Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

15596703 .. 15598015

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTCAATTTAAACAGGCAACATTGTCTCATTCATCGTTTTTCTAGCTCCGCTCTCAAGTCTCATGAGATCCTTCTCATCACCATCAACTCATTCGGTTGTGTCATAGAGACCATTTATATTGCAATTTACCTTACATATGCAACTAAGCAAGCGAGGGTGTCTACTCTCAGGCTGCTTTTACTGGTGAACTTCGGGGGATTTTGCTTGATTCTTCTTCTGTCTCGCTTCTTGTCACAAGGGCCGACCCGCGTCGAAGTTCTCGGATGGGTTTGTGTGACTTTCTCTGTCGGTGTCTTTGCAGCACCTTTAAGCGTCATGAGAATGGTTATCCGCACCAAGAGCGTGGAGTTCATGCCGTTTAATTTATCCTTCTTCCTCACCCTAAGTGCCGTTATGTGGCTCTGTTATGGCTTACTCCTCAAGGATCTCTATGTTGCAGTAAGTCATTTTATTTGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

155

Amino Acids

17.45

Weight (kDa)

9.38

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	164
AccII	CGCG	1 cut(s)	252
AciI	CCGC	3 cut(s)	51, 250, 334
AclWI	GGATC	2 cut(s)	64, 435
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	7
AluBI	AGCT	1 cut(s)	48
AluI	AGCT	1 cut(s)	48
Alw26I	GTCTC	4 cut(s)	32, 66, 104, 228
AlwI	GGATC	2 cut(s)	64, 435
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	2 cut(s)	175, 302
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	3 cut(s)	73, 199, 373
BbvI	GCAGC	2 cut(s)	162, 314
BccI	CCATC	2 cut(s)	92, 261
BceAI	ACGGC	2 cut(s)	343, 377
BcoDI	GTCTC	4 cut(s)	32, 66, 104, 228
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	176, 303
BlsI	GCNGC	2 cut(s)	177, 304
BmgT120I	GGNCC	1 cut(s)	242
BoxI	GACNNNNGTC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	41, 407
BsaI	GGTCTC	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	162, 314
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	4 cut(s)	32, 66, 104, 228
BsnI	GGCC	1 cut(s)	244
Bso31I	GGTCTC	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	69, 427
BspACI	CCGC	3 cut(s)	51, 250, 334
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	252
BspHI	TCATGA	2 cut(s)	64, 318
BspPI	GGATC	2 cut(s)	64, 435
BspTNI	GGTCTC	1 cut(s)	104
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	69, 427
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	147, 170, 386
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	72, 430
BstMAI	GTCTC	4 cut(s)	32, 66, 104, 228
BstMBI	GATC	2 cut(s)	69, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstPAI	GACNNNNGTC	1 cut(s)	251
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	2 cut(s)	162, 314
BstX2I	RGATCY	2 cut(s)	69, 427
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	2 cut(s)	69, 427
BsuRI	GGCC	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	153
CciI	TCATGA	2 cut(s)	64, 318
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	2 cut(s)	241, 304
CviAII	CATG	3 cut(s)	65, 319, 355
CviJI	RGCY	5 cut(s)	48, 175, 244, 403, 414
CviKI_1	RGCY	5 cut(s)	48, 175, 244, 403, 414
DdeI	CTNAG	3 cut(s)	147, 170, 386
DpnI	GATC	2 cut(s)	71, 429
DpnII	GATC	2 cut(s)	69, 427
DraI	TTTAAA	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	68, 322, 358
FatI	CATG	3 cut(s)	64, 318, 354
FauI	CCCGC	1 cut(s)	257
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	176, 303
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	176, 303
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	2 cut(s)	176, 303
HaeIII	GGCC	1 cut(s)	244
HgaI	GACGC	2 cut(s)	241, 304
Hin1II	CATG	3 cut(s)	68, 322, 358
HinfI	GANTC	1 cut(s)	211
HphI	GGTGA	3 cut(s)	73, 199, 373
Hpy166II	GTNNAC	2 cut(s)	165, 190
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	2 cut(s)	65, 319
Hpy8I	GTNNAC	2 cut(s)	165, 190
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	83, 382
HpyCH4V	TGCA	4 cut(s)	125, 143, 302, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	3 cut(s)	147, 170, 386
Hsp92II	CATG	3 cut(s)	68, 322, 358
Kzo9I	GATC	2 cut(s)	69, 427
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	2 cut(s)	157, 170
Lsp1109I	GCAGC	2 cut(s)	162, 314
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	234, 277
MalI	GATC	2 cut(s)	71, 429
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	69, 427
MboII	GAAGA	3 cut(s)	206, 209, 367
MflI	RGATCY	2 cut(s)	69, 427
MluCI	AATT	3 cut(s)	7, 126, 364
MnlI	CCTC	3 cut(s)	150, 389, 431
MseI	TTAA	3 cut(s)	11, 311, 363
MslI	CAYNNNNRTG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	2 cut(s)	69, 427
NlaIII	CATG	3 cut(s)	68, 322, 358
NmuCI	GTSAC	2 cut(s)	234, 277
PagI	TCATGA	2 cut(s)	64, 318
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	177, 304
PshAI	GACNNNNGTC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	69, 427
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	11, 311, 363
SatI	GCNGC	2 cut(s)	176, 303
Sau3AI	GATC	2 cut(s)	69, 427
Sau96I	GGNCC	1 cut(s)	242
SetI	ASST	3 cut(s)	50, 135, 310
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	2 cut(s)	56, 422
SmoI	CTYRAG	2 cut(s)	56, 422
Sse9I	AATT	3 cut(s)	7, 126, 364
SsiI	CCGC	3 cut(s)	51, 250, 334
SspMI	CTAG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	255
TasI	AATT	3 cut(s)	7, 126, 364
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	11, 311, 363
Tru9I	TTAA	3 cut(s)	11, 311, 363
TseFI	GTSAC	2 cut(s)	234, 277
TseI	GCWGC	2 cut(s)	175, 302
Tsp45I	GTSAC	2 cut(s)	234, 277
TspDTI	ATGAA	2 cut(s)	23, 343
XmiI	GTMKAC	1 cut(s)	164
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.