Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Reverse (-)

60808861 .. 60811220

Gene Structure 2360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004618

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTGCACGAAAGTAGTGCCAGAGCCAGAGTTGGAATCCCAGGAGAAACGGCGAAAACTAATGGAAAGTTATAAATGGAAAAAGGAAGTGGCCGAGGGACAGTCACGTGAAAGAGAAACTGCCATGACGTCAAATACTGCTCACTCCCCTCTGGTTTTTGCCTTTGGCATCCTAGGTAACATTGTCTCCTTCATCGTGTTTCTATCTCCAGTGCCAACATTTTTCAGGGTGTACAAGAAGAAATCAACAGAAGGATTTCAATCAGTTCCATATGTTTTTGCACTCTTCAGTGCAACGATCTGGATTTACTATGCATCCCTTAAATCTGATGAGATGCTTCTTATTACCATCAATGGCTTCGGTTGTGTCATCGAGACCATTTATATTGCAATGTACATTACATATGCACCAAAGCAAGCTAGGGTGAACACCTTGAGGCTGCTTCTTCTTGTGAATTTTGGGGGATTTTGCTTGATTCTTCTTTTATCTCACTTCCTAGCACAAGGGCCAACTCGGGTTAAAGTTATTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCAGCACCTTTAAGCATCATGAGATTGGTTATTCGCACCAAGAGCGTAGAATTCATGCCGTTTTCTCTGTCCTTCTTCCTCACCCTCAGTGCTATCATGTGGCTCTTCTATGGTTTACTCCTTAAAGATCTCTATGTTGCGGCCCCAAACATACTCGGTTTCAGTTTTGGTGTGGCTCAGATGATACTGTATGCAATTTACCGAAACAACAAAACGGTTATTGTGGACAAGGAGAAGCTACCAGAGCACAAAACAGCTGATGACATTGTGAAGCAGATCAACATCACGGTTTTGCCCACTTCTGAGTTACCTGTAAAAGAAGAGGCCGTAAGCCTCCCCCGTGCCAATAATTCCGACGAAAACTATGATGATCGTGAGCAAAACGAACACGATCAACGTGAGCATGTTCCACAGCCATGTCACGTTGATGCTCAAGGCATCGACTTGGTCTCTAAGCAAGTCCCGGTTCTTGTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

348

Amino Acids

39.33

Weight (kDa)

