Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

8832457 .. 8860614

Gene Structure 28158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG103800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACGTCAAGTACTGCTCACTCCCCTCTGGTTTTTGCCTTTGGCATCCTAGGTAACATTGTCTCCTTCATCGTGTTTCTAGCTCCAGTGCCAACATTTTTCAGGGTGTACAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGTATTTGCACTCTTCAGTGCAACGATCTGGATTTACTATGCATCCCTTAAATCTGATGAGATGCTTCTTATCACCATCAATGGCTTCGGTTGTGTCATCGAGACCATTTATATTGCAATGTACATTACATTTGCACCAAAGCAAGCTAGGGTGAACACCTTGAGGCTGCTTCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTCTTTTGTCTCACTTCCTAGCACAAGGGCCAACTCGGGTTAAAGTTCTTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCGGCACCTTTAAGCATCATGAGATTGGTTATTCGCACCAAGAGCGTAGAATTCATGCCGTTTTCCCTGTCCTTCTTCCTCACCCTCAGTGCTATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATACTCGGTTTCAGCTTTGGTGTGGCTCAGATGATACTGTATGCAATTTACCGAAACAGCAAAACGGTTATTGTGGACAAGGAGAAGCTACCAGAGCACAAAACAGCTGATGACATTGTGAAGCAGATCAACATCACGGTTTTGCCTACTTCTGAGGTGCAAGTACAAGTAAAAGAAGAGGCCGTAAGCCCCGCCTGTGCCAATAATTCCGATGAAAGCTATGACGATCATGGGCAAAACGAACGCGATCAACGTGAGCATGTTCCACAGCCATGCCACGTTGATGCTCAAGGCATCGACTTGGTCTCTAAGCAAGTCCCGGTTCTTGTTCAATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

311

Amino Acids

34.71

Weight (kDa)

