Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014431

Physical Location & Seq

Genomic Coordinates Forward (+)

13449100 .. 13451508

Gene Structure 2409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G146400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACTTCATCAAGTGCTCACAGTCCTTTGGTTATTGCCTTTGGCATTCTAGGTAACGTTGTCTCGTTCGTGGTTTTTCTAGCTCCAGCGCCGACGTTTTGGAGGATATTTAAGAAGAAATCAACAGAAGGGTTTCAATCAGTTCCATATGTGTTTGCACTATTCAGTGCAATGATTTGGATATACTATGCATTTCTCAAGTCTGATGAGTTCCTTCTCATCACCATCAATGCCTTTGGTTGTATCATTGAGACCATTTACATCTCAATGTACATTACTTATGCACCTAAGCAAGCTAGGGTGTTTGCTTTGAGGCTGCTTCTTCTGGTGAATTTTGGTGGGTTTTGCTTGATTCTTCTTCTGTCTCACTTCTTGGCACAAGGGCCCACCCGCGTTGAAGTTCTTGGATGGGTTTGTGTAGCTTTCTCTGTCAGTGTCTTTGCAGCACCTCTAAGCATCATGAGGGTGGTTATCCGAACCAAGAGCGTCGAGTTCATGCCTTTTTCTTTATCCTTCTTCCTCACCCTCAGTGCTGTTATGTGGCTCTTCTATGGTTTGCTCCTCAAGGATCTCTACGTTGCGTGCCCAAACATACTTGGATTCACCTTCGGTGTGGCTCAGATGATACTCTACGCAATCTACAGGAACAAGAAGACAGTTCTTGTGGAGGACCAGAAGCTCCCAGAGCACAAGGGTGATGTTGTGAAGCAGATCCAAATTTTGAGTACAACTCCTGAGGTGGAGATACAAGTACAAGCAGTAGCTGTAAGCTCCCATGTCAATACTGAGAATGAAAATTGTGAGCAAACAAAGGATCAATATGTGCATCCTCAAACATGTAACACTGAGAAAATCCTCGGACCCTCTATGCCAAGCCAAATGGTTACATGCGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0007275 GO:0008150 GO:0008515 GO:0008643 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010431 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0016043 GO:0021700 GO:0022414 GO:0022607 GO:0022857 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0034219 GO:0043933 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0055085 GO:0061458 GO:0065003 GO:0071695 GO:0071702 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

300

Amino Acids

33.55

Weight (kDa)