8.16

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	54 - 139	2.8e-27	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	175 - 259	5.1e-28	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AatII	GACGTC	1 cut(s)	131
AciI	CCGC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	2 cut(s)	454, 614
AcuI	CTGAAG	1 cut(s)	271
AcvI	CACGTG	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	233, 395
AgsI	TTSAA	2 cut(s)	260, 1040
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	4 cut(s)	419, 545, 802, 821
AluI	AGCT	4 cut(s)	419, 545, 802, 821
Alw21I	GWGCWC	2 cut(s)	8, 813
Alw26I	GTCTC	3 cut(s)	190, 368, 1018
Alw44I	GTGCAC	1 cut(s)	4
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	4 cut(s)	90, 506, 705, 888
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	2 cut(s)	439, 566
ApoI	RAATTY	2 cut(s)	454, 614
Asp700I	GAANNNNTTC	1 cut(s)	255
AspA2I	CCTAGG	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	506, 706
AsuC2I	CCSGG	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	436, 637
AvaI	CYCGRG	1 cut(s)	513
AvrII	CCTAGG	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	8, 813
BbvI	GCAGC	2 cut(s)	426, 578
BccI	CCATC	2 cut(s)	356, 525
BceAI	ACGGC	3 cut(s)	65, 607, 875
BcgI	CGANNNNNNTGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	1028
BcoDI	GTCTC	3 cut(s)	190, 368, 1018
BfaI	CTAG	3 cut(s)	173, 420, 497
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	3 cut(s)	440, 567, 705
BlnI	CCTAGG	1 cut(s)	172
BlsI	GCNGC	3 cut(s)	441, 568, 706
Bme1390I	CCNGG	2 cut(s)	41, 1028
BmeT110I	CYCGRG	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	506, 706
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	41, 1028
BmsI	GCATC	6 cut(s)	177, 323, 324, 588, 982, 1011
BpmI	CTGGAG	1 cut(s)	192
BpuEI	CTTGAG	2 cut(s)	454, 981
BpuMI	CCSGG	1 cut(s)	1028
BsaAI	YACGTR	1 cut(s)	107
BsaBI	GATNNNNATC	2 cut(s)	259, 845
BsaHI	GRCGYC	1 cut(s)	128
BsaI	GGTCTC	2 cut(s)	368, 1018
BsaJI	CCNNGG	3 cut(s)	39, 93, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	2 cut(s)	259, 845
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	3 cut(s)	39, 93, 172
BseGI	GGATG	3 cut(s)	168, 314, 536
BseJI	GATNNNNATC	2 cut(s)	259, 845
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	3 cut(s)	664, 755, 858
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	2 cut(s)	426, 578
BshFI	GGCC	4 cut(s)	92, 508, 707, 890
BsiHKAI	GWGCWC	2 cut(s)	8, 813
BsiHKCI	CYCGRG	1 cut(s)	513
BsiSI	CCGG	1 cut(s)	1028
BslFI	GGGAC	2 cut(s)	111, 1010
BsmAI	GTCTC	3 cut(s)	190, 368, 1018
BsmFI	GGGAC	2 cut(s)	111, 1010
BsnI	GGCC	4 cut(s)	92, 508, 707, 890
Bso31I	GGTCTC	2 cut(s)	368, 1018
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	8, 813
Bsp1407I	TGTACA	2 cut(s)	231, 393
Bsp143I	GATC	5 cut(s)	297, 691, 840, 934, 955
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	4 cut(s)	92, 508, 707, 890
BspCNI	CTCAG	3 cut(s)	663, 754, 859
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	1 cut(s)	708
BspQI	GCTCTTC	1 cut(s)	674
BspTNI	GGTCTC	2 cut(s)	368, 1018
BsrDI	GCAATG	1 cut(s)	396
BsrGI	TGTACA	2 cut(s)	231, 393
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	39, 93, 172
BssMI	GATC	5 cut(s)	297, 691, 840, 934, 955
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	4 cut(s)	102, 753, 781, 853
Bst6I	CTCTTC	3 cut(s)	290, 674, 879
BstACI	GRCGYC	1 cut(s)	128
BstAUI	TGTACA	2 cut(s)	231, 393
BstBAI	YACGTR	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	4 cut(s)	650, 741, 867, 1017
BstF5I	GGATG	3 cut(s)	168, 314, 536
BstKTI	GATC	5 cut(s)	300, 694, 843, 937, 958
BstMAI	GTCTC	3 cut(s)	190, 368, 1018
BstMBI	GATC	5 cut(s)	297, 691, 840, 934, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	606, 808
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	39, 1026
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	426, 578
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	92, 508, 707, 890
BtsCI	GGATG	3 cut(s)	168, 314, 536
BtsIMutI	CAGTG	4 cut(s)	216, 295, 562, 658
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	1 cut(s)	582
Cfr13I	GGNCC	2 cut(s)	506, 706
Csp6I	GTAC	2 cut(s)	232, 394
CviAII	CATG	6 cut(s)	124, 583, 619, 661, 968, 981
CviQI	GTAC	2 cut(s)	232, 394
DdeI	CTNAG	4 cut(s)	650, 741, 867, 1017
DpnI	GATC	5 cut(s)	299, 693, 842, 936, 957
DpnII	GATC	5 cut(s)	297, 691, 840, 934, 955
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	3 cut(s)	290, 674, 879
EarI	CTCTTC	3 cut(s)	290, 674, 879
Eco130I	CCWWGG	1 cut(s)	172
Eco31I	GGTCTC	2 cut(s)	368, 1018
