Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

28124821 .. 28127305

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1136500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCTGCATCAACTTCTCACCATCCATTGGCTTTTGCCTTTGGCGTTCTAGGCAACATTGCCTCGTTCATCGTTTTTCTAGCTCCGCTGCCGACGTTTTGGAGGGTGTATAAGAAGAAATCGACGGAGGGATTTCAATCAGTTCCATATGTGTTTGCACTGTTCACTGCAACGATATGGATATACTATGCATTCCTCAAGTCTAATGAGATCCTTCTCATCACCATCAACTCATTCGGTTGTGTCATAGAGACCATTTATATTGCAATTTACCTTACATATGCAACTAAGCAAGCGAGGGTGTCCACTCTGACGCTGCTTTTTCTGGTGAACTTTGGGGGATTTTGCTTGATTCTTCTTCTGGCTCACTTCTTATCACAAGGGCCGACCCGCGTCGCAGTTCTAGGATGGGTTTGTGTGACTTTCTCTGTCAGTGTCTTTGCAGCACCTTTAAGCGCCATGAAAATGGTTATCCGCACCAAGAGCGTGGAGTTCATGCCATTTAATTTATCCTTCTTCCTCACCCTAAGTGCCGTTATGTGGCTCAGCTATGGCTTACTCCTCAAGGATCTCTACGTTGCAACCCCAAACATTGTTGGTTTCTCCTTTGGGTTGGTTCAGATGGCCCTCTATGCAAAGTACAGGAATAACAAAACAAATGTGGAGGAGAAGCTACCAGAACAGAAAGCTGATGTTGTGAAGCAAATGACAATTTTGACTACTACTCCTGAGCTGGAGGTACAAGTCCAAGCAGCTGTAAGCTCCCATGCCAATAGTACTGATGCTCATCCAAGCTCTGAGCATAACAATGACCAATATATGCATGCACAAACATGCCATAACGAGAAAATCATCGAACCCTCCATGGCCGGCCAACTTGTTACATGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

299

Amino Acids

33.19

Weight (kDa)

