Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Reverse (-)

18052466 .. 18054832

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGTCTCTTCAACACTGAAAACACATGGGCCTTTGTCTTTGGCTTGCTCGGCAACCTTATCTCCTTTGCCGTGTTCCTATCTCCTGTGCCAACGTTCTATAGGATTTGGAAGAAGAAGACAACAGAAGGGTTTCAGTCTATTCCTTATGTTGTGGCGCTCTTCAGTGCGACGCTTTGGCTTTACTATGCGACACAGAAGAAAGATGTCTTCCTCCTCGTAACCATTAACGCCTTTGGTTGCTTCATCGAAACCATCTACATCTCTATGTTCCTTGCCTACGCTCCCAAGCCAGCTCGGATGTTGACAGTGAAGATGCTACTTCTTATGAACTTTGGAGGATTCTGTGCGATTCTCCTTCTTTGCCAATTCTTGGTAAAAGGAGCCACACGTGCTAAGATTATCGGAGGAATCTGTGTCGGATTCTCTGTTTGTGTTTTCGCTGCTCCTCTAAGCATAATCAGGACGGTAATAAAGACAAGAAGTGTGGAGTACATGCCCTTTAGCTTATCCTTAACCCTTACCATCAGTGCTGTCATATGGCTCCTTTATGGTCTTGCTCTCAAGGACATCTATGTTGCTTTCCCGAATGTGCTTGGTTTTGCTCTCGGTGCACTCCAAATGATACTCTACGTTGTCTACAAATACTGTAAAACGTCGCCGCATCTAGGAGAGAAAGAAGTCGAAGCTGCTAAGTTACCGGAGGTGAGCCTCGATATGTTGAAGCTAGGCACAGTTTCATCCCCTGAGCCAATCTCAGTGGTTCGTCAAGCGAACAAGTGTACCTGCGGAAATGATCGAAGGGCTGAGATTGAAGATGGACAAACCCCTAAACATGGCAAGCAGTCCTCTTCCGCAGCAGCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

289

Amino Acids

31.92

Weight (kDa)

