Rw7G009280

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
8736769 .. 8739172
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009280.1

Sequence Viewer

Length: 732 bp
ATGGACAGCAACCCCAACGCCGCCGCCACCGCCACCGCCATTACCGCCCAGCACCAGCACCAGCACCAAGCCCAGTCCGCCACCTACCCTCCGGCCCAGGGCGGCCCGCCGTCCTCCGTCGCGGCGGCGCCCTTCCACCACCTGCTCCAGGCTCAGCAGCAGCAGCTGCAGATGTTCTGGAACTACCAGCGGCAGGAGATCGAGCAGGTCAACGACTTCAAGAACCACCAGCTCCCCTTGGCCCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCAGGATGATCTCAGCCGAGGCCCCCGTCCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACCATCCGCTCCTGGCTCCACGCCGAGGAGAACAAACGGCGCACTCTCCAGAAAAACGACATTGCCGCCGCCATTACCAGGACCGATATTTTCGATTTCCTCGTCGATATTGTCCCCCGGGATGAGATCAAGGACGAGGCCGGCCTCGGAGCTGTCGGCATGGTGGGGGCCACCGCCAGTGGGGTCCCCTACTACTACCCGCCGATTGGCCAGCCCGCCGGTGCGCCGGGAGGGATGATGATTGGGAGGCCGGCCATGGACCCCACGGGCGTTTATGCGCAGCCCCCGTCGCAGGCGTGGCAGTCGGTGTGGCAGACCGCGGCGGACGATGGGTCCTATGGGAGTGGAGGGAGCAGTGGCCAGGGCAATCTTGATGGCCAGAGTTGA
Functional Annotation

Protein Analysis

243

Amino Acids

26.27

Weight (kDa)

5.42

Isoelectric Point (pI)

