s) 538, 574
NlaIII CATG 2 cut(s) 244, 268
NlaIV GGNNCC 5 cut(s) 282, 344, 493, 550, 585
NmeAIII GCCGAG 2 cut(s) 301, 376
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 240
PceI AGGCCT 1 cut(s) 302
PdiI GCCGGC 2 cut(s) 540, 576
Psp124BI GAGCTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 5 cut(s) 282, 344, 493, 550, 585
PspOMI GGGCCC 1 cut(s) 548
PspPI GGNCC 6 cut(s) 162, 280, 408, 548, 549, 583
PspXI VCTCGAGB 1 cut(s) 320
PstI CTGCAG 2 cut(s) 153, 595
PstNI CAGNNNCTG 2 cut(s) 104, 148
PvuII CAGCTG 1 cut(s) 148
RsaI GTAC 2 cut(s) 370, 515
RsaNI GTAC 2 cut(s) 369, 514
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 201, 712
Sau3AI GATC 2 cut(s) 237, 453
Sau96I GGNCC 6 cut(s) 162, 280, 408, 548, 549, 583
ScrFI CCNGG 3 cut(s) 406, 552, 553
SduI GDGCHC 4 cut(s) 327, 444, 477, 552
SetI ASST 9 cut(s) 70, 150, 167, 216, 261, 312, 327, 370, 699
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 2 cut(s) 149, 591
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 3 cut(s) 162, 408, 583
SlaI CTCGAG 1 cut(s) 320
SmaI CCCGGG 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
SseBI AGGCCT 1 cut(s) 302
SstI GAGCTC 1 cut(s) 327
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 3 cut(s) 404, 550, 551
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 2 cut(s) 261, 370
TaqI TCGA 2 cut(s) 321, 420
TaqII GACCGA 1 cut(s) 425
TauI GCSGC 4 cut(s) 395, 398, 613, 650
Tru1I TTAA 2 cut(s) 201, 712
Tru9I TTAA 2 cut(s) 201, 712
TscAI CASTG 1 cut(s) 688
TseI GCWGC 9 cut(s) 133, 136, 139, 142, 145, 148, 590, 607, 678
TspDTI ATGAA 3 cut(s) 107, 257, 304
TspMI CCCGGG 1 cut(s) 551
TspRI CASTG 1 cut(s) 688
VpaK11BI GGWCC 3 cut(s) 162, 408, 583
XhoI CTCGAG 1 cut(s) 320
XmaI CCCGGG 1 cut(s) 551
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.