8.21

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	5.1e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	2.5e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	1 cut(s)	393
AciI	CCGC	3 cut(s)	86, 391, 475
AclWI	GGATC	2 cut(s)	205, 576
AcoI	YGGCCR	2 cut(s)	867, 871
AfaI	GTAC	3 cut(s)	641, 741, 778
AfiI	CCNNNNNNNGG	2 cut(s)	28, 540
AflIII	ACRYGT	1 cut(s)	884
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	8 cut(s)	83, 549, 673, 689, 733, 755, 762, 795
AluI	AGCT	8 cut(s)	83, 549, 673, 689, 733, 755, 762, 795
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	2 cut(s)	205, 576
AoxI	GGCC	4 cut(s)	383, 624, 867, 871
ApeKI	GCWGC	4 cut(s)	88, 316, 443, 752
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	383, 625
AsuHPI	GGTGA	4 cut(s)	11, 214, 340, 514
BbvI	GCAGC	4 cut(s)	75, 303, 455, 764
BccI	CCATC	4 cut(s)	30, 233, 402, 616
BceAI	ACGGC	1 cut(s)	518
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	50, 80, 404
BfoI	RGCGCY	1 cut(s)	459
BisI	GCNGC	4 cut(s)	89, 317, 444, 753
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	4 cut(s)	90, 318, 445, 754
BmcAI	AGTACT	1 cut(s)	778
BmgT120I	GGNCC	2 cut(s)	383, 625
BmsI	GCATC	2 cut(s)	17, 772
BoxI	GACNNNNGTC	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	729
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	182, 548
BsaBI	GATNNNNATC	2 cut(s)	136, 786
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	864
BsaXI	ACNNNNNCTCC	2 cut(s)	709, 739
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 540
Bse118I	RCCGGY	1 cut(s)	869
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	2 cut(s)	136, 786
BseDI	CCNNGG	1 cut(s)	864
BseGI	GGATG	3 cut(s)	22, 413, 787
BseJI	GATNNNNATC	2 cut(s)	136, 786
BseLI	CCNNNNNNNGG	2 cut(s)	28, 540
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	559, 720, 789
BseRI	GAGGAG	2 cut(s)	551, 680
BseXI	GCAGC	4 cut(s)	75, 303, 455, 764
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	4 cut(s)	385, 626, 869, 873
BsiSI	CCGG	1 cut(s)	870
BslI	CCNNNNNNNGG	2 cut(s)	28, 540
BsmAI	GTCTC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	4 cut(s)	385, 626, 869, 873
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	210, 568
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	3 cut(s)	86, 391, 475
BspANI	GGCC	4 cut(s)	385, 626, 869, 873
BspCNI	CTCAG	3 cut(s)	558, 721, 790
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	2 cut(s)	205, 576
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	869
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	1 cut(s)	864
BssMI	GATC	2 cut(s)	210, 568
BssT1I	CCWWGG	1 cut(s)	864
Bst4CI	ACNGT	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	294, 825, 871
BstDEI	CTNAG	5 cut(s)	288, 527, 545, 729, 798
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	3 cut(s)	22, 413, 787
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	2 cut(s)	213, 571
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	210, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 483, 632
BstNSI	RCATGY	3 cut(s)	827, 837, 888
BstPAI	GACNNNNGTC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	4 cut(s)	75, 303, 455, 764
BstX2I	RGATCY	2 cut(s)	210, 568
BstXI	CCANNNNNNTGG	2 cut(s)	466, 487
BstYI	RGATCY	2 cut(s)	210, 568
BsuRI	GGCC	4 cut(s)	385, 626, 869, 873
BtgI	CCRYGG	1 cut(s)	864
BtsCI	GGATG	3 cut(s)	22, 413, 787
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	158, 165, 439
Cac8I	GCNNGC	3 cut(s)	294, 825, 871
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	2 cut(s)	383, 625
CseI	GACGC	2 cut(s)	322, 382
Csp6I	GTAC	3 cut(s)	640, 740, 777
CviAII	CATG	7 cut(s)	460, 496, 767, 824, 834, 865, 885
CviQI	GTAC	3 cut(s)	640, 740, 777
DdeI	CTNAG	5 cut(s)	288, 527, 545, 729, 798
DpnI	GATC	2 cut(s)	212, 570
DpnII	GATC	2 cut(s)	210, 568
EaeI	YGGCCR	2 cut(s)	867, 871
Eco130I	CCWWGG	1 cut(s)	864
Eco31I	GGTCTC	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	864
EcoT22I	ATGCAT	2 cut(s)	193, 825
