Rmu_sc0004886.1_g000006

Nuclear transcription factor Y subunit

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004886.1
Physical Location & Seq
Forward (+)
31946 .. 33993
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004886.1_g000006.1.cds

Sequence Viewer

Length: 783 bp
atggacaacaaccccaacgccgccgccaccgccaccgccattaccgcccagcaccagcaccaagcccagtccgccacctaccctccggcccagggcggcccgccgtcctccgtcgcggcggcgcccttccaccacctgctccaggctcagcagcagcagctgcagatgttctggaactaccagcggcaggagatcgagcaggcccagcagcagcagctgcagatgttctggaactaccagcggcaggagatcgagcaggtcaacgacttcaagaaccaccagctccccttggcccgcatcaagaagatcatgaaggccgacgaggacgtcaggatgatctcagccgaggcccccgtcctgttcgccaaggcctgcgagctcttcatcctcgagctcaccatccgctcctggctccacgccgaggagaacaaacggcgcactctccagaaaaacgacattgccgccgccattaccaggaccgatattttcgatttcctcgtcgatattgtcccccgggatgagatcaaggacgaggccggactcggagctgtcggcatggtggggaccaccgccagtggggtcccctactactacccgccgattggccagcccgccggtgcgccgggagggatgatgattgggaggccggccatggaccccaccggcgtttatgcgcagcccccgtcgcaggcgtggcagtcggtgtggcagaccgcggcggacgatgggtcctatgggagtggagggagcagtggccagggcaatcttgatggccagagttaa
Functional Annotation

Protein Analysis

260

Amino Acids

28.54

Weight (kDa)

5.18

Isoelectric Point (pI)

