Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Reverse (-)

7971647 .. 7973995

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCTCTCTTCGACACTCATAACACATGGGCCTTTGTTTTCGGCTTGCTCGGAAACCTCATTTCCTTTGCTGTTTTCCTCTCTCCCGTGCCAACGTTCTATAGGATTTGTAAGAAGAAAACCACAGAAGGATTTCAATCTATTCCCTATGTGGTGGCGCTCTTCAGCGCGATGCTTTGGCTCTACTACGCTACTCAGAAGAAAGATGTCTTCCTTCTCGTCACCATCAACAGCTTTGGTTGCTTCATTGAAACCATATACATCTCCATCTTTGTTGCCTTCGCATCCAAGAAAGCCCGAATGCTAACGGTGAAGCTCTTGTTGCTAATGAACTTTGGAGGGTTCTGTTTGATTCTCCTCCTCTGCCAATTCTTGGCAAAAGGAACCACACGTGCGAAGATCATTGGAGGTATCTGTGTCGGATTCTCTGTCTGCGTTTTTGCTGCGCCGCTTAGCATTATCAGAACGGTGATAAAGACGAAAAGTGTGGAGTACATGCCGTTTAGCTTATCCTTGACTCTTACCATCAGTGCGGTCATATGGCTCCTTTATGGTCTTGCTCTTAAGGATATCTATGTTGCCTTCCCAAACGTGATTGGGTTTGTTCTAGGTGCACTTCAAATGATACTCTATGTGGTTTACAAATACTGCAAAACGCCGTCGGATTTGGTTGAGAAAGAACTTGAGGCTGCGAAATTGCCAGAAGTGAGCATCGATATGGTGAAGTTAGGTACACTCACATCTCCTGAACCAGTAGCGATCACCGTCGTCCGATCGGTGAACACATGTAACTGTAACGATCGAAATGCTGAGATTGAAAATGGTCAGGGAGTTAGAAACAGTGCTGCAACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

285

Amino Acids

31.49

Weight (kDa)