9.26

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	4.6e-28	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	1.5e-29	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	794
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	639
AciI	CCGC	3 cut(s)	662, 789, 855
AclI	AACGTT	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	494, 784
AfiI	CCNNNNNNNGG	3 cut(s)	373, 668, 836
AflIII	ACRYGT	1 cut(s)	389
AgsI	TTSAA	3 cut(s)	13, 724, 815
AluBI	AGCT	5 cut(s)	296, 507, 689, 727, 863
AluI	AGCT	5 cut(s)	296, 507, 689, 727, 863
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	612
AoxI	GGCC	1 cut(s)	30
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	4 cut(s)	443, 689, 857, 860
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	718
BaeGI	GKGCMC	1 cut(s)	616
BaeI	ACNNNNGTAYC	2 cut(s)	766, 799
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	125, 202
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	2 cut(s)	430, 676
BccI	CCATC	3 cut(s)	263, 533, 812
BceAI	ACGGC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	2 cut(s)	668, 728
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	794
BisI	GCNGC	5 cut(s)	444, 662, 690, 858, 861
BlsI	GCNGC	5 cut(s)	445, 663, 691, 859, 862
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	385, 545
BmsI	GCATC	2 cut(s)	306, 673
BpiI	GAAGAC	2 cut(s)	125, 202
BplI	GAGNNNNNCTC	2 cut(s)	740, 772
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	548
BsaAI	YACGTR	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	700
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	3 cut(s)	373, 668, 836
BseGI	GGATG	2 cut(s)	306, 740
BseLI	CCNNNNNNNGG	3 cut(s)	373, 668, 836
BseMII	CTCAG	3 cut(s)	738, 771, 798
BseRI	GAGGAG	2 cut(s)	206, 438
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	430, 676
BshFI	GGCC	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	701
BslI	CCNNNNNNNGG	3 cut(s)	373, 668, 836
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	1 cut(s)	796
BspACI	CCGC	3 cut(s)	662, 789, 855
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	3 cut(s)	739, 770, 799
BspLI	GGNNCC	2 cut(s)	385, 545
BspMI	ACCTGC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	167
BssMI	GATC	1 cut(s)	796
Bst4CI	ACNGT	4 cut(s)	310, 469, 650, 736
Bst6I	CTCTTC	3 cut(s)	14, 167, 856
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	47, 294, 842
BstDEI	CTNAG	6 cut(s)	396, 452, 693, 747, 757, 807
BstF5I	GGATG	2 cut(s)	306, 740
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	799
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	796
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 392, 611
BstNSI	RCATGY	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	430, 676
BstV2I	GAAGAC	2 cut(s)	125, 202
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	306, 740
BtsIMutI	CAGTG	5 cut(s)	15, 172, 315, 535, 765
BveI	ACCTGC	1 cut(s)	794
Cac8I	GCNNGC	3 cut(s)	47, 294, 842
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	493, 783
CspCI	CAANNNNNGTGG	4 cut(s)	468, 503, 741, 776
CviAII	CATG	4 cut(s)	27, 496, 836, 867
CviQI	GTAC	2 cut(s)	493, 783
DdeI	CTNAG	6 cut(s)	396, 452, 693, 747, 757, 807
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
Eam1104I	CTCTTC	3 cut(s)	14, 167, 856
EarI	CTCTTC	3 cut(s)	14, 167, 856
Eco57I	CTGAAG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	392
FaeI	CATG	4 cut(s)	30, 499, 839, 870
FatI	CATG	4 cut(s)	26, 495, 835, 866
FauNDI	CATATG	1 cut(s)	539
FblI	GTMKAC	1 cut(s)	639
Fnu4HI	GCNGC	5 cut(s)	444, 662, 690, 858, 861
FokI	GGATG	2 cut(s)	313, 727
Fsp4HI	GCNGC	5 cut(s)	444, 662, 690, 858, 861
FspBI	CTAG	2 cut(s)	668, 728
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	5 cut(s)	444, 662, 690, 858, 861
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	30, 499, 839, 870
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	5 cut(s)	4, 342, 352, 411, 423
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	4 cut(s)	306, 614, 640, 783
Hpy188I	TCNGA	3 cut(s)	300, 407, 422
Hpy188III	TCNNGA	2 cut(s)	463, 586
Hpy8I	GTNNAC	4 cut(s)	306, 614, 640, 783
Hpy99I	CGWCG	2 cut(s)	175, 661
HpyAV	CCTTC	3 cut(s)	122, 368, 795
HpyCH4III	ACNGT	4 cut(s)	310, 469, 650, 736
HpyCH4IV	ACGT	4 cut(s)	95, 391, 633, 656
HpyCH4V	TGCA	1 cut(s)	614
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 392, 611
HpyF3I	CTNAG	6 cut(s)	396, 452, 693, 747, 757, 807
HpySE526I	ACGT	4 cut(s)	95, 391, 633, 656
Hsp92II	CATG	4 cut(s)	30, 499, 839, 870
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	796
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	4 cut(s)	289, 383, 451, 549
LpnPI	CCDG	6 cut(s)	99, 306, 448, 714, 759, 799
Lsp1109I	GCAGC	2 cut(s)	430, 676
LweI	GCATC	2 cut(s)	306, 673
MaeI	CTAG	2 cut(s)	668, 728
MaeII	ACGT	4 cut(s)	95, 391, 633, 656
MaeIII	GTNAC	2 cut(s)	220, 696
MalI	GATC	1 cut(s)	798
MboI	GATC	1 cut(s)	796
MboII	GAAGA	9 cut(s)	124, 127, 130, 154, 202, 211, 325, 827, 843
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	224, 227, 332, 401, 459, 697, 722, 859
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	2 cut(s)	228, 515
MslI	CAYNNNNRTG	1 cut(s)	266
MspI	CCGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	51, 392, 611
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	4 cut(s)	30, 499, 839, 870
NlaIV	GGNNCC	2 cut(s)	385, 545
NmeAIII	GCCGAG	1 cut(s)	30
NspI	RCATGY	1 cut(s)	499
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	4 cut(s)	342, 352, 411, 423
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	5 cut(s)	445, 663, 691, 859, 862
PleI	GAGTC	1 cut(s)	12
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	12
Ppu21I	YACGTR	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	385, 545
PspPI	GGNCC	1 cut(s)	30
RsaI	GTAC	2 cut(s)	494, 784
RsaNI	GTAC	2 cut(s)	493, 783
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	228, 515
SatI	GCNGC	5 cut(s)	444, 662, 690, 858, 861
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	306, 673
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	3 cut(s)	662, 789, 855
SspMI	CTAG	2 cut(s)	668, 728
TaaI	ACNGT	4 cut(s)	310, 469, 650, 736
TaiI	ACGT	4 cut(s)	98, 394, 636, 659
TaqI	TCGA	4 cut(s)	249, 684, 714, 799
TasI	AATT	1 cut(s)	368
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	4 cut(s)	342, 352, 411, 423
Tru1I	TTAA	2 cut(s)	228, 515
Tru9I	TTAA	2 cut(s)	228, 515
TscAI	CASTG	5 cut(s)	22, 172, 315, 535, 765
TseI	GCWGC	4 cut(s)	443, 689, 857, 860
TspDTI	ATGAA	3 cut(s)	235, 344, 729
TspRI	CASTG	5 cut(s)	22, 172, 315, 535, 765
Van91I	CCANNNNNTGG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	612
XceI	RCATGY	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	668, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.