Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

15572087 .. 15573647

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATATGGATATACTATGCATTCCTCAAGTCTCATGTGATCCTTCTCATCACCATCAACTCATTCGGTTGTGTCATAGAGACCATTTATATTGCAATTTACCTTACATATGCAACTAAGCAAGCGAGGGTGTCTACTCTCAGGCTGCTTTTACTGGTGAACTTCGGGGGATTTTGCTTGATTCTTCTTCTGTCTCGCTTCTTGTCACAAGGGCCGACCCGCGTCGAAGTTCTCGGATGGGTTTGTGTGACTTTCTCTGTCGGTGTCTTTGCAGCACCTTTAAGCGTCATGAGAATGGTTATCCGCACCAAGAGCGTGGAGTTCATGCCGTTTAATTTATCCTTCTTCCTCACCCTAAGTGCCGTTATGTGGCTCTGTTATGGCTTACTCCTCAAGGATCTCTATGTTGCAACCCCAAACATAATTGGTTTCTCCTTTGGGGTGGTTCAGATGGCCCTCTATACAAAGTACAGGAACACCAAAACCATTGTGGAGGAAAAGCTACCAGAACACAAGGCTGATGTTGTAAAGCAAATCACAATTTTAACTACTACTCCTGAGGTGGAGGTACAAGTCCAAGCACCTGTAACCTCGGATGCCAATGGTACTGATGCTCATCAAAACTCTGAGCTTAACACTGACCAACATGTGCATGCACAAACATGCCGTAACGAGAAGATCATCGAACCATCCATGCCAGGCCAACTAGTTACATGTGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

242

Amino Acids

27.08

Weight (kDa)

