RchiOBHm_Chr7g0190051

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006761
Physical Location & Seq
Forward (+)
9275991 .. 9278753
2763 bp
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UTR
Exon/CDS
Intron
PRQ16974

Sequence Viewer

Length: 726 bp
ATGGACAACAACCCCAACGCCGCCGCCACCGCCACCGCCATTACCGCCCAGCACCAGCACCAAGCCCAGTCCGCCACCTACCCTCCGGCCCAGGGCGGCCCGCCTTCCTCCGTCGCGGCGGCGCCCTTCCACCACCTGCTCCAGGCTCAGCAGCAGCAGCTGCAGATGTTCTGGAACTACCAGCGGCAGGAGATCGAGCAGGTCAACGACTTCAAGAACCACCAGCTCCCCTTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCAGGATGATCTCAGCCGAGGCCCCCGTCCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAACGGCGCACTCTCCAGAAAAACGACATTGCCGCCGCCATTACCAGGACCGATATTTTCGATTTCCTCGTCGATATTGTCCCCCGGGATGAGATCAAGGACGAGGCCGGCCTCGGAGCTGTCGGCATGGTGGGGACCACCGCCAGTGGGGTCCCCTACTACTACCCGCCGATTGGCCAGCCCGCCGGTGCGCCGGGAGGGATGATGATTGGGAGGCCGGCCATGGACCCCACCGGCGTTTATGCGCAGCCCCCGTCGCAGGCGTGGCAGTCGGTGTGGCAGACCGCGGCGGACGATGGGTCCTATGGGAGTGGAGGGAGCAGTGGCCAGGGCAATCTTGATGGCCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0005829 GO:0006109 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009739 GO:0009740 GO:0009755 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010029 GO:0010033 GO:0010099 GO:0010468 GO:0010476 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010628 GO:0010675 GO:0010677 GO:0016602 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0032881 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045912 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0080090 GO:0090575 GO:0097305 GO:0097306 GO:0140110 GO:1900140 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000028 GO:2000030 GO:2000112 GO:2000241 GO:2000306 GO:2000904 GO:2000905 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04612 ko05152 map04612 map05152
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

241

Amino Acids

26.06

Weight (kDa)

