Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

8655730 .. 8657568

Gene Structure 1839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGACGTCAAGTACTGCTCACTCCCCTCTGGTTTTTGCCTTTGGCATCCTAGGTAACATTGTCTCCTTCATCGTGTTTCTAGCTCCAGTGCCAACATTTTTCAGGGTGTACAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGTATTTGCACTCTTCAGTGCAACGATCTGGATTTACTATGCATCCCTTAAATCTGATGAGATGCTTCTTATCACCATCAATGGCTTCGGTTGTGTCATCGAGACCATTTATATTGCAATGTACATTACATTTGCACCAAAGCAAGCTAGGGTAAAATACCAGACTCTCTCTCCACCCCCGCGCCCCCCCCCCCCCCCCCCCCCCCCTCCAATCAAGCTGCTACTAATTAATGGAGTAATGGAATTAATATTCGTTGTAATAAAATTGCAGGTGAACACCTTGAGGCTGCTTCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTCTTTTGTCTCACTTCCTAGCACAAGGGCCAACTCGGGTTAAAGTTCTTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCGGCACCTTTAAGCATCATGAGATTGGTTATTCGCACCAAGAGCGTAGAATTCATGCCGTTTTCCCTGTCCTTCTTCCTCACCCTCAGTGCTATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATACTCGGTTTCAGCTTTGGTGTGGCTCAGATGATACTGTATGCAATTTACCGAAACAGCAAAACGGTTATTGTGGACAAGGAGAAGCTACCAGAGCACAAAACAGCTGATGACATTGTGAAGCAGATCAACATCACGGTTTTGCCTACTTCTGAGGTACAAGTACAAGTAAAAGAAGAGGCCGTAAGCCCCGCCCGTGCCAATAATTCCGACGAAAATGATGATCATGAGCAAAACGAACACGATCAACGTGAGCATGTTCCACAGCCATGTCGCGTTGATGCTCAAGGCATCGACTTGGTCTCTAAGCAAGTCCCGGTTCTTGTTCAATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

350

Amino Acids

39.12

Weight (kDa)

8.49

Isoelectric Point (pI)