60.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 144
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 1 cut(s) 330
Acc16I TGCGCA 1 cut(s) 675
Acc36I ACCTGC 2 cut(s) 144, 247
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 405
AccII CGCG 2 cut(s) 116, 716
AcoI YGGCCR 4 cut(s) 604, 648, 754, 772
AcyI GRCGYC 2 cut(s) 122, 327
AfiI CCNNNNNNNGG 9 cut(s) 92, 142, 187, 244, 421, 474, 576, 602, 688
AgsI TTSAA 1 cut(s) 271
AhdI GACNNNNNGTC 1 cut(s) 727
AjnI CCWGG 5 cut(s) 90, 141, 407, 473, 756
AluBI AGCT 6 cut(s) 160, 217, 283, 379, 394, 548
AluI AGCT 6 cut(s) 160, 217, 283, 379, 394, 548
Alw21I GWGCWC 2 cut(s) 381, 396
AlwNI CAGNNNCTG 2 cut(s) 160, 217
Ama87I CYCGRG 2 cut(s) 389, 513
ApeKI GCWGC 9 cut(s) 151, 154, 157, 160, 208, 211, 214, 217, 676
AspLEI GCGC 4 cut(s) 124, 438, 622, 676
AsuC2I CCSGG 3 cut(s) 514, 515, 624
AsuHPI GGTGA 1 cut(s) 388
AvaI CYCGRG 2 cut(s) 389, 513
AvaII GGWCC 5 cut(s) 477, 564, 580, 655, 729
BalI TGGCCA 3 cut(s) 606, 756, 774
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 2 cut(s) 381, 396
Bbv12I GWGCWC 2 cut(s) 381, 396
BbvI GCAGC 9 cut(s) 147, 163, 166, 169, 204, 220, 223, 226, 688
BccI CCATC 3 cut(s) 407, 719, 764
BceAI ACGGC 2 cut(s) 88, 449
BciT130I CCWGG 5 cut(s) 92, 143, 409, 475, 758
BcnI CCSGG 3 cut(s) 514, 515, 624
BfmI CTRYAG 2 cut(s) 161, 218
BfoI RGCGCY 1 cut(s) 125
BfuAI ACCTGC 2 cut(s) 144, 247
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 8 cut(s) 92, 143, 409, 475, 514, 515, 624, 758
Bme18I GGWCC 5 cut(s) 477, 564, 580, 655, 729
BmeRI GACNNNNNGTC 1 cut(s) 727
BmeT110I CYCGRG 2 cut(s) 389, 513
BmiI GGNNCC 8 cut(s) 123, 351, 413, 565, 581, 582, 657, 730
BmrFI CCNGG 8 cut(s) 92, 143, 409, 475, 514, 515, 624, 758
BmrI ACTGGG 1 cut(s) 61
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 61
BpmI CTGGAG 2 cut(s) 125, 428
Bpu1102I GCTNAGC 1 cut(s) 147
BpuMI CCSGG 3 cut(s) 514, 515, 624
BsaHI GRCGYC 2 cut(s) 122, 327
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 9 cut(s) 92, 142, 187, 244, 421, 474, 576, 602, 688
Bse118I RCCGGY 3 cut(s) 614, 646, 662
Bse1I ACTGG 2 cut(s) 67, 573
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 5 cut(s) 92, 143, 409, 475, 758
BseGI GGATG 5 cut(s) 339, 384, 399, 523, 636
BseLI CCNNNNNNNGG 9 cut(s) 92, 142, 187, 244, 421, 474, 576, 602, 688
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 2 cut(s) 161, 354
BseNI ACTGG 2 cut(s) 67, 573
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 9 cut(s) 147, 163, 166, 169, 204, 220, 223, 226, 688
BseYI CCCAGC 2 cut(s) 48, 204
Bsh1236I CGCG 2 cut(s) 116, 716
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 381, 396
BsiHKCI CYCGRG 2 cut(s) 389, 513
BsiSI CCGG 7 cut(s) 86, 514, 537, 615, 623, 647, 663
BslFI GGGAC 3 cut(s) 494, 566, 577
BslI CCNNNNNNNGG 9 cut(s) 92, 142, 187, 244, 421, 474, 576, 602, 688
BsmFI GGGAC 3 cut(s) 494, 566, 577
BsoBI CYCGRG 2 cut(s) 389, 513
Bsp1286I GDGCHC 2 cut(s) 381, 396
Bsp143I GATC 5 cut(s) 192, 249, 306, 336, 522
Bsp1720I GCTNAGC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 651
BspCNI CTCAG 2 cut(s) 160, 353
BspFNI CGCG 2 cut(s) 116, 716
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 8 cut(s) 123, 351, 413, 565, 581, 582, 657, 730
BspMAI CTGCAG 2 cut(s) 165, 222
BspMI ACCTGC 2 cut(s) 144, 247
BspQI GCTCTTC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 3 cut(s) 614, 646, 662
BsrI ACTGG 2 cut(s) 67, 573
BssAI RCCGGY 3 cut(s) 614, 646, 662
BssMI GATC 5 cut(s) 192, 249, 306, 336, 522
BssNI GRCGYC 2 cut(s) 122, 327
BssT1I CCWWGG 3 cut(s) 288, 366, 651