5.29

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 67 - 138 9.7e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 75 - 138 1e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
AasI GACNNNNNNGTC 1 cut(s) 269
AatII GACGTC 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 618
Acc36I ACCTGC 2 cut(s) 144, 190
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 348
AccII CGCG 2 cut(s) 116, 659
AcoI YGGCCR 4 cut(s) 547, 591, 697, 715
AcyI GRCGYC 2 cut(s) 122, 270
AfiI CCNNNNNNNGG 8 cut(s) 92, 142, 187, 364, 417, 519, 545, 631
AgsI TTSAA 1 cut(s) 214
AhdI GACNNNNNGTC 1 cut(s) 670
AjnI CCWGG 5 cut(s) 90, 141, 350, 416, 699
AluBI AGCT 5 cut(s) 160, 226, 322, 337, 491
AluI AGCT 5 cut(s) 160, 226, 322, 337, 491
Alw21I GWGCWC 2 cut(s) 324, 339
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 2 cut(s) 332, 456
ApeKI GCWGC 5 cut(s) 151, 154, 157, 160, 619
AspLEI GCGC 4 cut(s) 124, 381, 565, 619
AspS9I GGNCC 9 cut(s) 88, 98, 235, 292, 420, 507, 523, 598, 672
AsuC2I CCSGG 3 cut(s) 457, 458, 567
AsuHPI GGTGA 1 cut(s) 331
AvaI CYCGRG 2 cut(s) 332, 456
AvaII GGWCC 5 cut(s) 420, 507, 523, 598, 672
BalI TGGCCA 3 cut(s) 549, 699, 717
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 324, 339
Bbv12I GWGCWC 2 cut(s) 324, 339
BbvI GCAGC 5 cut(s) 147, 163, 166, 169, 631
BccI CCATC 3 cut(s) 350, 662, 707
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 5 cut(s) 92, 143, 352, 418, 701
BcnI CCSGG 3 cut(s) 457, 458, 567
BfmI CTRYAG 1 cut(s) 161
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 2 cut(s) 144, 190
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 8 cut(s) 92, 143, 352, 418, 457, 458, 567, 701
Bme18I GGWCC 5 cut(s) 420, 507, 523, 598, 672
BmeRI GACNNNNNGTC 1 cut(s) 670
BmeT110I CYCGRG 2 cut(s) 332, 456
BmgT120I GGNCC 9 cut(s) 88, 98, 235, 292, 420, 507, 523, 598, 672
BmiI GGNNCC 8 cut(s) 123, 294, 356, 508, 524, 525, 600, 673
BmrFI CCNGG 8 cut(s) 92, 143, 352, 418, 457, 458, 567, 701
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 61
BpmI CTGGAG 2 cut(s) 125, 371
Bpu1102I GCTNAGC 1 cut(s) 147
BpuMI CCSGG 3 cut(s) 457, 458, 567
BsaHI GRCGYC 2 cut(s) 122, 270
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 8 cut(s) 92, 142, 187, 364, 417, 519, 545, 631
Bse118I RCCGGY 4 cut(s) 479, 557, 589, 605
Bse1I ACTGG 2 cut(s) 67, 516
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 5 cut(s) 92, 143, 352, 418, 701
BseGI GGATG 5 cut(s) 282, 327, 342, 466, 579
BseLI CCNNNNNNNGG 8 cut(s) 92, 142, 187, 364, 417, 519, 545, 631
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 161, 297
BseNI ACTGG 2 cut(s) 67, 516
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 5 cut(s) 147, 163, 166, 169, 631
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 2 cut(s) 116, 659
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 324, 339
BsiHKCI CYCGRG 2 cut(s) 332, 456
BsiSI CCGG 7 cut(s) 86, 457, 480, 558, 566, 590, 606
BslFI GGGAC 3 cut(s) 437, 509, 520
BslI CCNNNNNNNGG 8 cut(s) 92, 142, 187, 364, 417, 519, 545, 631
BsmFI GGGAC 3 cut(s) 437, 509, 520
BsoBI CYCGRG 2 cut(s) 332, 456
Bsp1286I GDGCHC 2 cut(s) 324, 339
Bsp143I GATC 4 cut(s) 192, 249, 279, 465
Bsp1720I GCTNAGC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 594
BspCNI CTCAG 2 cut(s) 160, 296
BspFNI CGCG 2 cut(s) 116, 659
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 8 cut(s) 123, 294, 356, 508, 524, 525, 600, 673
BspMAI CTGCAG 1 cut(s) 165
BspMI ACCTGC 2 cut(s) 144, 190
BspQI GCTCTTC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 399
BsrFI RCCGGY 4 cut(s) 479, 557, 589, 605
BsrI ACTGG 2 cut(s) 67, 516
BssAI RCCGGY 4 cut(s) 479, 557, 589, 605
BssMI GATC 4 cut(s) 192, 249, 279, 465
