Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Reverse (-)

5188507 .. 5190910

Gene Structure 2404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACGTCTTCCCACTCCCCTCTGGCTTTTGCCTTTGGCATTCTAGGTAACATTGTCTCGTTCATCGTGTTTCTAGCTCCAGTGCCAACATTTTACAGGGTGTACAAAAAGAAATCAACGGAAGGATTTCAATCAATTCCTTATATATTTGCGCTCTTCAGTGCAACAATCTGGATTTACTATGCGTCCCTTAAATCCGATGAGATGCTTCTTATCACCATCAATGGCTTCGGTTGTGTAATCGAGACGATTTATATTGCAATGTACATTACATATGCACCAAAGAAAGCTAGGGTGAACACCTTGAGGCTATTGCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTTTTTTGTCTCACTTCCTAACACAAGGGCCAACTCGGGTTAAGGTTCTTGGATGGGTTTGTGTAGCCTTCTCTGTCAGTGTCTTTGCAGCACCTTTAAGCATCATGCGATTGGTAATTCGAACCAAGAGCGTAGAATTCATGCCGTTCTCTCTGTCCTTCTTCCTCACCCTCAGTGCGATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATACTTGGTTTCAGCTTCGGTGTGGTTCAGATGATACTGTATGCAGCCTACAGAAACAAGAAGACGGTTCTTGTGGACGAGGAGAAGGTACCAGAGCACAAAACAGCTGATGATTTTGTGAAGCAAATCAACATCACGGTTTTGCCTTCTCCTAAGGCACAAGTACAAGTAAAAGAAGAGGCCGTAAGCCCCGCCCGTGCCGACAGTTCCGACGAAAGCAGCGACGATCATGAGCAAAACGTACACGATCAACAACGTGAGCATGTTCCACAGCCATGTCATGTTGATGCTCAAGGAGCCGACTTGATCTCGAAGCAAGTCCCGGCACTTGTTCAATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

311

Amino Acids

34.7

Weight (kDa)