Bst2UI CCWGG 5 cut(s) 92, 143, 409, 475, 758
Bst6I CTCTTC 1 cut(s) 386
BstACI GRCGYC 2 cut(s) 122, 327
BstAPI GCANNNNNTGC 2 cut(s) 160, 217
BstC8I GCNNGC 9 cut(s) 101, 201, 295, 373, 377, 608, 612, 648, 690
BstDEI CTNAG 2 cut(s) 147, 340
BstDSI CCRYGG 2 cut(s) 651, 714
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 339, 384, 399, 523, 636
BstFNI CGCG 2 cut(s) 116, 716
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 4 cut(s) 124, 438, 622, 676
BstKTI GATC 5 cut(s) 195, 252, 309, 339, 525
BstMBI GATC 5 cut(s) 192, 249, 306, 336, 522
BstNI CCWGG 5 cut(s) 92, 143, 409, 475, 758
BstSCI CCNGG 8 cut(s) 90, 141, 407, 473, 512, 513, 622, 756
BstSFI CTRYAG 2 cut(s) 161, 218
BstUI CGCG 2 cut(s) 116, 716
BstV1I GCAGC 9 cut(s) 147, 163, 166, 169, 204, 220, 223, 226, 688
BtgI CCRYGG 2 cut(s) 651, 714
BtsCI GGATG 5 cut(s) 339, 384, 399, 523, 636
BtsI GCAGTG 1 cut(s) 757
BtsIMutI CAGTG 2 cut(s) 580, 757
BveI ACCTGC 2 cut(s) 144, 247
Cac8I GCNNGC 9 cut(s) 101, 201, 295, 373, 377, 608, 612, 648, 690
CaiI CAGNNNCTG 2 cut(s) 160, 217
CciI TCATGA 1 cut(s) 309
CfoI GCGC 4 cut(s) 124, 438, 622, 676
Cfr10I RCCGGY 3 cut(s) 614, 646, 662
Cfr42I CCGCGG 1 cut(s) 717
Cfr9I CCCGGG 1 cut(s) 513
CviAII CATG 3 cut(s) 310, 556, 652
DdeI CTNAG 2 cut(s) 147, 340
DinI GGCGCC 1 cut(s) 123
DpnI GATC 5 cut(s) 194, 251, 308, 338, 524
DpnII GATC 5 cut(s) 192, 249, 306, 336, 522
DrdI GACNNNNNNGTC 1 cut(s) 326
DriI GACNNNNNGTC 1 cut(s) 727
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 4 cut(s) 604, 648, 754, 772
Eam1104I CTCTTC 1 cut(s) 386
Eam1105I GACNNNNNGTC 1 cut(s) 727
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 2 cut(s) 61, 734
Ecl136II GAGCTC 2 cut(s) 379, 394
Eco130I CCWWGG 3 cut(s) 288, 366, 651
Eco147I AGGCCT 1 cut(s) 371
Eco24I GRGCYC 2 cut(s) 381, 396
Eco47I GGWCC 5 cut(s) 477, 564, 580, 655, 729
Eco53kI GAGCTC 2 cut(s) 379, 394
Eco88I CYCGRG 2 cut(s) 389, 513
EcoICRI GAGCTC 2 cut(s) 379, 394
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 3 cut(s) 349, 580, 729
EcoRII CCWGG 5 cut(s) 90, 141, 407, 473, 756
EcoT14I CCWWGG 3 cut(s) 288, 366, 651
EcoT38I GRGCYC 2 cut(s) 381, 396
EgeI GGCGCC 1 cut(s) 123
EheI GGCGCC 1 cut(s) 123
ErhI CCWWGG 3 cut(s) 288, 366, 651
FaeI CATG 3 cut(s) 313, 559, 655
FaiI YATR 5 cut(s) 311, 557, 653, 672, 735
FaqI GGGAC 3 cut(s) 494, 566, 577
FatI CATG 3 cut(s) 309, 555, 651
FauI CCCGC 4 cut(s) 108, 302, 603, 619
FokI GGATG 5 cut(s) 346, 371, 386, 530, 643
FriOI GRGCYC 2 cut(s) 381, 396
FseI GGCCGGCC 1 cut(s) 650
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 4 cut(s) 123, 437, 621, 675
GsaI CCCAGC 2 cut(s) 52, 208
GsuI CTGGAG 2 cut(s) 125, 428
HaeII RGCGCY 1 cut(s) 125
HapII CCGG 7 cut(s) 86, 514, 537, 615, 623, 647, 663
HhaI GCGC 4 cut(s) 124, 438, 622, 676
Hin1I GRCGYC 2 cut(s) 122, 327
Hin1II CATG 3 cut(s) 313, 559, 655
Hin6I GCGC 4 cut(s) 122, 436, 620, 674
HinP1I GCGC 4 cut(s) 122, 436, 620, 674
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 540
HpaII CCGG 7 cut(s) 86, 514, 537, 615, 623, 647, 663
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 1 cut(s) 545
Hpy188III TCNNGA 8 cut(s) 172, 229, 271, 301, 310, 331, 445, 767
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 4 cut(s) 116, 323, 503, 688
HpyAV CCTTC 2 cut(s) 136, 307
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 163, 220
HpyF3I CTNAG 2 cut(s) 147, 340
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 2 cut(s) 122, 327
Hsp92II CATG 3 cut(s) 313, 559, 655
HspAI GCGC 4 cut(s) 122, 436, 620, 674