40.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	1.4e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	174 - 258	4.1e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	409
AatII	GACGTC	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	565
AccII	CGCG	2 cut(s)	331, 987
AciI	CCGC	4 cut(s)	329, 563, 701, 903
AcsI	RAATTY	2 cut(s)	451, 611
AcuI	CTGAAG	1 cut(s)	148
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	13, 110, 272, 870, 876
AgsI	TTSAA	2 cut(s)	137, 1040
AluBI	AGCT	7 cut(s)	83, 296, 367, 542, 726, 799, 818
AluI	AGCT	7 cut(s)	83, 296, 367, 542, 726, 799, 818
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	4 cut(s)	67, 245, 489, 1018
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	3 cut(s)	503, 702, 891
ApeKI	GCWGC	2 cut(s)	367, 436
ApoI	RAATTY	2 cut(s)	451, 611
AseI	ATTAAT	2 cut(s)	378, 395
Asp700I	GAANNNNTTC	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	503, 703
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	3 cut(s)	214, 433, 634
AvaI	CYCGRG	1 cut(s)	510
AvrII	CCTAGG	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	810
BbvI	GCAGC	2 cut(s)	354, 423
BccI	CCATC	2 cut(s)	233, 522
BceAI	ACGGC	2 cut(s)	604, 878
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	4 cut(s)	67, 245, 489, 1018
BfaI	CTAG	4 cut(s)	50, 80, 297, 494
BfuAI	ACCTGC	1 cut(s)	409
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	4 cut(s)	368, 437, 564, 702
BlnI	CCTAGG	1 cut(s)	49
BlsI	GCNGC	4 cut(s)	369, 438, 565, 703
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	1028
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	2 cut(s)	503, 703
BmiI	GGNNCC	2 cut(s)	567, 705
BmrFI	CCNGG	1 cut(s)	1028
BmsI	GCATC	6 cut(s)	54, 200, 201, 585, 982, 1011
BpmI	CTGGAG	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	451, 981
BpuMI	CCSGG	1 cut(s)	1028
BsaBI	GATNNNNATC	2 cut(s)	136, 842
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	245, 1018
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	4 cut(s)	47, 77, 304, 334
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	273
Bse8I	GATNNNNATC	2 cut(s)	136, 842
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	45, 191, 533
BseJI	GATNNNNATC	2 cut(s)	136, 842
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	661, 752, 855
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	354, 423
Bsh1236I	CGCG	2 cut(s)	331, 987
BshFI	GGCC	3 cut(s)	505, 704, 893
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	1 cut(s)	1010
BsmAI	GTCTC	4 cut(s)	67, 245, 489, 1018
BsmFI	GGGAC	1 cut(s)	1010
BsnI	GGCC	3 cut(s)	505, 704, 893
Bso31I	GGTCTC	2 cut(s)	245, 1018
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp1407I	TGTACA	2 cut(s)	108, 270
Bsp143I	GATC	5 cut(s)	174, 688, 837, 934, 955
BspACI	CCGC	4 cut(s)	329, 563, 701, 903
BspANI	GGCC	3 cut(s)	505, 704, 893
BspCNI	CTCAG	3 cut(s)	660, 751, 856
BspFNI	CGCG	2 cut(s)	331, 987
BspHI	TCATGA	2 cut(s)	579, 937
BspLI	GGNNCC	2 cut(s)	567, 705
BspMI	ACCTGC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	565
BspTNI	GGTCTC	2 cut(s)	245, 1018
BsrDI	GCAATG	1 cut(s)	273
BsrGI	TGTACA	2 cut(s)	108, 270
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	5 cut(s)	174, 688, 837, 934, 955
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	49
Bst4CI	ACNGT	3 cut(s)	750, 778, 850
Bst6I	CTCTTC	3 cut(s)	167, 671, 882
BstACI	GRCGYC	1 cut(s)	5
BstAUI	TGTACA	2 cut(s)	108, 270
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	4 cut(s)	647, 738, 864, 1017
BstF5I	GGATG	3 cut(s)	45, 191, 533
BstFNI	CGCG	2 cut(s)	331, 987
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	5 cut(s)	177, 691, 840, 937, 958
BstMAI	GTCTC	4 cut(s)	67, 245, 489, 1018
BstMBI	GATC	5 cut(s)	174, 688, 837, 934, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 805
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	1026
BstUI	CGCG	2 cut(s)	331, 987
BstV1I	GCAGC	2 cut(s)	354, 423
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BsuRI	GGCC	3 cut(s)	505, 704, 893
BtsCI	GGATG	3 cut(s)	45, 191, 533
BtsIMutI	CAGTG	4 cut(s)	93, 172, 559, 655
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	2 cut(s)	579, 937
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	503, 703
Csp6I	GTAC	5 cut(s)	12, 109, 271, 869, 875
CviAII	CATG	6 cut(s)	580, 616, 658, 938, 968, 981
CviQI	GTAC	5 cut(s)	12, 109, 271, 869, 875
DdeI	CTNAG	4 cut(s)	647, 738, 864, 1017
DpnI	GATC	5 cut(s)	176, 690, 839, 936, 957
DpnII	GATC	5 cut(s)	174, 688, 837, 934, 955
Eam1104I	CTCTTC	3 cut(s)	167, 671, 882
EarI	CTCTTC	3 cut(s)	167, 671, 882
Eco130I	CCWWGG	1 cut(s)	49
Eco31I	GGTCTC	2 cut(s)	245, 1018
Eco57I	CTGAAG	1 cut(s)	148
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	611