55.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 69 - 140 9.9e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 77 - 140 1e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 150
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 279
Acc16I TGCGCA 1 cut(s) 624
Acc36I ACCTGC 2 cut(s) 150, 196
AccB1I GGYRCC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 354
AccII CGCG 2 cut(s) 122, 665
AcoI YGGCCR 4 cut(s) 553, 597, 703, 721
AcyI GRCGYC 2 cut(s) 128, 276
AfiI CCNNNNNNNGG 8 cut(s) 98, 148, 193, 370, 423, 525, 551, 637
AgsI TTSAA 1 cut(s) 220
AhdI GACNNNNNGTC 1 cut(s) 676
AjnI CCWGG 5 cut(s) 96, 147, 356, 422, 705
AluBI AGCT 5 cut(s) 166, 232, 328, 343, 497
AluI AGCT 5 cut(s) 166, 232, 328, 343, 497
Alw21I GWGCWC 2 cut(s) 330, 345
AlwNI CAGNNNCTG 1 cut(s) 166
Ama87I CYCGRG 2 cut(s) 338, 462
ApeKI GCWGC 5 cut(s) 157, 160, 163, 166, 625
AspLEI GCGC 4 cut(s) 130, 387, 571, 625
AspS9I GGNCC 9 cut(s) 94, 104, 241, 298, 426, 513, 529, 604, 678
AsuC2I CCSGG 3 cut(s) 463, 464, 573
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 2 cut(s) 338, 462
AvaII GGWCC 4 cut(s) 426, 529, 604, 678
BalI TGGCCA 3 cut(s) 555, 705, 723
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 330, 345
Bbv12I GWGCWC 2 cut(s) 330, 345
BbvI GCAGC 5 cut(s) 153, 169, 172, 175, 637
BccI CCATC 3 cut(s) 356, 668, 713
BceAI ACGGC 2 cut(s) 94, 398
BciT130I CCWGG 5 cut(s) 98, 149, 358, 424, 707
BcnI CCSGG 3 cut(s) 463, 464, 573
BfmI CTRYAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 2 cut(s) 150, 196
BlpI GCTNAGC 1 cut(s) 153
Bme1390I CCNGG 8 cut(s) 98, 149, 358, 424, 463, 464, 573, 707
Bme18I GGWCC 4 cut(s) 426, 529, 604, 678
BmeRI GACNNNNNGTC 1 cut(s) 676
BmeT110I CYCGRG 2 cut(s) 338, 462
BmgT120I GGNCC 9 cut(s) 94, 104, 241, 298, 426, 513, 529, 604, 678
BmiI GGNNCC 8 cut(s) 129, 300, 362, 514, 530, 531, 606, 679
BmrFI CCNGG 8 cut(s) 98, 149, 358, 424, 463, 464, 573, 707
BmrI ACTGGG 1 cut(s) 67
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 131, 377
Bpu1102I GCTNAGC 1 cut(s) 153
BpuMI CCSGG 3 cut(s) 463, 464, 573
BsaHI GRCGYC 2 cut(s) 128, 276
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 8 cut(s) 98, 148, 193, 370, 423, 525, 551, 637
Bse118I RCCGGY 3 cut(s) 485, 563, 595
Bse1I ACTGG 2 cut(s) 73, 522
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 5 cut(s) 98, 149, 358, 424, 707
BseGI GGATG 5 cut(s) 288, 333, 348, 472, 585
BseLI CCNNNNNNNGG 8 cut(s) 98, 148, 193, 370, 423, 525, 551, 637
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 167, 303
BseNI ACTGG 2 cut(s) 73, 522
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 5 cut(s) 153, 169, 172, 175, 637
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 2 cut(s) 122, 665
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 2 cut(s) 330, 345
BsiHKCI CYCGRG 2 cut(s) 338, 462
BsiSI CCGG 6 cut(s) 92, 463, 486, 564, 572, 596
BslFI GGGAC 2 cut(s) 443, 515
BslI CCNNNNNNNGG 8 cut(s) 98, 148, 193, 370, 423, 525, 551, 637
BsmFI GGGAC 2 cut(s) 443, 515
BsoBI CYCGRG 2 cut(s) 338, 462
Bsp1286I GDGCHC 2 cut(s) 330, 345
Bsp143I GATC 4 cut(s) 198, 255, 285, 471
Bsp1720I GCTNAGC 1 cut(s) 153
Bsp19I CCATGG 1 cut(s) 600
BspCNI CTCAG 2 cut(s) 166, 302
BspFNI CGCG 2 cut(s) 122, 665
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 8 cut(s) 129, 300, 362, 514, 530, 531, 606, 679
BspMAI CTGCAG 1 cut(s) 171
BspMI ACCTGC 2 cut(s) 150, 196
BspQI GCTCTTC 1 cut(s) 335
BspT107I GGYRCC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 3 cut(s) 485, 563, 595
BsrI ACTGG 2 cut(s) 73, 522
BssAI RCCGGY 3 cut(s) 485, 563, 595
