FvH4_5g08391

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
4870580 .. 4875169
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08391.t3

Sequence Viewer

Length: 768 bp
ATGGAAAACAACAACTCCAACTCCAACCCCGTCGCCGCCACCACCGTCCCAGCCGCCACCTACCCTCCCACCCAGCCCCCTCCGCCGCCGTCCTCCGTCGCGGCGCCGCCCTTCCACCACCTCCTCCAGGCGCAGCAGCAGCAGCTCCAGATGTTCTGGAACTACCAGCGCCACGAGATCGAGCAGGTCAACGACTTCAAGAACCACCAGCTCCCCCTGGCGCGCATCAAGAAGATCATGAAGGCCGACGAGGACGTCAGGATGATCTCAGCCGAGGCGCCCGTCCTGTTCGCCAAGGCATGCGAGCTCTTCATCCTCGAGCTAACCATCAGGTCATGGCTCCACGCCGAGGAGAACAAGCGCCGCACGCTCCAGAAAAACGACATTGCCGCCGCCATCACCCGCACTGATATTTTCGACTTCCTCGTCGATATTGTCCCCAGGGATGAGATCAAGGACGAGGCCGGCCTCGGCGGCGTCGCCATGGTGGGGGCCACCGCCAGCGGGGTCCCTTACTACTACCCGCCCATTGGCCAGCCGGCGGGGGCGCCGGGAGGGATGATGATCGGGAGGCCGGCCATGGATCCTACCGGAGTTTATGCGCAGCCGCCGTCGCAGGCGTGGCAGTCGGTGTGGCAGACGGCGGCGGATGATGTGTCGTATGGGAGTGGAGGGAGCAGTGGCCAGGGCAATCTTGATGGCCAGAGCAGGGCAAAAACAAGTCTTTTGTTGTTTCGGGTATTGATATCGATCCAACCTGAAACATGA
Functional Annotation

Protein Analysis

256

Amino Acids

27.82

Weight (kDa)