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	6 cut(s)	583, 619, 661, 941, 971, 984
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	6 cut(s)	579, 615, 657, 937, 967, 980
FauI	CCCGC	2 cut(s)	336, 910
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	4 cut(s)	368, 437, 564, 702
FokI	GGATG	3 cut(s)	32, 178, 540
Fsp4HI	GCNGC	4 cut(s)	368, 437, 564, 702
FspBI	CTAG	4 cut(s)	50, 80, 297, 494
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	4 cut(s)	368, 437, 564, 702
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	505, 704, 893
HapII	CCGG	1 cut(s)	1028
HhaI	GCGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	583, 619, 661, 941, 971, 984
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	2 cut(s)	313, 472
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	3 cut(s)	214, 433, 634
Hpy166II	GTNNAC	4 cut(s)	109, 424, 677, 787
Hpy188I	TCNGA	4 cut(s)	205, 741, 865, 922
Hpy188III	TCNNGA	4 cut(s)	178, 250, 580, 938
Hpy8I	GTNNAC	4 cut(s)	109, 424, 677, 787
Hpy99I	CGWCG	1 cut(s)	926
HpyAV	CCTTC	3 cut(s)	76, 122, 643
HpyCH4III	ACNGT	3 cut(s)	750, 778, 850
HpyCH4IV	ACGT	2 cut(s)	5, 961
HpyCH4V	TGCA	7 cut(s)	158, 170, 191, 266, 284, 418, 755
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 805
HpyF3I	CTNAG	4 cut(s)	647, 738, 864, 1017
HpySE526I	ACGT	2 cut(s)	5, 961
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	583, 619, 661, 941, 971, 984
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	5 cut(s)	174, 688, 837, 934, 955
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	88
LpnPI	CCDG	9 cut(s)	14, 88, 99, 163, 323, 404, 641, 816, 1041
Lsp1109I	GCAGC	2 cut(s)	354, 423
LweI	GCATC	6 cut(s)	54, 200, 201, 585, 982, 1011
MaeI	CTAG	4 cut(s)	50, 80, 297, 494
MaeII	ACGT	2 cut(s)	5, 961
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	176, 690, 839, 936, 957
MboI	GATC	5 cut(s)	174, 688, 837, 934, 955
MboII	GAAGA	7 cut(s)	127, 154, 434, 467, 628, 658, 899
MflI	RGATCY	1 cut(s)	688
MhlI	GDGCHC	1 cut(s)	810
MluCI	AATT	7 cut(s)	375, 392, 413, 451, 611, 756, 916
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	945
MnlI	CCTC	7 cut(s)	36, 366, 426, 650, 656, 859, 883
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	6 cut(s)	198, 378, 395, 516, 572, 684
MslI	CAYNNNNRTG	1 cut(s)	979
MspA1I	CMGCKG	1 cut(s)	818
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	1 cut(s)	1028
MvnI	CGCG	2 cut(s)	331, 987
MwoI	GCNNNNNNNGC	2 cut(s)	603, 805
NciI	CCSGG	1 cut(s)	1028
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	5 cut(s)	174, 688, 837, 934, 955
NlaIII	CATG	6 cut(s)	583, 619, 661, 941, 971, 984
NlaIV	GGNNCC	2 cut(s)	567, 705
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	1 cut(s)	971
PagI	TCATGA	2 cut(s)	579, 937
PaqCI	CACCTGC	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	472
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	4 cut(s)	369, 438, 565, 703
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PshBI	ATTAAT	2 cut(s)	378, 395
PspN4I	GGNNCC	2 cut(s)	567, 705
PspPI	GGNCC	2 cut(s)	503, 703
PsuI	RGATCY	1 cut(s)	688
PsyI	GACNNNGTC	1 cut(s)	1010
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	5 cut(s)	13, 110, 272, 870, 876
RsaNI	GTAC	5 cut(s)	12, 109, 271, 869, 875
RseI	CAYNNNNRTG	1 cut(s)	979
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	6 cut(s)	198, 378, 395, 516, 572, 684
SatI	GCNGC	4 cut(s)	368, 437, 564, 702
Sau3AI	GATC	5 cut(s)	174, 688, 837, 934, 955
Sau96I	GGNCC	2 cut(s)	503, 703
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	1028
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	6 cut(s)	54, 200, 201, 585, 982, 1011
SmiMI	CAYNNNNRTG	1 cut(s)	979
SmlI	CTYRAG	2 cut(s)	430, 996
SmoI	CTYRAG	2 cut(s)	430, 996
Sse9I	AATT	7 cut(s)	375, 392, 413, 451, 611, 756, 916
SsiI	CCGC	4 cut(s)	329, 563, 701, 903
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	4 cut(s)	50, 80, 297, 494
StyD4I	CCNGG	1 cut(s)	1026
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	3 cut(s)	750, 778, 850
TaiI	ACGT	2 cut(s)	8, 964
TaqI	TCGA	2 cut(s)	249, 1005
TasI	AATT	7 cut(s)	375, 392, 413, 451, 611, 756, 916
TatI	WGTACW	4 cut(s)	11, 108, 270, 874
TauI	GCSGC	2 cut(s)	566, 704
TfiI	GAWTC	1 cut(s)	472
Tru1I	TTAA	6 cut(s)	198, 378, 395, 516, 572, 684
Tru9I	TTAA	6 cut(s)	198, 378, 395, 516, 572, 684
TscAI	CASTG	4 cut(s)	93, 172, 559, 655
TseI	GCWGC	2 cut(s)	367, 436
TspDTI	ATGAA	2 cut(s)	58, 604
TspRI	CASTG	4 cut(s)	93, 172, 559, 655
Tth111I	GACNNNGTC	1 cut(s)	1010
VspI	ATTAAT	2 cut(s)	378, 395
XapI	RAATTY	2 cut(s)	451, 611
XceI	RCATGY	1 cut(s)	971
XmaJI	CCTAGG	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	4 cut(s)	50, 80, 297, 494
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.