BssMI GATC 4 cut(s) 198, 255, 285, 471
BssNI GRCGYC 2 cut(s) 128, 276
BssT1I CCWWGG 3 cut(s) 237, 315, 600
Bst2UI CCWGG 5 cut(s) 98, 149, 358, 424, 707
Bst6I CTCTTC 1 cut(s) 335
BstACI GRCGYC 2 cut(s) 128, 276
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 9 cut(s) 107, 244, 322, 326, 487, 557, 561, 597, 639
BstDEI CTNAG 2 cut(s) 153, 289
BstDSI CCRYGG 3 cut(s) 600, 609, 663
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 5 cut(s) 288, 333, 348, 472, 585
BstFNI CGCG 2 cut(s) 122, 665
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 4 cut(s) 130, 387, 571, 625
BstKTI GATC 4 cut(s) 201, 258, 288, 474
BstMBI GATC 4 cut(s) 198, 255, 285, 471
BstMWI GCNNNNNNNGC 7 cut(s) 29, 44, 77, 163, 166, 634, 643
BstNI CCWGG 5 cut(s) 98, 149, 358, 424, 707
BstSCI CCNGG 8 cut(s) 96, 147, 356, 422, 461, 462, 571, 705
BstSFI CTRYAG 1 cut(s) 167
BstUI CGCG 2 cut(s) 122, 665
BstV1I GCAGC 5 cut(s) 153, 169, 172, 175, 637
BtgI CCRYGG 3 cut(s) 600, 609, 663
BtsCI GGATG 5 cut(s) 288, 333, 348, 472, 585
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 2 cut(s) 529, 706
BveI ACCTGC 2 cut(s) 150, 196
Cac8I GCNNGC 9 cut(s) 107, 244, 322, 326, 487, 557, 561, 597, 639
CaiI CAGNNNCTG 1 cut(s) 166
CciI TCATGA 1 cut(s) 258
CfoI GCGC 4 cut(s) 130, 387, 571, 625
Cfr10I RCCGGY 3 cut(s) 485, 563, 595
Cfr13I GGNCC 9 cut(s) 94, 104, 241, 298, 426, 513, 529, 604, 678
Cfr42I CCGCGG 1 cut(s) 666
Cfr9I CCCGGG 1 cut(s) 462
CviAII CATG 3 cut(s) 259, 505, 601
DdeI CTNAG 2 cut(s) 153, 289
DinI GGCGCC 1 cut(s) 129
DpnI GATC 4 cut(s) 200, 257, 287, 473
DpnII GATC 4 cut(s) 198, 255, 285, 471
DrdI GACNNNNNNGTC 1 cut(s) 275
DriI GACNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 4 cut(s) 553, 597, 703, 721
Eam1104I CTCTTC 1 cut(s) 335
Eam1105I GACNNNNNGTC 1 cut(s) 676
EarI CTCTTC 1 cut(s) 335
EciI GGCGGA 2 cut(s) 67, 683
Ecl136II GAGCTC 2 cut(s) 328, 343
Eco130I CCWWGG 3 cut(s) 237, 315, 600
Eco147I AGGCCT 1 cut(s) 320
Eco24I GRGCYC 2 cut(s) 330, 345
Eco47I GGWCC 4 cut(s) 426, 529, 604, 678
Eco53kI GAGCTC 2 cut(s) 328, 343
Eco88I CYCGRG 2 cut(s) 338, 462
EcoICRI GAGCTC 2 cut(s) 328, 343
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoO109I RGGNCCY 3 cut(s) 298, 529, 678
EcoRII CCWGG 5 cut(s) 96, 147, 356, 422, 705
EcoT14I CCWWGG 3 cut(s) 237, 315, 600
EcoT38I GRGCYC 2 cut(s) 330, 345
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 3 cut(s) 237, 315, 600
FaeI CATG 3 cut(s) 262, 508, 604
FaiI YATR 5 cut(s) 260, 506, 602, 621, 684
FaqI GGGAC 2 cut(s) 443, 515
FatI CATG 3 cut(s) 258, 504, 600
FauI CCCGC 4 cut(s) 114, 251, 552, 568
FokI GGATG 5 cut(s) 295, 320, 335, 479, 592
FriOI GRGCYC 2 cut(s) 330, 345
FseI GGCCGGCC 2 cut(s) 489, 599
FspI TGCGCA 1 cut(s) 624
GlaI GCGC 4 cut(s) 129, 386, 570, 624
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 2 cut(s) 131, 377
HaeII RGCGCY 1 cut(s) 131
HapII CCGG 6 cut(s) 92, 463, 486, 564, 572, 596
HhaI GCGC 4 cut(s) 130, 387, 571, 625
Hin1I GRCGYC 2 cut(s) 128, 276
Hin1II CATG 3 cut(s) 262, 508, 604
Hin6I GCGC 4 cut(s) 128, 385, 569, 623
HinP1I GCGC 4 cut(s) 128, 385, 569, 623
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HpaII CCGG 6 cut(s) 92, 463, 486, 564, 572, 596
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 494
Hpy188III TCNNGA 7 cut(s) 178, 220, 250, 259, 280, 394, 716
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 4 cut(s) 122, 272, 452, 637
HpyAV CCTTC 2 cut(s) 142, 256
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 44, 77, 163, 166, 634, 643
HpyF3I CTNAG 2 cut(s) 153, 289
HpySE526I ACGT 1 cut(s) 276
Hsp92I GRCGYC 2 cut(s) 128, 276