5.53

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 63 - 133 9.7e-18 Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF PF00808 70 - 133 1e-16 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 254, 425
AatII GACGTC 1 cut(s) 258
Acc16I TGCGCA 1 cut(s) 603
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 3 cut(s) 103, 277, 547
AccII CGCG 2 cut(s) 101, 223
AclWI GGATC 3 cut(s) 578, 591, 745
AcoI YGGCCR 4 cut(s) 532, 576, 682, 700
AcyI GRCGYC 5 cut(s) 104, 255, 278, 477, 548
AfiI CCNNNNNNNGG 7 cut(s) 127, 349, 489, 504, 530, 541, 709
AgsI TTSAA 1 cut(s) 199
AjnI CCWGG 4 cut(s) 126, 216, 440, 684
AluBI AGCT 4 cut(s) 145, 211, 307, 322
AluI AGCT 4 cut(s) 145, 211, 307, 322
Alw21I GWGCWC 1 cut(s) 309
AlwI GGATC 3 cut(s) 578, 591, 745
Ama87I CYCGRG 1 cut(s) 317
AoxI GGCC 9 cut(s) 243, 462, 466, 492, 532, 572, 576, 682, 700
ApeKI GCWGC 5 cut(s) 133, 136, 139, 142, 604
AspLEI GCGC 9 cut(s) 106, 133, 171, 223, 225, 280, 363, 550, 604
AspS9I GGNCC 2 cut(s) 492, 508
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 317
AvaII GGWCC 1 cut(s) 508
BalI TGGCCA 3 cut(s) 534, 684, 702
BamHI GGATCC 1 cut(s) 583
BanI GGYRCC 3 cut(s) 103, 277, 547
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 5 cut(s) 145, 148, 151, 154, 616
BccI CCATC 3 cut(s) 335, 404, 692
BceAI ACGGC 3 cut(s) 73, 595, 657
BciT130I CCWGG 4 cut(s) 128, 218, 442, 686
BcnI CCSGG 1 cut(s) 552
BfoI RGCGCY 5 cut(s) 107, 172, 281, 364, 551
BfuAI ACCTGC 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 474
Bme1390I CCNGG 5 cut(s) 128, 218, 442, 552, 686
Bme18I GGWCC 1 cut(s) 508
BmeT110I CYCGRG 1 cut(s) 317
BmgT120I GGNCC 2 cut(s) 492, 508
BmiI GGNNCC 8 cut(s) 105, 279, 341, 493, 509, 510, 549, 585
BmrFI CCNGG 5 cut(s) 128, 218, 442, 552, 686
BmsI GCATC 1 cut(s) 234
BpmI CTGGAG 3 cut(s) 110, 131, 356
BpuMI CCSGG 1 cut(s) 552
Bsa29I ATCGAT 1 cut(s) 749
BsaBI GATNNNNATC 2 cut(s) 563, 749
BsaHI GRCGYC 5 cut(s) 104, 255, 278, 477, 548
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 5 cut(s) 5, 29, 35, 49, 79
Bsc4I CCNNNNNNNGG 7 cut(s) 127, 349, 489, 504, 530, 541, 709
Bse118I RCCGGY 3 cut(s) 464, 538, 574
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 2 cut(s) 563, 749
BseBI CCWGG 4 cut(s) 128, 218, 442, 686
BseCI ATCGAT 1 cut(s) 749
BseGI GGATG 5 cut(s) 267, 312, 451, 564, 655
BseJI GATNNNNATC 2 cut(s) 563, 749
BseLI CCNNNNNNNGG 7 cut(s) 127, 349, 489, 504, 530, 541, 709
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 282
BsePI GCGCGC 1 cut(s) 221
BseRI GAGGAG 2 cut(s) 113, 365
BseXI GCAGC 5 cut(s) 145, 148, 151, 154, 616
BseYI CCCAGC 2 cut(s) 49, 72
Bsh1236I CGCG 2 cut(s) 101, 223
BshFI GGCC 9 cut(s) 245, 464, 468, 494, 534, 574, 578, 684, 702
BshNI GGYRCC 3 cut(s) 103, 277, 547
BshVI ATCGAT 1 cut(s) 749
BsiHKAI GWGCWC 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 317
BsiSI CCGG 5 cut(s) 465, 539, 551, 575, 591
BslFI GGGAC 3 cut(s) 32, 422, 494
BslI CCNNNNNNNGG 7 cut(s) 127, 349, 489, 504, 530, 541, 709
BsmFI GGGAC 3 cut(s) 32, 422, 494
BsnI GGCC 9 cut(s) 245, 464, 468, 494, 534, 574, 578, 684, 702
BsoBI CYCGRG 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
Bsp19I CCATGG 2 cut(s) 483, 579
BspANI GGCC 9 cut(s) 245, 464, 468, 494, 534, 574, 578, 684, 702
BspCNI CTCAG 1 cut(s) 281
BspDI ATCGAT 1 cut(s) 749
BspFNI CGCG 2 cut(s) 101, 223
BspHI TCATGA 1 cut(s) 237
BspLI GGNNCC 8 cut(s) 105, 279, 341, 493, 509, 510, 549, 585
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 3 cut(s) 578, 591, 745
BspQI GCTCTTC 1 cut(s) 314
BspT107I GGYRCC 3 cut(s) 103, 277, 547
BsrDI GCAATG 1 cut(s) 384
BsrFI RCCGGY 3 cut(s) 464, 538, 574
BssAI RCCGGY 3 cut(s) 464, 538, 574
BssHII GCGCGC 1 cut(s) 221