6.99

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	1.2e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	3.3e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	445
AccII	CGCG	1 cut(s)	837
AciI	CCGC	3 cut(s)	443, 581, 783
AcsI	RAATTY	2 cut(s)	331, 491
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	13, 110, 272, 756
AgsI	TTSAA	2 cut(s)	137, 923
AluBI	AGCT	7 cut(s)	83, 296, 422, 606, 679, 698, 810
AluI	AGCT	7 cut(s)	83, 296, 422, 606, 679, 698, 810
Alw21I	GWGCWC	1 cut(s)	690
Alw26I	GTCTC	4 cut(s)	67, 245, 369, 901
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	383, 582, 771
ApeKI	GCWGC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	331, 491
Asp700I	GAANNNNTTC	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	383, 583
AsuC2I	CCSGG	1 cut(s)	911
AsuHPI	GGTGA	3 cut(s)	214, 313, 514
AvaI	CYCGRG	1 cut(s)	390
AvrII	CCTAGG	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	303
BccI	CCATC	2 cut(s)	233, 402
BceAI	ACGGC	2 cut(s)	484, 758
BcnI	CCSGG	1 cut(s)	911
BcoDI	GTCTC	4 cut(s)	67, 245, 369, 901
BfaI	CTAG	4 cut(s)	50, 80, 297, 374
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	3 cut(s)	317, 444, 582
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	3 cut(s)	318, 445, 583
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	911
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	383, 583
BmiI	GGNNCC	2 cut(s)	447, 585
BmrFI	CCNGG	1 cut(s)	911
BmsI	GCATC	6 cut(s)	54, 200, 201, 465, 865, 894
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	331, 864
BpuMI	CCSGG	1 cut(s)	911
BsaBI	GATNNNNATC	2 cut(s)	136, 722
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	245, 901
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	2 cut(s)	136, 722
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	45, 191, 413
BseJI	GATNNNNATC	2 cut(s)	136, 722
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	541, 632, 735
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	303
Bsh1236I	CGCG	1 cut(s)	837
BshFI	GGCC	3 cut(s)	385, 584, 773
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	690
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	911
BslFI	GGGAC	1 cut(s)	893
BsmAI	GTCTC	4 cut(s)	67, 245, 369, 901
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	3 cut(s)	385, 584, 773
Bso31I	GGTCTC	2 cut(s)	245, 901
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	1 cut(s)	690
Bsp1407I	TGTACA	2 cut(s)	108, 270
Bsp143I	GATC	5 cut(s)	174, 568, 717, 817, 838
BspACI	CCGC	3 cut(s)	443, 581, 783
BspANI	GGCC	3 cut(s)	385, 584, 773
BspCNI	CTCAG	3 cut(s)	540, 631, 736
BspFNI	CGCG	1 cut(s)	837
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	447, 585
BspQI	GCTCTTC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	245, 901
BsrDI	GCAATG	1 cut(s)	273
BsrGI	TGTACA	2 cut(s)	108, 270
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	5 cut(s)	174, 568, 717, 817, 838
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	630, 658, 730
Bst6I	CTCTTC	3 cut(s)	167, 551, 762
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	2 cut(s)	108, 270
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	527, 618, 744, 900
BstF5I	GGATG	3 cut(s)	45, 191, 413
BstFNI	CGCG	1 cut(s)	837
BstKTI	GATC	5 cut(s)	177, 571, 720, 820, 841
BstMAI	GTCTC	4 cut(s)	67, 245, 369, 901
BstMBI	GATC	5 cut(s)	174, 568, 717, 817, 838
BstMWI	GCNNNNNNNGC	2 cut(s)	483, 685
BstNSI	RCATGY	1 cut(s)	854
BstSCI	CCNGG	1 cut(s)	909
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	1 cut(s)	303
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	385, 584, 773
BtsCI	GGATG	3 cut(s)	45, 191, 413
BtsIMutI	CAGTG	4 cut(s)	93, 172, 439, 535
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	459
Cfr13I	GGNCC	2 cut(s)	383, 583
Csp6I	GTAC	4 cut(s)	12, 109, 271, 755
CviAII	CATG	6 cut(s)	460, 496, 538, 821, 851, 864
CviQI	GTAC	4 cut(s)	12, 109, 271, 755
DdeI	CTNAG	4 cut(s)	527, 618, 744, 900
DpnI	GATC	5 cut(s)	176, 570, 719, 819, 840
DpnII	GATC	5 cut(s)	174, 568, 717, 817, 838
Eam1104I	CTCTTC	3 cut(s)	167, 551, 762
EarI	CTCTTC	3 cut(s)	167, 551, 762
Eco130I	CCWWGG	1 cut(s)	49