7.62

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	222
AciI	CCGC	2 cut(s)	220, 304
AclWI	GGATC	2 cut(s)	34, 405
AfaI	GTAC	3 cut(s)	470, 570, 607
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	2 cut(s)	646, 713
AhlI	ACTAGT	1 cut(s)	706
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	2 cut(s)	502, 631
AluI	AGCT	2 cut(s)	502, 631
Alw26I	GTCTC	3 cut(s)	36, 74, 198
AlwI	GGATC	2 cut(s)	34, 405
AoxI	GGCC	3 cut(s)	212, 453, 700
ApeKI	GCWGC	2 cut(s)	145, 272
AspS9I	GGNCC	2 cut(s)	212, 454
AsuHPI	GGTGA	3 cut(s)	43, 169, 343
AxyI	CCTNAGG	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	132, 284
BccI	CCATC	4 cut(s)	62, 231, 445, 697
BceAI	ACGGC	3 cut(s)	313, 347, 651
BciT130I	CCWGG	1 cut(s)	699
BcoDI	GTCTC	3 cut(s)	36, 74, 198
BcuI	ACTAGT	1 cut(s)	706
BfaI	CTAG	1 cut(s)	707
BisI	GCNGC	2 cut(s)	146, 273
BlsI	GCNGC	2 cut(s)	147, 274
Bme1390I	CCNGG	1 cut(s)	699
BmgT120I	GGNCC	2 cut(s)	212, 454
BmrFI	CCNGG	1 cut(s)	699
BmsI	GCATC	2 cut(s)	586, 601
BoxI	GACNNNNGTC	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	11, 377
BsaBI	GATNNNNATC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	591
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	159
Bse21I	CCTNAGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	1 cut(s)	591
BseGI	GGATG	3 cut(s)	242, 601, 689
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	154, 549, 618
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	132, 284
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	214, 455, 702
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	3 cut(s)	36, 74, 198
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	3 cut(s)	214, 455, 702
Bso31I	GGTCTC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	39, 397, 678
BspACI	CCGC	2 cut(s)	220, 304
BspANI	GGCC	3 cut(s)	214, 455, 702
BspCNI	CTCAG	3 cut(s)	153, 550, 619
BspFNI	CGCG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	288
BspPI	GGATC	2 cut(s)	34, 405
BspTNI	GGTCTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	591
BssMI	GATC	3 cut(s)	39, 397, 678
Bst2UI	CCWGG	1 cut(s)	699
BstC8I	GCNNGC	2 cut(s)	123, 654
BstDEI	CTNAG	5 cut(s)	117, 140, 356, 558, 627
BstF5I	GGATG	3 cut(s)	242, 601, 689
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	42, 400, 681
BstMAI	GTCTC	3 cut(s)	36, 74, 198
BstMBI	GATC	3 cut(s)	39, 397, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	312
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	4 cut(s)	650, 656, 666, 717
BstPAI	GACNNNNGTC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	697
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	132, 284
BstX2I	RGATCY	1 cut(s)	397
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	558
BsuRI	GGCC	3 cut(s)	214, 455, 702
BtsCI	GGATG	3 cut(s)	242, 601, 689
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	2 cut(s)	123, 654
CciI	TCATGA	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	212, 454
CseI	GACGC	2 cut(s)	211, 274
Csp6I	GTAC	3 cut(s)	469, 569, 606
CviAII	CATG	8 cut(s)	35, 289, 325, 647, 653, 663, 694, 714
CviJI	RGCY	9 cut(s)	145, 214, 373, 384, 455, 502, 518, 631, 702
CviKI_1	RGCY	9 cut(s)	145, 214, 373, 384, 455, 502, 518, 631, 702
CviQI	GTAC	3 cut(s)	469, 569, 606
DdeI	CTNAG	5 cut(s)	117, 140, 356, 558, 627
DpnI	GATC	3 cut(s)	41, 399, 680
DpnII	GATC	3 cut(s)	39, 397, 678
Eco31I	GGTCTC	1 cut(s)	74
Eco81I	CCTNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	22
FaeI	CATG	8 cut(s)	38, 292, 328, 650, 656, 666, 697, 717
FatI	CATG	8 cut(s)	34, 288, 324, 646, 652, 662, 693, 713
FauI	CCCGC	1 cut(s)	227
FauNDI	CATATG	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	146, 273
FokI	GGATG	3 cut(s)	249, 608, 676
Fsp4HI	GCNGC	2 cut(s)	146, 273
FspBI	CTAG	1 cut(s)	707
GluI	GCNGC	2 cut(s)	146, 273
HaeIII	GGCC	3 cut(s)	214, 455, 702
HgaI	GACGC	2 cut(s)	211, 274
Hin1II	CATG	8 cut(s)	38, 292, 328, 650, 656, 666, 697, 717
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	3 cut(s)	43, 169, 343
Hpy166II	GTNNAC	2 cut(s)	135, 160
Hpy188I	TCNGA	4 cut(s)	236, 450, 595, 628
Hpy188III	TCNNGA	2 cut(s)	289, 557
Hpy8I	GTNNAC	2 cut(s)	135, 160
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	53, 352
HpyCH4V	TGCA	7 cut(s)	20, 95, 113, 272, 410, 652, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	312
HpyF3I	CTNAG	5 cut(s)	117, 140, 356, 558, 627
Hsp92II	CATG	8 cut(s)	38, 292, 328, 650, 656, 666, 697, 717
Kzo9I	GATC	3 cut(s)	39, 397, 678
LpnPI	CCDG	8 cut(s)	127, 140, 457, 519, 570, 597, 684, 711
Lsp1109I	GCAGC	2 cut(s)	132, 284
LweI	GCATC	2 cut(s)	586, 601
MaeI	CTAG	1 cut(s)	707
MaeIII	GTNAC	5 cut(s)	204, 247, 586, 668, 709
MalI	GATC	3 cut(s)	41, 399, 680
MboI	GATC	3 cut(s)	39, 397, 678
MboII	GAAGA	4 cut(s)	176, 179, 337, 688
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	4 cut(s)	96, 334, 423, 540
MnlI	CCTC	9 cut(s)	35, 120, 359, 401, 467, 487, 553, 559, 601
Mph1103I	ATGCAT	1 cut(s)	22
MseI	TTAA	4 cut(s)	281, 333, 545, 633
MslI	CAYNNNNRTG	3 cut(s)	293, 651, 661
MspR9I	CCNGG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	699
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	312
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	3 cut(s)	39, 397, 678
NlaIII	CATG	8 cut(s)	38, 292, 328, 650, 656, 666, 697, 717
NmuCI	GTSAC	2 cut(s)	204, 247
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	4 cut(s)	650, 656, 666, 717
PaeI	GCATGC	1 cut(s)	656
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	2 cut(s)	646, 713
PctI	GAATGC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	147, 274
PscI	ACATGT	2 cut(s)	646, 713
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspPI	GGNCC	2 cut(s)	212, 454
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	3 cut(s)	470, 570, 607
RsaNI	GTAC	3 cut(s)	469, 569, 606
RseI	CAYNNNNRTG	3 cut(s)	293, 651, 661
SaqAI	TTAA	4 cut(s)	281, 333, 545, 633
SatI	GCNGC	2 cut(s)	146, 273
Sau3AI	GATC	3 cut(s)	39, 397, 678
Sau96I	GGNCC	2 cut(s)	212, 454
ScrFI	CCNGG	1 cut(s)	699
SetI	ASST	8 cut(s)	105, 280, 504, 564, 570, 586, 593, 633
SfaNI	GCATC	2 cut(s)	586, 601
SmiMI	CAYNNNNRTG	3 cut(s)	293, 651, 661
SmlI	CTYRAG	2 cut(s)	26, 392
SmoI	CTYRAG	2 cut(s)	26, 392
SpeI	ACTAGT	1 cut(s)	706
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	4 cut(s)	96, 334, 423, 540
SsiI	CCGC	2 cut(s)	220, 304
SspMI	CTAG	1 cut(s)	707
StyD4I	CCNGG	1 cut(s)	697
TaqI	TCGA	2 cut(s)	225, 684
TasI	AATT	4 cut(s)	96, 334, 423, 540
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	281, 333, 545, 633
Tru9I	TTAA	4 cut(s)	281, 333, 545, 633
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	204, 247
TseI	GCWGC	2 cut(s)	145, 272
Tsp45I	GTSAC	2 cut(s)	204, 247
TspDTI	ATGAA	1 cut(s)	313
TspRI	CASTG	1 cut(s)	643
XceI	RCATGY	4 cut(s)	650, 656, 666, 717
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmiI	GTMKAC	1 cut(s)	134
XspI	CTAG	1 cut(s)	707
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.