KasI GGCGCC 1 cut(s) 121
KflI GGGWCCC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
KspI CCGCGG 1 cut(s) 717
Kzo9I GATC 5 cut(s) 192, 249, 306, 336, 522
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 6 cut(s) 144, 288, 410, 417, 545, 747
Lsp1109I GCAGC 9 cut(s) 147, 163, 166, 169, 204, 220, 223, 226, 688
LweI GCATC 1 cut(s) 306
MaeII ACGT 1 cut(s) 327
MalI GATC 5 cut(s) 194, 251, 308, 338, 524
MbiI CCGCTC 1 cut(s) 405
MboI GATC 5 cut(s) 192, 249, 306, 336, 522
MboII GAAGA 2 cut(s) 316, 373
MhlI GDGCHC 2 cut(s) 381, 396
MlsI TGGCCA 3 cut(s) 606, 756, 774
MluNI TGGCCA 3 cut(s) 606, 756, 774
Mly113I GGCGCC 1 cut(s) 122
MlyI GAGTC 1 cut(s) 534
Mox20I TGGCCA 3 cut(s) 606, 756, 774
MroNI GCCGGC 1 cut(s) 646
MscI TGGCCA 3 cut(s) 606, 756, 774
MseI TTAA 1 cut(s) 781
Msp20I TGGCCA 3 cut(s) 606, 756, 774
MspA1I CMGCKG 5 cut(s) 160, 184, 217, 241, 716
MspI CCGG 7 cut(s) 86, 514, 537, 615, 623, 647, 663
MspR9I CCNGG 8 cut(s) 92, 143, 409, 475, 514, 515, 624, 758
MvaI CCWGG 5 cut(s) 92, 143, 409, 475, 758
MvnI CGCG 2 cut(s) 116, 716
NaeI GCCGGC 1 cut(s) 648
NarI GGCGCC 1 cut(s) 122
NciI CCSGG 3 cut(s) 514, 515, 624
NcoI CCATGG 1 cut(s) 651
NdeII GATC 5 cut(s) 192, 249, 306, 336, 522
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 3 cut(s) 313, 559, 655
NlaIV GGNNCC 8 cut(s) 123, 351, 413, 565, 581, 582, 657, 730
NmeAIII GCCGAG 2 cut(s) 370, 445
NsbI TGCGCA 1 cut(s) 675
PaeR7I CTCGAG 1 cut(s) 389
PagI TCATGA 1 cut(s) 309
PaqCI CACCTGC 1 cut(s) 144
PasI CCCWGGG 1 cut(s) 91
PceI AGGCCT 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 495
PdiI GCCGGC 1 cut(s) 648
PleI GAGTC 1 cut(s) 534
PluTI GGCGCC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 534
PpuMI RGGWCCY 2 cut(s) 580, 729
Psp124BI GAGCTC 2 cut(s) 381, 396
Psp5II RGGWCCY 2 cut(s) 580, 729
Psp6I CCWGG 5 cut(s) 90, 141, 407, 473, 756
PspFI CCCAGC 2 cut(s) 48, 204
PspGI CCWGG 5 cut(s) 90, 141, 407, 473, 756
PspN4I GGNNCC 8 cut(s) 123, 351, 413, 565, 581, 582, 657, 730
PspPPI RGGWCCY 2 cut(s) 580, 729
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 2 cut(s) 165, 222
PstNI CAGNNNCTG 2 cut(s) 160, 217
PvuII CAGCTG 2 cut(s) 160, 217
RigI GGCCGGCC 1 cut(s) 650
SacI GAGCTC 2 cut(s) 381, 396
SacII CCGCGG 1 cut(s) 717
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 1 cut(s) 781
Sau3AI GATC 5 cut(s) 192, 249, 306, 336, 522
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 8 cut(s) 92, 143, 409, 475, 514, 515, 624, 758
SduI GDGCHC 2 cut(s) 381, 396
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 2 cut(s) 161, 218
SfoI GGCGCC 1 cut(s) 123
Sfr274I CTCGAG 1 cut(s) 389
Sfr303I CCGCGG 1 cut(s) 717
SgrAI CRCCGGYG 2 cut(s) 614, 662
SgrBI CCGCGG 1 cut(s) 717
SinI GGWCC 5 cut(s) 477, 564, 580, 655, 729
SlaI CTCGAG 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SseBI AGGCCT 1 cut(s) 371
SspDI GGCGCC 1 cut(s) 121
SstI GAGCTC 2 cut(s) 381, 396
StuI AGGCCT 1 cut(s) 371
StyD4I CCNGG 8 cut(s) 90, 141, 407, 473, 512, 513, 622, 756
StyI CCWWGG 3 cut(s) 288, 366, 651
TaiI ACGT 1 cut(s) 330
TaqI TCGA 5 cut(s) 195, 252, 390, 489, 501
TaqII GACCGA 1 cut(s) 494
Tru1I TTAA 1 cut(s) 781
Tru9I TTAA 1 cut(s) 781
TscAI CASTG 2 cut(s) 580, 757
TseI GCWGC 9 cut(s) 151, 154, 157, 160, 208, 211, 214, 217, 676
TspDTI ATGAA 2 cut(s) 326, 373
TspGWI ACGGA 1 cut(s) 100
TspMI CCCGGG 1 cut(s) 513
TspRI CASTG 2 cut(s) 580, 757
VpaK11BI GGWCC 5 cut(s) 477, 564, 580, 655, 729
XagI CCTNNNNNAGG 1 cut(s) 140
XhoI CTCGAG 1 cut(s) 389
XmaI CCCGGG 1 cut(s) 513
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.