7.65

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 96	4.2e-28	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	132 - 216	1.2e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
Acc65I	GGTACC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	673
AciI	CCGC	2 cut(s)	575, 777
AcsI	RAATTY	2 cut(s)	325, 485
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	104, 266, 675, 750, 828
AgsI	TTSAA	2 cut(s)	131, 920
AluBI	AGCT	4 cut(s)	77, 290, 600, 692
AluI	AGCT	4 cut(s)	77, 290, 600, 692
Alw21I	GWGCWC	1 cut(s)	684
Alw26I	GTCTC	3 cut(s)	61, 239, 363
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	3 cut(s)	377, 576, 765
ApeKI	GCWGC	3 cut(s)	437, 629, 804
ApoI	RAATTY	2 cut(s)	325, 485
Asp700I	GAANNNNTTC	1 cut(s)	126
Asp718I	GGTACC	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	154
AspS9I	GGNCC	2 cut(s)	377, 577
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	3 cut(s)	208, 307, 508
AsuII	TTCGAA	1 cut(s)	469
AvaI	CYCGRG	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	684
BbvI	GCAGC	3 cut(s)	449, 641, 816
BccI	CCATC	2 cut(s)	227, 396
BceAI	ACGGC	2 cut(s)	478, 752
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	3 cut(s)	61, 239, 363
BfaI	CTAG	3 cut(s)	44, 74, 291
BfmI	CTRYAG	1 cut(s)	634
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	4 cut(s)	438, 576, 630, 805
BlsI	GCNGC	4 cut(s)	439, 577, 631, 806
Bme1390I	CCNGG	1 cut(s)	908
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	2 cut(s)	377, 577
BmiI	GGNNCC	3 cut(s)	579, 675, 883
BmrFI	CCNGG	1 cut(s)	908
BmsI	GCATC	3 cut(s)	195, 459, 862
BpiI	GAAGAC	1 cut(s)	653
BpmI	CTGGAG	1 cut(s)	63
Bpu14I	TTCGAA	1 cut(s)	469
BpuEI	CTTGAG	2 cut(s)	325, 861
BpuMI	CCSGG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	738
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	130
BseGI	GGATG	1 cut(s)	407
BseJI	GATNNNNATC	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	535
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	3 cut(s)	449, 641, 816
BshFI	GGCC	3 cut(s)	379, 578, 767
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	684
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	908
BslFI	GGGAC	2 cut(s)	172, 890
BsmAI	GTCTC	3 cut(s)	61, 239, 363
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	2 cut(s)	172, 890
BsmI	GAATGC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	379, 578, 767
BsoBI	CYCGRG	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	469
Bsp1286I	GDGCHC	1 cut(s)	684
Bsp1407I	TGTACA	2 cut(s)	102, 264
Bsp143I	GATC	5 cut(s)	528, 562, 811, 832, 891
BspACI	CCGC	2 cut(s)	575, 777
BspANI	GGCC	3 cut(s)	379, 578, 767
BspCNI	CTCAG	1 cut(s)	534
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	3 cut(s)	579, 675, 883
BspQI	GCTCTTC	2 cut(s)	161, 545
BspT104I	TTCGAA	1 cut(s)	469
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	2 cut(s)	102, 264
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	5 cut(s)	528, 562, 811, 832, 891
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	624, 652, 724, 791
Bst6I	CTCTTC	3 cut(s)	161, 545, 756
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	2 cut(s)	102, 264
BstBI	TTCGAA	1 cut(s)	469
BstDEI	CTNAG	2 cut(s)	521, 738
BstF5I	GGATG	1 cut(s)	407
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	5 cut(s)	531, 565, 814, 835, 894
BstMAI	GTCTC	3 cut(s)	61, 239, 363
BstMBI	GATC	5 cut(s)	528, 562, 811, 832, 891
BstMWI	GCNNNNNNNGC	1 cut(s)	881
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	634
BstV1I	GCAGC	3 cut(s)	449, 641, 816
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	738
BsuRI	GGCC	3 cut(s)	379, 578, 767
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	4 cut(s)	87, 166, 433, 529
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	154
Cfr13I	GGNCC	2 cut(s)	377, 577
CseI	GACGC	1 cut(s)	174
Csp6I	GTAC	5 cut(s)	103, 265, 674, 749, 827
CviAII	CATG	7 cut(s)	454, 490, 532, 815, 848, 861, 866
CviQI	GTAC	5 cut(s)	103, 265, 674, 749, 827
DdeI	CTNAG	2 cut(s)	521, 738
DpnI	GATC	5 cut(s)	530, 564, 813, 834, 893
DpnII	GATC	5 cut(s)	528, 562, 811, 832, 891
Eam1104I	CTCTTC	3 cut(s)	161, 545, 756
EarI	CTCTTC	3 cut(s)	161, 545, 756
Eco57I	CTGAAG	1 cut(s)	142
Eco81I	CCTNAGG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	485