BssNI GRCGYC 2 cut(s) 122, 270
BssT1I CCWWGG 3 cut(s) 231, 309, 594
Bst2UI CCWGG 5 cut(s) 92, 143, 352, 418, 701
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 2 cut(s) 122, 270
BstAPI GCANNNNNTGC 1 cut(s) 160
BstC8I GCNNGC 9 cut(s) 101, 238, 316, 320, 481, 551, 555, 591, 633
BstDEI CTNAG 2 cut(s) 147, 283
BstDSI CCRYGG 2 cut(s) 594, 657
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 282, 327, 342, 466, 579
BstFNI CGCG 2 cut(s) 116, 659
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 4 cut(s) 124, 381, 565, 619
BstKTI GATC 4 cut(s) 195, 252, 282, 468
BstMBI GATC 4 cut(s) 192, 249, 279, 465
BstMWI GCNNNNNNNGC 7 cut(s) 29, 44, 71, 157, 160, 628, 637
BstNI CCWGG 5 cut(s) 92, 143, 352, 418, 701
BstSCI CCNGG 8 cut(s) 90, 141, 350, 416, 455, 456, 565, 699
BstSFI CTRYAG 1 cut(s) 161
BstUI CGCG 2 cut(s) 116, 659
BstV1I GCAGC 5 cut(s) 147, 163, 166, 169, 631
BtgI CCRYGG 2 cut(s) 594, 657
BtsCI GGATG 5 cut(s) 282, 327, 342, 466, 579
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 2 cut(s) 523, 700
BveI ACCTGC 2 cut(s) 144, 190
Cac8I GCNNGC 9 cut(s) 101, 238, 316, 320, 481, 551, 555, 591, 633
CaiI CAGNNNCTG 1 cut(s) 160
CciI TCATGA 1 cut(s) 252
CfoI GCGC 4 cut(s) 124, 381, 565, 619
Cfr10I RCCGGY 4 cut(s) 479, 557, 589, 605
Cfr13I GGNCC 9 cut(s) 88, 98, 235, 292, 420, 507, 523, 598, 672
Cfr42I CCGCGG 1 cut(s) 660
Cfr9I CCCGGG 1 cut(s) 456
CviAII CATG 3 cut(s) 253, 499, 595
DdeI CTNAG 2 cut(s) 147, 283
DinI GGCGCC 1 cut(s) 123
DpnI GATC 4 cut(s) 194, 251, 281, 467
DpnII GATC 4 cut(s) 192, 249, 279, 465
DrdI GACNNNNNNGTC 1 cut(s) 269
DriI GACNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 4 cut(s) 547, 591, 697, 715
Eam1104I CTCTTC 1 cut(s) 329
Eam1105I GACNNNNNGTC 1 cut(s) 670
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 2 cut(s) 61, 677
Ecl136II GAGCTC 2 cut(s) 322, 337
Eco130I CCWWGG 3 cut(s) 231, 309, 594
Eco147I AGGCCT 1 cut(s) 314
Eco24I GRGCYC 2 cut(s) 324, 339
Eco47I GGWCC 5 cut(s) 420, 507, 523, 598, 672
Eco53kI GAGCTC 2 cut(s) 322, 337
Eco88I CYCGRG 2 cut(s) 332, 456
EcoICRI GAGCTC 2 cut(s) 322, 337
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 3 cut(s) 292, 523, 672
EcoRII CCWGG 5 cut(s) 90, 141, 350, 416, 699
EcoT14I CCWWGG 3 cut(s) 231, 309, 594
EcoT38I GRGCYC 2 cut(s) 324, 339
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 231, 309, 594
FaeI CATG 3 cut(s) 256, 502, 598
FaiI YATR 5 cut(s) 254, 500, 596, 615, 678
FaqI GGGAC 3 cut(s) 437, 509, 520
FatI CATG 3 cut(s) 252, 498, 594
FauI CCCGC 4 cut(s) 108, 245, 546, 562
FokI GGATG 5 cut(s) 289, 314, 329, 473, 586
FriOI GRGCYC 2 cut(s) 324, 339
FseI GGCCGGCC 2 cut(s) 483, 593
FspI TGCGCA 1 cut(s) 618
GlaI GCGC 4 cut(s) 123, 380, 564, 618
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 2 cut(s) 125, 371
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 7 cut(s) 86, 457, 480, 558, 566, 590, 606
HhaI GCGC 4 cut(s) 124, 381, 565, 619
Hin1I GRCGYC 2 cut(s) 122, 270
Hin1II CATG 3 cut(s) 256, 502, 598
Hin6I GCGC 4 cut(s) 122, 379, 563, 617
HinP1I GCGC 4 cut(s) 122, 379, 563, 617
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HpaII CCGG 7 cut(s) 86, 457, 480, 558, 566, 590, 606
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 488
Hpy188III TCNNGA 7 cut(s) 172, 214, 244, 253, 274, 388, 710
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 4 cut(s) 116, 266, 446, 631
HpyAV CCTTC 3 cut(s) 114, 136, 250
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 44, 71, 157, 160, 628, 637
HpyF3I CTNAG 2 cut(s) 147, 283
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 122, 270
Hsp92II CATG 3 cut(s) 256, 502, 598
HspAI GCGC 4 cut(s) 122, 379, 563, 617
KasI GGCGCC 1 cut(s) 121