ErhI	CCWWGG	1 cut(s)	864
FaeI	CATG	7 cut(s)	463, 499, 770, 827, 837, 868, 888
FatI	CATG	7 cut(s)	459, 495, 766, 823, 833, 864, 884
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	2 cut(s)	148, 280
Fnu4HI	GCNGC	4 cut(s)	89, 317, 444, 753
FokI	GGATG	3 cut(s)	9, 420, 774
FseI	GGCCGGCC	1 cut(s)	873
Fsp4HI	GCNGC	4 cut(s)	89, 317, 444, 753
FspBI	CTAG	3 cut(s)	50, 80, 404
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	4 cut(s)	89, 317, 444, 753
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	4 cut(s)	385, 626, 869, 873
HapII	CCGG	1 cut(s)	870
HgaI	GACGC	2 cut(s)	322, 382
HhaI	GCGC	1 cut(s)	458
Hin1II	CATG	7 cut(s)	463, 499, 770, 827, 837, 868, 888
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	4 cut(s)	11, 214, 340, 514
Hpy166II	GTNNAC	3 cut(s)	165, 306, 331
Hpy188I	TCNGA	3 cut(s)	312, 621, 799
Hpy188III	TCNNGA	1 cut(s)	728
Hpy8I	GTNNAC	3 cut(s)	165, 306, 331
Hpy99I	CGWCG	3 cut(s)	97, 127, 398
HpyAV	CCTTC	2 cut(s)	224, 523
HpyCH4III	ACNGT	1 cut(s)	162
HpyCH4IV	ACGT	2 cut(s)	95, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 483, 632
HpyF3I	CTNAG	5 cut(s)	288, 527, 545, 729, 798
HpySE526I	ACGT	2 cut(s)	95, 576
Hsp92II	CATG	7 cut(s)	463, 499, 770, 827, 837, 868, 888
HspAI	GCGC	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	869
KroNI	GCCGGC	1 cut(s)	871
Kzo9I	GATC	2 cut(s)	210, 568
LmnI	GCTCC	2 cut(s)	88, 767
LpnPI	CCDG	7 cut(s)	311, 347, 628, 690, 719, 741, 883
Lsp1109I	GCAGC	4 cut(s)	75, 303, 455, 764
LweI	GCATC	2 cut(s)	17, 772
MaeI	CTAG	3 cut(s)	50, 80, 404
MaeII	ACGT	2 cut(s)	95, 576
MaeIII	GTNAC	2 cut(s)	418, 880
MalI	GATC	2 cut(s)	212, 570
MboI	GATC	2 cut(s)	210, 568
MboII	GAAGA	4 cut(s)	127, 347, 350, 508
MflI	RGATCY	2 cut(s)	210, 568
MluCI	AATT	3 cut(s)	267, 505, 711
Mph1103I	ATGCAT	2 cut(s)	193, 825
MroNI	GCCGGC	1 cut(s)	869
MseI	TTAA	2 cut(s)	452, 504
MslI	CAYNNNNRTG	3 cut(s)	464, 807, 832
MspA1I	CMGCKG	2 cut(s)	88, 755
MspI	CCGG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	191
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	51, 483, 632
NaeI	GCCGGC	1 cut(s)	871
NcoI	CCATGG	1 cut(s)	864
NdeI	CATATG	2 cut(s)	148, 280
NdeII	GATC	2 cut(s)	210, 568
NgoMIV	GCCGGC	1 cut(s)	869
NlaIII	CATG	7 cut(s)	463, 499, 770, 827, 837, 868, 888
NmuCI	GTSAC	1 cut(s)	418
NsiI	ATGCAT	2 cut(s)	193, 825
NspI	RCATGY	3 cut(s)	827, 837, 888
PaeI	GCATGC	1 cut(s)	827
PciI	ACATGT	1 cut(s)	884
PctI	GAATGC	1 cut(s)	191
PdiI	GCCGGC	1 cut(s)	871
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	4 cut(s)	90, 318, 445, 754
PscI	ACATGT	1 cut(s)	884
PshAI	GACNNNNGTC	1 cut(s)	392
PspPI	GGNCC	2 cut(s)	383, 625
PsuI	RGATCY	2 cut(s)	210, 568
PvuII	CAGCTG	1 cut(s)	755
RigI	GGCCGGCC	1 cut(s)	873
RsaI	GTAC	3 cut(s)	641, 741, 778
RsaNI	GTAC	3 cut(s)	640, 740, 777
RseI	CAYNNNNRTG	3 cut(s)	464, 807, 832
SaqAI	TTAA	2 cut(s)	452, 504
SatI	GCNGC	4 cut(s)	89, 317, 444, 753
Sau3AI	GATC	2 cut(s)	210, 568
Sau96I	GGNCC	2 cut(s)	383, 625
ScaI	AGTACT	1 cut(s)	778
SfaNI	GCATC	2 cut(s)	17, 772
SmiMI	CAYNNNNRTG	3 cut(s)	464, 807, 832
SmlI	CTYRAG	2 cut(s)	197, 563
SmoI	CTYRAG	2 cut(s)	197, 563
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	3 cut(s)	267, 505, 711
SsiI	CCGC	3 cut(s)	86, 391, 475
SspMI	CTAG	3 cut(s)	50, 80, 404
StyI	CCWWGG	1 cut(s)	864
TaaI	ACNGT	1 cut(s)	162
TaiI	ACGT	2 cut(s)	98, 579
TaqI	TCGA	2 cut(s)	122, 855
TasI	AATT	3 cut(s)	267, 505, 711
TatI	WGTACW	2 cut(s)	639, 776
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	452, 504
Tru9I	TTAA	2 cut(s)	452, 504
TscAI	CASTG	3 cut(s)	165, 172, 439
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	4 cut(s)	88, 316, 443, 752
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	3 cut(s)	58, 476, 484
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	3 cut(s)	165, 172, 439
Van91I	CCANNNNNTGG	1 cut(s)	28
XceI	RCATGY	3 cut(s)	827, 837, 888
XspI	CTAG	3 cut(s)	50, 80, 404
ZrmI	AGTACT	1 cut(s)	778
Zsp2I	ATGCAT	2 cut(s)	193, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.