Esp3I	CGTCTC	1 cut(s)	239
FaeI	CATG	7 cut(s)	457, 493, 535, 818, 851, 864, 869
FaqI	GGGAC	2 cut(s)	172, 890
FatI	CATG	7 cut(s)	453, 489, 531, 814, 847, 860, 865
FauI	CCCGC	1 cut(s)	784
FauNDI	CATATG	1 cut(s)	274
Fnu4HI	GCNGC	4 cut(s)	438, 576, 630, 805
FokI	GGATG	1 cut(s)	414
Fsp4HI	GCNGC	4 cut(s)	438, 576, 630, 805
FspBI	CTAG	3 cut(s)	44, 74, 291
GlaI	GCGC	1 cut(s)	153
GluI	GCNGC	4 cut(s)	438, 576, 630, 805
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	379, 578, 767
HapII	CCGG	1 cut(s)	908
HgaI	GACGC	1 cut(s)	174
HhaI	GCGC	1 cut(s)	154
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	457, 493, 535, 818, 851, 864, 869
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	346
HpaII	CCGG	1 cut(s)	908
HphI	GGTGA	3 cut(s)	208, 307, 508
Hpy166II	GTNNAC	5 cut(s)	103, 298, 551, 661, 829
Hpy188I	TCNGA	3 cut(s)	199, 615, 796
Hpy188III	TCNNGA	4 cut(s)	172, 244, 815, 895
Hpy8I	GTNNAC	5 cut(s)	103, 298, 551, 661, 829
Hpy99I	CGWCG	2 cut(s)	800, 812
HpyAV	CCTTC	5 cut(s)	116, 427, 517, 664, 741
HpyCH4III	ACNGT	4 cut(s)	624, 652, 724, 791
HpyCH4IV	ACGT	3 cut(s)	5, 825, 841
HpyCH4V	TGCA	5 cut(s)	164, 260, 278, 437, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	881
HpyF3I	CTNAG	2 cut(s)	521, 738
HpySE526I	ACGT	3 cut(s)	5, 825, 841
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	457, 493, 535, 818, 851, 864, 869
HspAI	GCGC	1 cut(s)	152
KpnI	GGTACC	1 cut(s)	677
Kzo9I	GATC	5 cut(s)	528, 562, 811, 832, 891
LguI	GCTCTTC	2 cut(s)	161, 545
LmnI	GCTCC	2 cut(s)	82, 881
LpnPI	CCDG	6 cut(s)	8, 82, 93, 157, 690, 921
Lsp1109I	GCAGC	3 cut(s)	449, 641, 816
LweI	GCATC	3 cut(s)	195, 459, 862
MaeI	CTAG	3 cut(s)	44, 74, 291
MaeII	ACGT	3 cut(s)	5, 825, 841
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	5 cut(s)	530, 564, 813, 834, 893
MboI	GATC	5 cut(s)	528, 562, 811, 832, 891
MboII	GAAGA	5 cut(s)	148, 502, 532, 658, 773
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	684
MluCI	AATT	4 cut(s)	135, 325, 465, 485
MmeI	TCCRAC	1 cut(s)	819
MnlI	CCTC	6 cut(s)	30, 300, 524, 530, 658, 757
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	4 cut(s)	192, 390, 446, 558
MslI	CAYNNNNRTG	2 cut(s)	859, 870
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	908
MspR9I	CCNGG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	881
NciI	CCSGG	1 cut(s)	908
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	5 cut(s)	528, 562, 811, 832, 891
NlaIII	CATG	7 cut(s)	457, 493, 535, 818, 851, 864, 869
NlaIV	GGNNCC	3 cut(s)	579, 675, 883
NspI	RCATGY	1 cut(s)	851
NspV	TTCGAA	1 cut(s)	469
PagI	TCATGA	1 cut(s)	814
PciSI	GCTCTTC	2 cut(s)	161, 545
PcsI	WCGNNNNNNNCGW	1 cut(s)	804
PctI	GAATGC	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	439, 577, 631, 806
PspN4I	GGNNCC	3 cut(s)	579, 675, 883
PspPI	GGNCC	2 cut(s)	377, 577
PsuI	RGATCY	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	5 cut(s)	104, 266, 675, 750, 828
RsaNI	GTAC	5 cut(s)	103, 265, 674, 749, 827
RseI	CAYNNNNRTG	2 cut(s)	859, 870
SapI	GCTCTTC	2 cut(s)	161, 545
SaqAI	TTAA	4 cut(s)	192, 390, 446, 558
SatI	GCNGC	4 cut(s)	438, 576, 630, 805
Sau3AI	GATC	5 cut(s)	528, 562, 811, 832, 891
Sau96I	GGNCC	2 cut(s)	377, 577
ScrFI	CCNGG	1 cut(s)	908
SduI	GDGCHC	1 cut(s)	684
SfaNI	GCATC	3 cut(s)	195, 459, 862
SfcI	CTRYAG	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	859, 870
SmlI	CTYRAG	2 cut(s)	304, 876
SmoI	CTYRAG	2 cut(s)	304, 876
Sse9I	AATT	4 cut(s)	135, 325, 465, 485
SsiI	CCGC	2 cut(s)	575, 777
SspMI	CTAG	3 cut(s)	44, 74, 291
StyD4I	CCNGG	1 cut(s)	906
TaaI	ACNGT	4 cut(s)	624, 652, 724, 791
TaiI	ACGT	3 cut(s)	8, 828, 844
TaqI	TCGA	3 cut(s)	243, 469, 896
TasI	AATT	4 cut(s)	135, 325, 465, 485
TatI	WGTACW	3 cut(s)	102, 264, 748
TauI	GCSGC	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	4 cut(s)	192, 390, 446, 558
Tru9I	TTAA	4 cut(s)	192, 390, 446, 558
TscAI	CASTG	4 cut(s)	87, 166, 433, 529
TseI	GCWGC	3 cut(s)	437, 629, 804
TspDTI	ATGAA	2 cut(s)	52, 478
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	4 cut(s)	87, 166, 433, 529
XapI	RAATTY	2 cut(s)	325, 485
XceI	RCATGY	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	44, 74, 291
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.