Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Reverse (-)

58921319 .. 58923165

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGACGTCCAGTACTGCTCACTCCCCTCTGGTTTTTGCCTTTGGCATCCTAGGTAACATTGTCTCCTTCATCGTGTTTCTAGCTCCAGTGCCAACATTTTTCAGGGTGTACAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGCGAACACCTTGAGGCTGCTTCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTCTTTTGTCTCACTTCCTAGCACAAGGGCCAACTCGGGTTAAAGTTCTTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCAGCACCTTTAAGCATCATGAGATTGGTTATTCGCACCAAGAGTGTAGAATTCATGCCGTTTTCTCTGTCCTTCTTCCTCACCCTCAGTGCTATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATATTCGGTTTCAGCTTTGGTGTGGCTCAGATGATACTGTATGCAATTTACCGAAACAACAAAACGGTTATTGTGGACAAGGAGAAGCTACCAGAGCACAAAACAGCTGATGACATTGTGAAGCAGATTAACATCACGGTTTTGCCTACTTCTGAGGTACAAGTACAAGTAAAAGAAGAGGCCGTAAGCCGCGCCCGTGCCAATAATTCCGACGAAAGCTATGATGATCATGGGCAAAACGAACACGATCAACGTGAGCATGTTCCACAGCCATGTCACGTTGATGCTCAAGGCATCGACTTGGTCTCTAAGCAAGTCCCGGTTCTTGTTCAATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

261

Amino Acids

29.16

Weight (kDa)