Hsp92II CATG 3 cut(s) 262, 508, 604
HspAI GCGC 4 cut(s) 128, 385, 569, 623
KasI GGCGCC 1 cut(s) 127
KflI GGGWCCC 1 cut(s) 529
KroI GCCGGC 2 cut(s) 485, 595
KroNI GCCGGC 2 cut(s) 487, 597
KspI CCGCGG 1 cut(s) 666
Kzo9I GATC 4 cut(s) 198, 255, 285, 471
LguI GCTCTTC 1 cut(s) 335
LmnI GCTCC 6 cut(s) 150, 237, 359, 366, 494, 696
Lsp1109I GCAGC 5 cut(s) 153, 169, 172, 175, 637
LweI GCATC 1 cut(s) 255
MaeII ACGT 1 cut(s) 276
MalI GATC 4 cut(s) 200, 257, 287, 473
MbiI CCGCTC 1 cut(s) 354
MboI GATC 4 cut(s) 198, 255, 285, 471
MboII GAAGA 2 cut(s) 265, 322
MhlI GDGCHC 2 cut(s) 330, 345
MlsI TGGCCA 3 cut(s) 555, 705, 723
MluNI TGGCCA 3 cut(s) 555, 705, 723
Mly113I GGCGCC 1 cut(s) 128
Mox20I TGGCCA 3 cut(s) 555, 705, 723
MroNI GCCGGC 2 cut(s) 485, 595
MscI TGGCCA 3 cut(s) 555, 705, 723
Msp20I TGGCCA 3 cut(s) 555, 705, 723
MspA1I CMGCKG 3 cut(s) 166, 190, 665
MspI CCGG 6 cut(s) 92, 463, 486, 564, 572, 596
MspR9I CCNGG 8 cut(s) 98, 149, 358, 424, 463, 464, 573, 707
MvaI CCWGG 5 cut(s) 98, 149, 358, 424, 707
MvnI CGCG 2 cut(s) 122, 665
MwoI GCNNNNNNNGC 7 cut(s) 29, 44, 77, 163, 166, 634, 643
NaeI GCCGGC 2 cut(s) 487, 597
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 3 cut(s) 463, 464, 573
NcoI CCATGG 1 cut(s) 600
NdeII GATC 4 cut(s) 198, 255, 285, 471
NgoMIV GCCGGC 2 cut(s) 485, 595
NlaIII CATG 3 cut(s) 262, 508, 604
NlaIV GGNNCC 8 cut(s) 129, 300, 362, 514, 530, 531, 606, 679
NmeAIII GCCGAG 2 cut(s) 319, 394
NsbI TGCGCA 1 cut(s) 624
PaeR7I CTCGAG 1 cut(s) 338
PagI TCATGA 1 cut(s) 258
PaqCI CACCTGC 1 cut(s) 150
PasI CCCWGGG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PdiI GCCGGC 2 cut(s) 487, 597
PluTI GGCGCC 1 cut(s) 131
PpuMI RGGWCCY 2 cut(s) 529, 678
Psp124BI GAGCTC 2 cut(s) 330, 345
Psp5II RGGWCCY 2 cut(s) 529, 678
Psp6I CCWGG 5 cut(s) 96, 147, 356, 422, 705
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 5 cut(s) 96, 147, 356, 422, 705
PspN4I GGNNCC 8 cut(s) 129, 300, 362, 514, 530, 531, 606, 679
PspPI GGNCC 9 cut(s) 94, 104, 241, 298, 426, 513, 529, 604, 678
PspPPI RGGWCCY 2 cut(s) 529, 678
PspXI VCTCGAGB 1 cut(s) 338
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 166
RigI GGCCGGCC 2 cut(s) 489, 599
SacI GAGCTC 2 cut(s) 330, 345
SacII CCGCGG 1 cut(s) 666
SapI GCTCTTC 1 cut(s) 335
Sau3AI GATC 4 cut(s) 198, 255, 285, 471
Sau96I GGNCC 9 cut(s) 94, 104, 241, 298, 426, 513, 529, 604, 678
ScrFI CCNGG 8 cut(s) 98, 149, 358, 424, 463, 464, 573, 707
SduI GDGCHC 2 cut(s) 330, 345
SetI ASST 9 cut(s) 86, 144, 168, 210, 234, 279, 330, 345, 499
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 167
SfoI GGCGCC 1 cut(s) 129
Sfr274I CTCGAG 1 cut(s) 338
Sfr303I CCGCGG 1 cut(s) 666
SgrAI CRCCGGYG 1 cut(s) 563
SgrBI CCGCGG 1 cut(s) 666
SinI GGWCC 4 cut(s) 426, 529, 604, 678
SlaI CTCGAG 1 cut(s) 338
SmaI CCCGGG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SseBI AGGCCT 1 cut(s) 320
SspDI GGCGCC 1 cut(s) 127
SstI GAGCTC 2 cut(s) 330, 345
StuI AGGCCT 1 cut(s) 320
StyD4I CCNGG 8 cut(s) 96, 147, 356, 422, 461, 462, 571, 705
StyI CCWWGG 3 cut(s) 237, 315, 600
TaiI ACGT 1 cut(s) 279
TaqI TCGA 4 cut(s) 201, 339, 438, 450
TaqII GACCGA 1 cut(s) 443
TauI GCSGC 9 cut(s) 23, 26, 105, 125, 128, 193, 413, 416, 668
TscAI CASTG 2 cut(s) 529, 706
TseI GCWGC 5 cut(s) 157, 160, 163, 166, 625
TspDTI ATGAA 2 cut(s) 275, 322
TspGWI ACGGA 1 cut(s) 106
TspMI CCCGGG 1 cut(s) 462
TspRI CASTG 2 cut(s) 529, 706
VpaK11BI GGWCC 4 cut(s) 426, 529, 604, 678
XagI CCTNNNNNAGG 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 338
XmaI CCCGGG 1 cut(s) 462
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.