BssMI GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
BssNI GRCGYC 5 cut(s) 104, 255, 278, 477, 548
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 3 cut(s) 294, 483, 579
Bst2BI CACGAG 1 cut(s) 173
Bst2UI CCWGG 4 cut(s) 128, 218, 442, 686
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 1 cut(s) 314
BstACI GRCGYC 5 cut(s) 104, 255, 278, 477, 548
BstDEI CTNAG 1 cut(s) 268
BstDSI CCRYGG 2 cut(s) 483, 579
BstENI CCTNNNNNAGG 1 cut(s) 125
BstF5I GGATG 5 cut(s) 267, 312, 451, 564, 655
BstFNI CGCG 2 cut(s) 101, 223
BstH2I RGCGCY 5 cut(s) 107, 172, 281, 364, 551
BstHHI GCGC 9 cut(s) 106, 133, 171, 223, 225, 280, 363, 550, 604
BstKTI GATC 7 cut(s) 180, 237, 267, 453, 567, 586, 753
BstMBI GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
BstMWI GCNNNNNNNGC 7 cut(s) 82, 139, 142, 367, 474, 613, 622
BstNI CCWGG 4 cut(s) 128, 218, 442, 686
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 5 cut(s) 126, 216, 440, 550, 684
BstUI CGCG 2 cut(s) 101, 223
BstV1I GCAGC 5 cut(s) 145, 148, 151, 154, 616
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
Bsu15I ATCGAT 1 cut(s) 749
BsuRI GGCC 9 cut(s) 245, 464, 468, 494, 534, 574, 578, 684, 702
BsuTUI ATCGAT 1 cut(s) 749
BtgI CCRYGG 2 cut(s) 483, 579
BtsCI GGATG 5 cut(s) 267, 312, 451, 564, 655
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 405, 685
BveI ACCTGC 1 cut(s) 175
CciI TCATGA 1 cut(s) 237
CfoI GCGC 9 cut(s) 106, 133, 171, 223, 225, 280, 363, 550, 604
Cfr10I RCCGGY 3 cut(s) 464, 538, 574
Cfr13I GGNCC 2 cut(s) 492, 508
ClaI ATCGAT 1 cut(s) 749
CseI GACGC 1 cut(s) 466
CviAII CATG 6 cut(s) 238, 300, 336, 484, 580, 765
DdeI CTNAG 1 cut(s) 268
DinI GGCGCC 3 cut(s) 105, 279, 549
DpnI GATC 7 cut(s) 179, 236, 266, 452, 566, 585, 752
DpnII GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
DrdI GACNNNNNNGTC 2 cut(s) 254, 425
DseDI GACNNNNNNGTC 2 cut(s) 254, 425
EaeI YGGCCR 4 cut(s) 532, 576, 682, 700
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
EciI GGCGGA 2 cut(s) 72, 662
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 3 cut(s) 294, 483, 579
Eco24I GRGCYC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 1 cut(s) 307
Eco88I CYCGRG 1 cut(s) 317
EcoICRI GAGCTC 1 cut(s) 307
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 508
EcoRII CCWGG 4 cut(s) 126, 216, 440, 684
EcoRV GATATC 1 cut(s) 747
EcoT14I CCWWGG 3 cut(s) 294, 483, 579
EcoT38I GRGCYC 1 cut(s) 309
EgeI GGCGCC 3 cut(s) 105, 279, 549
EheI GGCGCC 3 cut(s) 105, 279, 549
ErhI CCWWGG 3 cut(s) 294, 483, 579
FaeI CATG 6 cut(s) 241, 303, 339, 487, 583, 768
FaiI YATR 8 cut(s) 239, 301, 337, 485, 581, 600, 663, 766
FaqI GGGAC 3 cut(s) 32, 422, 494
FatI CATG 6 cut(s) 237, 299, 335, 483, 579, 764
FauI CCCGC 4 cut(s) 410, 497, 531, 535
FokI GGATG 5 cut(s) 274, 299, 458, 571, 662
FriOI GRGCYC 1 cut(s) 309
FseI GGCCGGCC 2 cut(s) 468, 578
FspI TGCGCA 1 cut(s) 603
GlaI GCGC 9 cut(s) 105, 132, 170, 222, 224, 279, 362, 549, 603
GsaI CCCAGC 2 cut(s) 53, 76
GsuI CTGGAG 3 cut(s) 110, 131, 356
HaeII RGCGCY 5 cut(s) 107, 172, 281, 364, 551
HaeIII GGCC 9 cut(s) 245, 464, 468, 494, 534, 574, 578, 684, 702
HapII CCGG 5 cut(s) 465, 539, 551, 575, 591
HgaI GACGC 1 cut(s) 466
HhaI GCGC 9 cut(s) 106, 133, 171, 223, 225, 280, 363, 550, 604
Hin1I GRCGYC 5 cut(s) 104, 255, 278, 477, 548
Hin1II CATG 6 cut(s) 241, 303, 339, 487, 583, 768
Hin6I GCGC 9 cut(s) 104, 131, 169, 221, 223, 278, 361, 548, 602
HinP1I GCGC 9 cut(s) 104, 131, 169, 221, 223, 278, 361, 548, 602
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HpaII CCGG 5 cut(s) 465, 539, 551, 575, 591
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 190
Hpy188III TCNNGA 9 cut(s) 148, 157, 199, 229, 238, 259, 373, 568, 695