Eco57I	CTGAAG	1 cut(s)	271
Eco72I	CACGTG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	172
EcoT22I	ATGCAT	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	6 cut(s)	127, 586, 622, 664, 971, 984
FaqI	GGGAC	2 cut(s)	111, 1010
FatI	CATG	6 cut(s)	123, 582, 618, 660, 967, 980
FauNDI	CATATG	2 cut(s)	271, 403
Fnu4HI	GCNGC	3 cut(s)	440, 567, 705
FokI	GGATG	3 cut(s)	155, 301, 543
Fsp4HI	GCNGC	3 cut(s)	440, 567, 705
FspBI	CTAG	3 cut(s)	173, 420, 497
GluI	GCNGC	3 cut(s)	440, 567, 705
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	92, 508, 707, 890
HapII	CCGG	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	127, 586, 622, 664, 971, 984
HinfI	GANTC	2 cut(s)	35, 475
HpaII	CCGG	1 cut(s)	1028
HphI	GGTGA	2 cut(s)	436, 637
Hpy166II	GTNNAC	5 cut(s)	6, 232, 427, 680, 790
Hpy188I	TCNGA	4 cut(s)	328, 744, 868, 919
Hpy188III	TCNNGA	4 cut(s)	301, 373, 583, 938
Hpy8I	GTNNAC	5 cut(s)	6, 232, 427, 680, 790
Hpy99I	CGWCG	1 cut(s)	923
HpyAV	CCTTC	3 cut(s)	199, 245, 646
HpyCH4III	ACNGT	4 cut(s)	102, 753, 781, 853
HpyCH4IV	ACGT	4 cut(s)	106, 128, 961, 987
HpyCH4V	TGCA	8 cut(s)	6, 281, 293, 314, 389, 407, 566, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	606, 808
HpyF3I	CTNAG	4 cut(s)	650, 741, 867, 1017
HpySE526I	ACGT	4 cut(s)	106, 128, 961, 987
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	127, 586, 622, 664, 971, 984
Kzo9I	GATC	5 cut(s)	297, 691, 840, 934, 955
LguI	GCTCTTC	1 cut(s)	674
Lsp1109I	GCAGC	2 cut(s)	426, 578
LweI	GCATC	6 cut(s)	177, 323, 324, 588, 982, 1011
MaeI	CTAG	3 cut(s)	173, 420, 497
MaeII	ACGT	4 cut(s)	106, 128, 961, 987
MaeIII	GTNAC	4 cut(s)	102, 176, 870, 983
MalI	GATC	5 cut(s)	299, 693, 842, 936, 957
MboI	GATC	5 cut(s)	297, 691, 840, 934, 955
MboII	GAAGA	7 cut(s)	250, 277, 437, 470, 631, 661, 896
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	8, 813
MluCI	AATT	4 cut(s)	454, 614, 759, 913
MmeI	TCCRAC	2 cut(s)	12, 942
MnlI	CCTC	7 cut(s)	88, 159, 429, 653, 659, 880, 908
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	4 cut(s)	321, 519, 575, 687
MslI	CAYNNNNRTG	2 cut(s)	979, 990
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	1 cut(s)	1028
MspR9I	CCNGG	2 cut(s)	41, 1028
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	606, 808
NciI	CCSGG	1 cut(s)	1028
NdeI	CATATG	2 cut(s)	271, 403
NdeII	GATC	5 cut(s)	297, 691, 840, 934, 955
NlaIII	CATG	6 cut(s)	127, 586, 622, 664, 971, 984
NlaIV	GGNNCC	1 cut(s)	708
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	102, 983
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	971
PagI	TCATGA	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	674
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	35, 475
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	3 cut(s)	441, 568, 706
PmaCI	CACGTG	1 cut(s)	107
PmlI	CACGTG	1 cut(s)	107
Ppu21I	YACGTR	1 cut(s)	107
PsiI	TTATAA	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	2 cut(s)	506, 706
PsuI	RGATCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	1010
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	233, 395
RsaNI	GTAC	2 cut(s)	232, 394
RseI	CAYNNNNRTG	2 cut(s)	979, 990
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	4 cut(s)	321, 519, 575, 687
SatI	GCNGC	3 cut(s)	440, 567, 705
Sau3AI	GATC	5 cut(s)	297, 691, 840, 934, 955
Sau96I	GGNCC	2 cut(s)	506, 706
ScrFI	CCNGG	2 cut(s)	41, 1028
SduI	GDGCHC	2 cut(s)	8, 813
SfaNI	GCATC	6 cut(s)	177, 323, 324, 588, 982, 1011
SmiMI	CAYNNNNRTG	2 cut(s)	979, 990
SmlI	CTYRAG	2 cut(s)	433, 996
SmoI	CTYRAG	2 cut(s)	433, 996
Sse9I	AATT	4 cut(s)	454, 614, 759, 913
SsiI	CCGC	1 cut(s)	704
SspMI	CTAG	3 cut(s)	173, 420, 497
StyD4I	CCNGG	2 cut(s)	39, 1026
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	4 cut(s)	102, 753, 781, 853
TaiI	ACGT	4 cut(s)	109, 131, 964, 990
TaqI	TCGA	2 cut(s)	372, 1005
TasI	AATT	4 cut(s)	454, 614, 759, 913
TatI	WGTACW	2 cut(s)	231, 393
TauI	GCSGC	1 cut(s)	707
TfiI	GAWTC	2 cut(s)	35, 475
Tru1I	TTAA	4 cut(s)	321, 519, 575, 687
Tru9I	TTAA	4 cut(s)	321, 519, 575, 687
TscAI	CASTG	4 cut(s)	216, 295, 562, 658
TseFI	GTSAC	2 cut(s)	102, 983
TseI	GCWGC	2 cut(s)	439, 566
Tsp45I	GTSAC	2 cut(s)	102, 983
TspDTI	ATGAA	2 cut(s)	181, 607
TspRI	CASTG	4 cut(s)	216, 295, 562, 658
Tth111I	GACNNNGTC	1 cut(s)	1010
VneI	GTGCAC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	454, 614
XceI	RCATGY	1 cut(s)	971
XmaJI	CCTAGG	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	3 cut(s)	173, 420, 497
ZraI	GACGTC	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.