KflI GGGWCCC 1 cut(s) 523
KroI GCCGGC 2 cut(s) 479, 589
KroNI GCCGGC 2 cut(s) 481, 591
KspI CCGCGG 1 cut(s) 660
Kzo9I GATC 4 cut(s) 192, 249, 279, 465
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 6 cut(s) 144, 231, 353, 360, 488, 690
Lsp1109I GCAGC 5 cut(s) 147, 163, 166, 169, 631
LweI GCATC 1 cut(s) 249
MaeII ACGT 1 cut(s) 270
MalI GATC 4 cut(s) 194, 251, 281, 467
MbiI CCGCTC 1 cut(s) 348
MboI GATC 4 cut(s) 192, 249, 279, 465
MboII GAAGA 2 cut(s) 259, 316
MhlI GDGCHC 2 cut(s) 324, 339
MlsI TGGCCA 3 cut(s) 549, 699, 717
MluNI TGGCCA 3 cut(s) 549, 699, 717
Mly113I GGCGCC 1 cut(s) 122
Mox20I TGGCCA 3 cut(s) 549, 699, 717
MroNI GCCGGC 2 cut(s) 479, 589
MscI TGGCCA 3 cut(s) 549, 699, 717
MseI TTAA 1 cut(s) 724
Msp20I TGGCCA 3 cut(s) 549, 699, 717
MspA1I CMGCKG 3 cut(s) 160, 184, 659
MspI CCGG 7 cut(s) 86, 457, 480, 558, 566, 590, 606
MspR9I CCNGG 8 cut(s) 92, 143, 352, 418, 457, 458, 567, 701
MvaI CCWGG 5 cut(s) 92, 143, 352, 418, 701
MvnI CGCG 2 cut(s) 116, 659
MwoI GCNNNNNNNGC 7 cut(s) 29, 44, 71, 157, 160, 628, 637
NaeI GCCGGC 2 cut(s) 481, 591
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 3 cut(s) 457, 458, 567
NcoI CCATGG 1 cut(s) 594
NdeII GATC 4 cut(s) 192, 249, 279, 465
NgoMIV GCCGGC 2 cut(s) 479, 589
NlaIII CATG 3 cut(s) 256, 502, 598
NlaIV GGNNCC 8 cut(s) 123, 294, 356, 508, 524, 525, 600, 673
NmeAIII GCCGAG 2 cut(s) 313, 388
NsbI TGCGCA 1 cut(s) 618
PaeR7I CTCGAG 1 cut(s) 332
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 144
PasI CCCWGGG 1 cut(s) 91
PceI AGGCCT 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PdiI GCCGGC 2 cut(s) 481, 591
PluTI GGCGCC 1 cut(s) 125
PpuMI RGGWCCY 2 cut(s) 523, 672
Psp124BI GAGCTC 2 cut(s) 324, 339
Psp5II RGGWCCY 2 cut(s) 523, 672
Psp6I CCWGG 5 cut(s) 90, 141, 350, 416, 699
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 5 cut(s) 90, 141, 350, 416, 699
PspN4I GGNNCC 8 cut(s) 123, 294, 356, 508, 524, 525, 600, 673
PspPI GGNCC 9 cut(s) 88, 98, 235, 292, 420, 507, 523, 598, 672
PspPPI RGGWCCY 2 cut(s) 523, 672
PspXI VCTCGAGB 1 cut(s) 332
PstI CTGCAG 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 160
RigI GGCCGGCC 2 cut(s) 483, 593
SacI GAGCTC 2 cut(s) 324, 339
SacII CCGCGG 1 cut(s) 660
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 1 cut(s) 724
Sau3AI GATC 4 cut(s) 192, 249, 279, 465
Sau96I GGNCC 9 cut(s) 88, 98, 235, 292, 420, 507, 523, 598, 672
ScrFI CCNGG 8 cut(s) 92, 143, 352, 418, 457, 458, 567, 701
SduI GDGCHC 2 cut(s) 324, 339
SetI ASST 9 cut(s) 80, 138, 162, 204, 228, 273, 324, 339, 493
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 161
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 332
Sfr303I CCGCGG 1 cut(s) 660
SgrAI CRCCGGYG 2 cut(s) 557, 605
SgrBI CCGCGG 1 cut(s) 660
SinI GGWCC 5 cut(s) 420, 507, 523, 598, 672
SlaI CTCGAG 1 cut(s) 332
SmaI CCCGGG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SseBI AGGCCT 1 cut(s) 314
SspDI GGCGCC 1 cut(s) 121
SstI GAGCTC 2 cut(s) 324, 339
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 8 cut(s) 90, 141, 350, 416, 455, 456, 565, 699
StyI CCWWGG 3 cut(s) 231, 309, 594
TaiI ACGT 1 cut(s) 273
TaqI TCGA 4 cut(s) 195, 333, 432, 444
TaqII GACCGA 1 cut(s) 437
TauI GCSGC 9 cut(s) 23, 26, 99, 119, 122, 187, 407, 410, 662
Tru1I TTAA 1 cut(s) 724
Tru9I TTAA 1 cut(s) 724
TscAI CASTG 2 cut(s) 523, 700
TseI GCWGC 5 cut(s) 151, 154, 157, 160, 619
TspDTI ATGAA 2 cut(s) 269, 316
TspGWI ACGGA 1 cut(s) 100
TspMI CCCGGG 1 cut(s) 456
TspRI CASTG 2 cut(s) 523, 700
VpaK11BI GGWCC 5 cut(s) 420, 507, 523, 598, 672
XagI CCTNNNNNAGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 332
XmaI CCCGGG 1 cut(s) 456
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.