9.08

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	2e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	134 - 218	3.4e-30	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccII	CGCG	1 cut(s)	170
AciI	CCGC	2 cut(s)	449, 533
AclI	AACGTT	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	494, 733
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	563
AflIII	ACRYGT	2 cut(s)	389, 785
AgsI	TTSAA	4 cut(s)	137, 251, 620, 818
AluBI	AGCT	3 cut(s)	234, 316, 507
AluI	AGCT	3 cut(s)	234, 316, 507
Alw21I	GWGCWC	1 cut(s)	616
Alw44I	GTGCAC	1 cut(s)	612
AoxI	GGCC	1 cut(s)	30
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	3 cut(s)	443, 689, 845
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	3 cut(s)	160, 170, 448
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	6 cut(s)	214, 322, 481, 733, 754, 790
BaeGI	GKGCMC	1 cut(s)	616
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	3 cut(s)	430, 676, 832
BccI	CCATC	3 cut(s)	233, 275, 533
BceAI	ACGGC	2 cut(s)	484, 643
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	161
BfrI	CTTAAG	1 cut(s)	563
BisI	GCNGC	4 cut(s)	444, 449, 690, 846
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	4 cut(s)	445, 450, 691, 847
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	385, 545
BmsI	GCATC	3 cut(s)	162, 293, 720
BpiI	GAAGAC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	704
Bsa29I	ATCGAT	1 cut(s)	714
BsaAI	YACGTR	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	752
Bse8I	GATNNNNATC	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	714
BseGI	GGATG	1 cut(s)	284
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMII	CTCAG	2 cut(s)	209, 801
BseNI	ACTGG	1 cut(s)	752
BseRI	GAGGAG	2 cut(s)	347, 350
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	430, 676, 832
Bsh1236I	CGCG	1 cut(s)	170
Bsh1285I	CGRYCG	2 cut(s)	776, 802
BshFI	GGCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	714
BsiEI	CGRYCG	2 cut(s)	776, 802
BsiHKAI	GWGCWC	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	399, 759, 773, 799
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	2 cut(s)	449, 533
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	208, 802
BspDI	ATCGAT	1 cut(s)	714
BspFNI	CGCG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	385, 545
BspQI	GCTCTTC	1 cut(s)	167
BspTI	CTTAAG	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	752
BssMI	GATC	4 cut(s)	399, 759, 773, 799
Bst4CI	ACNGT	5 cut(s)	310, 469, 766, 794, 842
Bst6I	CTCTTC	2 cut(s)	14, 167
BstAFI	CTTAAG	1 cut(s)	563
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	195, 452, 810
BstF5I	GGATG	1 cut(s)	284
BstFNI	CGCG	1 cut(s)	170
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	3 cut(s)	160, 170, 448
BstKTI	GATC	4 cut(s)	402, 762, 776, 802
BstMBI	GATC	4 cut(s)	399, 759, 773, 799
BstMCI	CGRYCG	2 cut(s)	776, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 322
BstNSI	RCATGY	2 cut(s)	499, 789
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	616
BstUI	CGCG	1 cut(s)	170
BstV1I	GCAGC	3 cut(s)	430, 676, 832
BstV2I	GAAGAC	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	714
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	185
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	2 cut(s)	535, 847
Cac8I	GCNNGC	1 cut(s)	47
CfoI	GCGC	3 cut(s)	160, 170, 448
Cfr13I	GGNCC	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	714
Csp6I	GTAC	2 cut(s)	493, 732
CviAII	CATG	3 cut(s)	27, 496, 786
CviQI	GTAC	2 cut(s)	493, 732
DdeI	CTNAG	3 cut(s)	195, 452, 810
DpnI	GATC	4 cut(s)	401, 761, 775, 801
DpnII	GATC	4 cut(s)	399, 759, 773, 799
Eam1104I	CTCTTC	2 cut(s)	14, 167
EarI	CTCTTC	2 cut(s)	14, 167
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	148
Eco72I	CACGTG	1 cut(s)	392
EcoRV	GATATC	1 cut(s)	571
FaeI	CATG	3 cut(s)	30, 499, 789
FatI	CATG	3 cut(s)	26, 495, 785
FauNDI	CATATG	1 cut(s)	539
Fnu4HI	GCNGC	4 cut(s)	444, 449, 690, 846
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	444, 449, 690, 846
FspBI	CTAG	1 cut(s)	608
GlaI	GCGC	3 cut(s)	159, 169, 447
GluI	GCNGC	4 cut(s)	444, 449, 690, 846
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	32
HhaI	GCGC	3 cut(s)	160, 170, 448
Hin1II	CATG	3 cut(s)	30, 499, 789
Hin6I	GCGC	3 cut(s)	158, 168, 446
HinP1I	GCGC	3 cut(s)	158, 168, 446
HinfI	GANTC	3 cut(s)	352, 423, 517
HphI	GGTGA	6 cut(s)	214, 322, 481, 733, 754, 790
Hpy166II	GTNNAC	4 cut(s)	614, 640, 734, 781
Hpy188I	TCNGA	6 cut(s)	53, 198, 422, 464, 664, 773
Hpy188III	TCNNGA	1 cut(s)	746
Hpy8I	GTNNAC	4 cut(s)	614, 640, 734, 781
Hpy99I	CGWCG	2 cut(s)	664, 770
HpyAV	CCTTC	4 cut(s)	122, 224, 289, 592
HpyCH4III	ACNGT	5 cut(s)	310, 469, 766, 794, 842
HpyCH4IV	ACGT	3 cut(s)	95, 391, 591
HpyCH4V	TGCA	3 cut(s)	614, 651, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 322
HpyF3I	CTNAG	3 cut(s)	195, 452, 810
HpySE526I	ACGT	3 cut(s)	95, 391, 591
Hsp92II	CATG	3 cut(s)	30, 499, 789
HspAI	GCGC	3 cut(s)	158, 168, 446
Kzo9I	GATC	4 cut(s)	399, 759, 773, 799
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	549
LpnPI	CCDG	4 cut(s)	714, 759, 765, 812
Lsp1109I	GCAGC	3 cut(s)	430, 676, 832
LweI	GCATC	3 cut(s)	162, 293, 720
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	3 cut(s)	95, 391, 591
MaeIII	GTNAC	3 cut(s)	220, 788, 794
MalI	GATC	4 cut(s)	401, 761, 775, 801
MboI	GATC	4 cut(s)	399, 759, 773, 799
MboII	GAAGA	5 cut(s)	127, 154, 202, 211, 409
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	2 cut(s)	368, 695
MlyI	GAGTC	1 cut(s)	511
MmeI	TCCRAC	2 cut(s)	400, 642
MnlI	CCTC	7 cut(s)	68, 89, 332, 368, 371, 401, 679
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	1 cut(s)	716
MspCI	CTTAAG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	306
MvnI	CGCG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	240, 322
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	4 cut(s)	399, 759, 773, 799
NlaIII	CATG	3 cut(s)	30, 499, 789
NlaIV	GGNNCC	2 cut(s)	385, 545
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	2 cut(s)	499, 789
PciI	ACATGT	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	352, 423
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	445, 450, 691, 847
Ple19I	CGATCG	2 cut(s)	776, 802
PleI	GAGTC	1 cut(s)	511
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	511
Ppu21I	YACGTR	1 cut(s)	392
PscI	ACATGT	1 cut(s)	785
Psp1406I	AACGTT	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	385, 545
PspPI	GGNCC	1 cut(s)	30
PvuI	CGATCG	2 cut(s)	776, 802
RsaI	GTAC	2 cut(s)	494, 733
RsaNI	GTAC	2 cut(s)	493, 732
RseI	CAYNNNNRTG	1 cut(s)	716
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	4 cut(s)	444, 449, 690, 846
Sau3AI	GATC	4 cut(s)	399, 759, 773, 799
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	511
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	162, 293, 720
SfcI	CTRYAG	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	563, 683
SmoI	CTYRAG	2 cut(s)	563, 683
Sse9I	AATT	2 cut(s)	368, 695
SsiI	CCGC	2 cut(s)	449, 533
SspMI	CTAG	1 cut(s)	608
TaaI	ACNGT	5 cut(s)	310, 469, 766, 794, 842
TaiI	ACGT	3 cut(s)	98, 394, 594
TaqI	TCGA	3 cut(s)	12, 714, 802
TasI	AATT	2 cut(s)	368, 695
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	451
TfiI	GAWTC	2 cut(s)	352, 423
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	535, 847
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	443, 689, 845
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	235, 344
TspRI	CASTG	2 cut(s)	535, 847
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	563
VneI	GTGCAC	1 cut(s)	612
XceI	RCATGY	2 cut(s)	499, 789
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.