7.71

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 51	2.5e-08	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	84 - 168	1.2e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccII	CGCG	1 cut(s)	633
AciI	CCGC	2 cut(s)	431, 631
AcsI	RAATTY	2 cut(s)	181, 341
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	13, 110, 600, 606
AgsI	TTSAA	2 cut(s)	137, 773
AluBI	AGCT	6 cut(s)	83, 272, 456, 529, 548, 660
AluI	AGCT	6 cut(s)	83, 272, 456, 529, 548, 660
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	3 cut(s)	67, 219, 751
Ama87I	CYCGRG	1 cut(s)	240
AoxI	GGCC	3 cut(s)	233, 432, 621
ApeKI	GCWGC	2 cut(s)	166, 293
ApoI	RAATTY	2 cut(s)	181, 341
Asp700I	GAANNNNTTC	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	233, 433
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	1 cut(s)	364
AvaI	CYCGRG	1 cut(s)	240
AvrII	CCTAGG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	153, 305
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	2 cut(s)	334, 608
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	67, 219, 751
BfaI	CTAG	3 cut(s)	50, 80, 224
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	4 cut(s)	167, 294, 432, 631
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	4 cut(s)	168, 295, 433, 632
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	761
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	233, 433
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	761
BmsI	GCATC	4 cut(s)	54, 315, 715, 744
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	181, 714
BpuMI	CCSGG	1 cut(s)	761
BsaBI	GATNNNNATC	2 cut(s)	136, 572
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	751
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	2 cut(s)	9, 86
Bse8I	GATNNNNATC	2 cut(s)	136, 572
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	45, 263
BseJI	GATNNNNATC	2 cut(s)	136, 572
BseMII	CTCAG	3 cut(s)	391, 482, 585
BseNI	ACTGG	2 cut(s)	9, 86
BseXI	GCAGC	2 cut(s)	153, 305
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	235, 434, 623
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	761
BslFI	GGGAC	1 cut(s)	743
BsmAI	GTCTC	3 cut(s)	67, 219, 751
BsmFI	GGGAC	1 cut(s)	743
BsnI	GGCC	3 cut(s)	235, 434, 623
Bso31I	GGTCTC	1 cut(s)	751
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	3 cut(s)	418, 667, 688
BspACI	CCGC	2 cut(s)	431, 631
BspANI	GGCC	3 cut(s)	235, 434, 623
BspCNI	CTCAG	3 cut(s)	390, 481, 586
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	435
BspQI	GCTCTTC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	751
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	9, 86
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	3 cut(s)	418, 667, 688
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	480, 508, 580
Bst6I	CTCTTC	2 cut(s)	401, 612
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	108
BstDEI	CTNAG	4 cut(s)	377, 468, 594, 750
BstF5I	GGATG	2 cut(s)	45, 263
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	3 cut(s)	421, 670, 691
BstMAI	GTCTC	3 cut(s)	67, 219, 751
BstMBI	GATC	3 cut(s)	418, 667, 688
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	759
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	2 cut(s)	153, 305
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	235, 434, 623
BtsCI	GGATG	2 cut(s)	45, 263
BtsIMutI	CAGTG	3 cut(s)	93, 289, 385
CciI	TCATGA	1 cut(s)	309
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	233, 433
Csp6I	GTAC	4 cut(s)	12, 109, 599, 605
CviAII	CATG	6 cut(s)	310, 346, 388, 671, 701, 714
CviQI	GTAC	4 cut(s)	12, 109, 599, 605
DdeI	CTNAG	4 cut(s)	377, 468, 594, 750
DpnI	GATC	3 cut(s)	420, 669, 690
DpnII	GATC	3 cut(s)	418, 667, 688
Eam1104I	CTCTTC	2 cut(s)	401, 612
EarI	CTCTTC	2 cut(s)	401, 612
Eco130I	CCWWGG	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	751
Eco88I	CYCGRG	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	6 cut(s)	313, 349, 391, 674, 704, 717
FaqI	GGGAC	1 cut(s)	743
FatI	CATG	6 cut(s)	309, 345, 387, 670, 700, 713
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	4 cut(s)	167, 294, 432, 631
FokI	GGATG	2 cut(s)	32, 270
Fsp4HI	GCNGC	4 cut(s)	167, 294, 432, 631
FspBI	CTAG	3 cut(s)	50, 80, 224
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	4 cut(s)	167, 294, 432, 631
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	235, 434, 623
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	635
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	313, 349, 391, 674, 704, 717
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	3 cut(s)	109, 407, 517
Hpy188I	TCNGA	3 cut(s)	471, 595, 652
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	3 cut(s)	109, 407, 517
Hpy99I	CGWCG	1 cut(s)	656
HpyAV	CCTTC	3 cut(s)	76, 122, 373
HpyCH4III	ACNGT	3 cut(s)	480, 508, 580
HpyCH4IV	ACGT	3 cut(s)	5, 694, 720
HpyCH4V	TGCA	2 cut(s)	293, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	4 cut(s)	377, 468, 594, 750
HpySE526I	ACGT	3 cut(s)	5, 694, 720
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	313, 349, 391, 674, 704, 717
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	3 cut(s)	418, 667, 688
LguI	GCTCTTC	1 cut(s)	401
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	6 cut(s)	14, 22, 88, 99, 546, 774
Lsp1109I	GCAGC	2 cut(s)	153, 305
LweI	GCATC	4 cut(s)	54, 315, 715, 744
MaeI	CTAG	3 cut(s)	50, 80, 224
MaeII	ACGT	3 cut(s)	5, 694, 720
MaeIII	GTNAC	2 cut(s)	53, 716
MalI	GATC	3 cut(s)	420, 669, 690
MboI	GATC	3 cut(s)	418, 667, 688
MboII	GAAGA	6 cut(s)	127, 164, 197, 358, 388, 629
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	4 cut(s)	181, 341, 486, 646
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	6 cut(s)	36, 156, 380, 386, 589, 613
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	4 cut(s)	246, 302, 414, 570
MslI	CAYNNNNRTG	2 cut(s)	712, 723
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	761
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	1 cut(s)	535
NciI	CCSGG	1 cut(s)	761
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	3 cut(s)	418, 667, 688
NlaIII	CATG	6 cut(s)	313, 349, 391, 674, 704, 717
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	716
NspI	RCATGY	1 cut(s)	704
PagI	TCATGA	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	202
PflFI	GACNNNGTC	1 cut(s)	743
PkrI	GCNGC	4 cut(s)	168, 295, 433, 632
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	233, 433
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	4 cut(s)	13, 110, 600, 606
RsaNI	GTAC	4 cut(s)	12, 109, 599, 605
RseI	CAYNNNNRTG	2 cut(s)	712, 723
SapI	GCTCTTC	1 cut(s)	401
SaqAI	TTAA	4 cut(s)	246, 302, 414, 570
SatI	GCNGC	4 cut(s)	167, 294, 432, 631
Sau3AI	GATC	3 cut(s)	418, 667, 688
Sau96I	GGNCC	2 cut(s)	233, 433
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	761
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	4 cut(s)	54, 315, 715, 744
SmiMI	CAYNNNNRTG	2 cut(s)	712, 723
SmlI	CTYRAG	2 cut(s)	160, 729
SmoI	CTYRAG	2 cut(s)	160, 729
Sse9I	AATT	4 cut(s)	181, 341, 486, 646
SsiI	CCGC	2 cut(s)	431, 631
SspMI	CTAG	3 cut(s)	50, 80, 224
StyD4I	CCNGG	1 cut(s)	759
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	480, 508, 580
TaiI	ACGT	3 cut(s)	8, 697, 723
TaqI	TCGA	1 cut(s)	738
TasI	AATT	4 cut(s)	181, 341, 486, 646
TatI	WGTACW	3 cut(s)	11, 108, 604
TauI	GCSGC	2 cut(s)	434, 633
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	4 cut(s)	246, 302, 414, 570
Tru9I	TTAA	4 cut(s)	246, 302, 414, 570
TscAI	CASTG	3 cut(s)	93, 289, 385
TseFI	GTSAC	1 cut(s)	716
TseI	GCWGC	2 cut(s)	166, 293
Tsp45I	GTSAC	1 cut(s)	716
TspDTI	ATGAA	2 cut(s)	58, 334
TspRI	CASTG	3 cut(s)	93, 289, 385
Tth111I	GACNNNGTC	1 cut(s)	743
XapI	RAATTY	2 cut(s)	181, 341
XceI	RCATGY	1 cut(s)	704
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	3 cut(s)	50, 80, 224
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.