Eco31I	GGTCTC	2 cut(s)	245, 901
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	6 cut(s)	463, 499, 541, 824, 854, 867
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	6 cut(s)	459, 495, 537, 820, 850, 863
FauI	CCCGC	1 cut(s)	790
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	317, 444, 582
FokI	GGATG	3 cut(s)	32, 178, 420
Fsp4HI	GCNGC	3 cut(s)	317, 444, 582
FspBI	CTAG	4 cut(s)	50, 80, 297, 374
GluI	GCNGC	3 cut(s)	317, 444, 582
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	385, 584, 773
HapII	CCGG	1 cut(s)	911
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	463, 499, 541, 824, 854, 867
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	911
HphI	GGTGA	3 cut(s)	214, 313, 514
Hpy166II	GTNNAC	4 cut(s)	109, 304, 557, 667
Hpy188I	TCNGA	4 cut(s)	205, 621, 745, 802
Hpy188III	TCNNGA	3 cut(s)	178, 250, 460
Hpy8I	GTNNAC	4 cut(s)	109, 304, 557, 667
HpyAV	CCTTC	3 cut(s)	76, 122, 523
HpyCH4III	ACNGT	3 cut(s)	630, 658, 730
HpyCH4IV	ACGT	3 cut(s)	5, 844, 870
HpyCH4V	TGCA	7 cut(s)	158, 170, 191, 266, 284, 635, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	483, 685
HpyF3I	CTNAG	4 cut(s)	527, 618, 744, 900
HpySE526I	ACGT	3 cut(s)	5, 844, 870
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	463, 499, 541, 824, 854, 867
Kzo9I	GATC	5 cut(s)	174, 568, 717, 817, 838
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	14, 88, 99, 163, 521, 696, 799, 924
Lsp1109I	GCAGC	1 cut(s)	303
LweI	GCATC	6 cut(s)	54, 200, 201, 465, 865, 894
MaeI	CTAG	4 cut(s)	50, 80, 297, 374
MaeII	ACGT	3 cut(s)	5, 844, 870
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	176, 570, 719, 819, 840
MboI	GATC	5 cut(s)	174, 568, 717, 817, 838
MboII	GAAGA	7 cut(s)	127, 154, 314, 347, 508, 538, 779
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	690
MluCI	AATT	4 cut(s)	331, 491, 636, 796
MnlI	CCTC	6 cut(s)	36, 306, 530, 536, 739, 763
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	4 cut(s)	198, 396, 452, 564
MslI	CAYNNNNRTG	2 cut(s)	862, 873
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	911
MspR9I	CCNGG	1 cut(s)	911
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	483, 685
NciI	CCSGG	1 cut(s)	911
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	5 cut(s)	174, 568, 717, 817, 838
NlaIII	CATG	6 cut(s)	463, 499, 541, 824, 854, 867
NlaIV	GGNNCC	2 cut(s)	447, 585
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	854
PagI	TCATGA	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	352
PflFI	GACNNNGTC	1 cut(s)	893
PkrI	GCNGC	3 cut(s)	318, 445, 583
PspN4I	GGNNCC	2 cut(s)	447, 585
PspPI	GGNCC	2 cut(s)	383, 583
PsuI	RGATCY	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	893
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	4 cut(s)	13, 110, 272, 756
RsaNI	GTAC	4 cut(s)	12, 109, 271, 755
RseI	CAYNNNNRTG	2 cut(s)	862, 873
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	198, 396, 452, 564
SatI	GCNGC	3 cut(s)	317, 444, 582
Sau3AI	GATC	5 cut(s)	174, 568, 717, 817, 838
Sau96I	GGNCC	2 cut(s)	383, 583
ScaI	AGTACT	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	911
SduI	GDGCHC	1 cut(s)	690
SfaNI	GCATC	6 cut(s)	54, 200, 201, 465, 865, 894
SmiMI	CAYNNNNRTG	2 cut(s)	862, 873
SmlI	CTYRAG	2 cut(s)	310, 879
SmoI	CTYRAG	2 cut(s)	310, 879
Sse9I	AATT	4 cut(s)	331, 491, 636, 796
SsiI	CCGC	3 cut(s)	443, 581, 783
SspMI	CTAG	4 cut(s)	50, 80, 297, 374
StyD4I	CCNGG	1 cut(s)	909
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	630, 658, 730
TaiI	ACGT	3 cut(s)	8, 847, 873
TaqI	TCGA	2 cut(s)	249, 888
TasI	AATT	4 cut(s)	331, 491, 636, 796
TatI	WGTACW	4 cut(s)	11, 108, 270, 754
TauI	GCSGC	2 cut(s)	446, 584
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	4 cut(s)	198, 396, 452, 564
Tru9I	TTAA	4 cut(s)	198, 396, 452, 564
TscAI	CASTG	4 cut(s)	93, 172, 439, 535
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	58, 484, 819
TspRI	CASTG	4 cut(s)	93, 172, 439, 535
Tth111I	GACNNNGTC	1 cut(s)	893
XapI	RAATTY	2 cut(s)	331, 491
XceI	RCATGY	1 cut(s)	854
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	4 cut(s)	50, 80, 297, 374
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.