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 6 cut(s) 35, 101, 251, 431, 482, 616
HpyAV CCTTC 2 cut(s) 121, 235
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 255
HpyF10VI GCNNNNNNNGC 7 cut(s) 82, 139, 142, 367, 474, 613, 622
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 255
Hsp92I GRCGYC 5 cut(s) 104, 255, 278, 477, 548
Hsp92II CATG 6 cut(s) 241, 303, 339, 487, 583, 768
HspAI GCGC 9 cut(s) 104, 131, 169, 221, 223, 278, 361, 548, 602
KasI GGCGCC 3 cut(s) 103, 277, 547
KflI GGGWCCC 1 cut(s) 508
KroI GCCGGC 3 cut(s) 464, 538, 574
KroNI GCCGGC 3 cut(s) 466, 540, 576
Kzo9I GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 5 cut(s) 150, 216, 345, 375, 675
Lsp1109I GCAGC 5 cut(s) 145, 148, 151, 154, 616
LweI GCATC 1 cut(s) 234
MaeII ACGT 1 cut(s) 255
MalI GATC 7 cut(s) 179, 236, 266, 452, 566, 585, 752
MboI GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
MboII GAAGA 2 cut(s) 244, 301
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 309
MlsI TGGCCA 3 cut(s) 534, 684, 702
MluNI TGGCCA 3 cut(s) 534, 684, 702
Mly113I GGCGCC 3 cut(s) 104, 278, 548
MmeI TCCRAC 2 cut(s) 42, 48
Mox20I TGGCCA 3 cut(s) 534, 684, 702
MroNI GCCGGC 3 cut(s) 464, 538, 574
MscI TGGCCA 3 cut(s) 534, 684, 702
Msp20I TGGCCA 3 cut(s) 534, 684, 702
MspA1I CMGCKG 1 cut(s) 504
MspI CCGG 5 cut(s) 465, 539, 551, 575, 591
MspR9I CCNGG 5 cut(s) 128, 218, 442, 552, 686
MvaI CCWGG 4 cut(s) 128, 218, 442, 686
MvnI CGCG 2 cut(s) 101, 223
MwoI GCNNNNNNNGC 7 cut(s) 82, 139, 142, 367, 474, 613, 622
NaeI GCCGGC 3 cut(s) 466, 540, 576
NarI GGCGCC 3 cut(s) 104, 278, 548
NciI CCSGG 1 cut(s) 552
NcoI CCATGG 2 cut(s) 483, 579
NdeII GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
NgoMIV GCCGGC 3 cut(s) 464, 538, 574
NlaIII CATG 6 cut(s) 241, 303, 339, 487, 583, 768
NlaIV GGNNCC 8 cut(s) 105, 279, 341, 493, 509, 510, 549, 585
NmeAIII GCCGAG 3 cut(s) 298, 373, 450
NsbI TGCGCA 1 cut(s) 603
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PaeR7I CTCGAG 1 cut(s) 317
PagI TCATGA 1 cut(s) 237
PasI CCCWGGG 1 cut(s) 441
PauI GCGCGC 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PdiI GCCGGC 3 cut(s) 466, 540, 576
PluTI GGCGCC 3 cut(s) 107, 281, 551
PpuMI RGGWCCY 1 cut(s) 508
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 508
Psp6I CCWGG 4 cut(s) 126, 216, 440, 684
PspFI CCCAGC 2 cut(s) 49, 72
PspGI CCWGG 4 cut(s) 126, 216, 440, 684
PspN4I GGNNCC 8 cut(s) 105, 279, 341, 493, 509, 510, 549, 585
PspPI GGNCC 2 cut(s) 492, 508
PspPPI RGGWCCY 1 cut(s) 508
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 1 cut(s) 583
PteI GCGCGC 1 cut(s) 221
RigI GGCCGGCC 2 cut(s) 468, 578
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 314
Sau3AI GATC 7 cut(s) 177, 234, 264, 450, 564, 583, 750
Sau96I GGNCC 2 cut(s) 492, 508
ScrFI CCNGG 5 cut(s) 128, 218, 442, 552, 686
SduI GDGCHC 1 cut(s) 309
SfaNI GCATC 1 cut(s) 234
SfoI GGCGCC 3 cut(s) 105, 279, 549
Sfr274I CTCGAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 508
SlaI CTCGAG 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
SphI GCATGC 1 cut(s) 303
SspDI GGCGCC 3 cut(s) 103, 277, 547
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 5 cut(s) 126, 216, 440, 550, 684
StyI CCWWGG 3 cut(s) 294, 483, 579
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 258
TaqI TCGA 5 cut(s) 180, 318, 417, 429, 749
TscAI CASTG 2 cut(s) 412, 685
TseI GCWGC 5 cut(s) 133, 136, 139, 142, 604
TspDTI ATGAA 2 cut(s) 254, 301
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 2 cut(s) 412, 685
VpaK11BI GGWCC 1 cut(s) 508
XagI CCTNNNNNAGG 1 cut(s) 125
XceI RCATGY 1 cut(s) 303
XhoI CTCGAG 1 cut(s) 317
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.