8.11

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48740 AT5G23660
fragaria_vesca	FvH4_5g08970
malus_domestica	MD06G1136500.v1.1 MD14G1151300.v1.1
prunus_persica	Prupe.5G146400_v2.0.a1
pyrus_communis	pycom14g12600 pycom14g12610
rosa_chinensis	RchiOBHm_Chr7g0189331
rosa_laevigata	RLG00000004618
rosa_multiflora	Rmu_sc0001282.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265530
rosa_rugosa	Rorug06G0497200
rosa_samantha	Rh7AG102200 Rh7BG104800 Rh7DG103800
rosa_wichuraiana	Rw7G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	1 cut(s)	391
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	3 cut(s)	576, 706, 822
AcsI	RAATTY	2 cut(s)	331, 717
AfaI	GTAC	3 cut(s)	272, 727, 753
AflIII	ACRYGT	1 cut(s)	836
AgsI	TTSAA	2 cut(s)	137, 398
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	6 cut(s)	83, 296, 422, 679, 764, 771
AluI	AGCT	6 cut(s)	83, 296, 422, 679, 764, 771
Alw21I	GWGCWC	2 cut(s)	19, 690
Alw26I	GTCTC	3 cut(s)	67, 245, 369
AlwI	GGATC	3 cut(s)	576, 706, 822
AlwNI	CAGNNNCTG	1 cut(s)	764
AoxI	GGCC	1 cut(s)	383
ApaI	GGGCCC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	316, 443
ApoI	RAATTY	2 cut(s)	331, 717
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	4 cut(s)	383, 384, 670, 860
AsuHPI	GGTGA	5 cut(s)	214, 340, 514, 595, 707
AvaII	GGWCC	2 cut(s)	670, 860
AxyI	CCTNAGG	1 cut(s)	735
BaeGI	GKGCMC	2 cut(s)	387, 587
BanII	GRGCYC	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	2 cut(s)	19, 690
BbvI	GCAGC	2 cut(s)	303, 455
BccI	CCATC	2 cut(s)	233, 402
BcoDI	GTCTC	3 cut(s)	67, 245, 369
BfaI	CTAG	3 cut(s)	50, 80, 297
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	2 cut(s)	317, 444
BlsI	GCNGC	2 cut(s)	318, 445
Bme18I	GGWCC	2 cut(s)	670, 860
BmgT120I	GGNCC	4 cut(s)	383, 384, 670, 860
BmiI	GGNNCC	2 cut(s)	385, 862
BmsI	GCATC	2 cut(s)	465, 835
BpiI	GAAGAC	1 cut(s)	659
BplI	GAGNNNNNCTC	2 cut(s)	715, 747
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	182, 548
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	856
Bse21I	CCTNAGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	856
BseGI	GGATG	2 cut(s)	413, 826
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	5 cut(s)	541, 632, 726, 777, 837
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	2 cut(s)	387, 587
BseXI	GCAGC	2 cut(s)	303, 455
Bsh1236I	CGCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	19, 690
BsmAI	GTCTC	3 cut(s)	67, 245, 369
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	245
Bsp120I	GGGCCC	1 cut(s)	383
Bsp1286I	GDGCHC	4 cut(s)	19, 387, 587, 690
Bsp1407I	TGTACA	1 cut(s)	270
Bsp143I	GATC	3 cut(s)	568, 711, 814
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	1 cut(s)	385
BspCNI	CTCAG	5 cut(s)	540, 631, 727, 778, 838
BspFNI	CGCG	1 cut(s)	393
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	385, 862
BspPI	GGATC	3 cut(s)	576, 706, 822
BspQI	GCTCTTC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	856
BssMI	GATC	3 cut(s)	568, 711, 814
Bst4CI	ACNGT	2 cut(s)	23, 658
Bst6I	CTCTTC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	270
BstC8I	GCNNGC	2 cut(s)	294, 583
BstDEI	CTNAG	7 cut(s)	288, 452, 527, 618, 735, 786, 846
BstF5I	GGATG	2 cut(s)	413, 826
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	571, 714, 817
BstMAI	GTCTC	3 cut(s)	67, 245, 369
BstMBI	GATC	3 cut(s)	568, 711, 814
BstMWI	GCNNNNNNNGC	1 cut(s)	685
BstNSI	RCATGY	2 cut(s)	840, 891
BstSFI	CTRYAG	1 cut(s)	640
BstSLI	GKGCMC	2 cut(s)	387, 587
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	303, 455
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	2 cut(s)	568, 711
BstYI	RGATCY	2 cut(s)	568, 711
Bsu36I	CCTNAGG	1 cut(s)	735
BsuRI	GGCC	1 cut(s)	385
BtsCI	GGATG	2 cut(s)	413, 826
BtsIMutI	CAGTG	4 cut(s)	172, 439, 535, 843
Cac8I	GCNNGC	2 cut(s)	294, 583
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	383, 384, 670, 860
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	271, 726, 752
CspCI	CAANNNNNGTGG	2 cut(s)	376, 411
CviAII	CATG	5 cut(s)	460, 496, 776, 837, 888
CviQI	GTAC	3 cut(s)	271, 726, 752
DdeI	CTNAG	7 cut(s)	288, 452, 527, 618, 735, 786, 846
DpnI	GATC	3 cut(s)	570, 713, 816
DpnII	GATC	3 cut(s)	568, 711, 814
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	670, 860
Eco81I	CCTNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	383
EcoT22I	ATGCAT	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	387
FaeI	CATG	5 cut(s)	463, 499, 779, 840, 891
FatI	CATG	5 cut(s)	459, 495, 775, 836, 887
FauI	CCCGC	1 cut(s)	398
FauNDI	CATATG	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	317, 444
FokI	GGATG	2 cut(s)	420, 813
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	317, 444
FspBI	CTAG	3 cut(s)	50, 80, 297
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	2 cut(s)	317, 444
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	385
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	463, 499, 779, 840, 891
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	352, 600
HphI	GGTGA	5 cut(s)	214, 340, 514, 595, 707
Hpy188I	TCNGA	4 cut(s)	205, 476, 621, 860
Hpy188III	TCNNGA	2 cut(s)	460, 734
Hpy99I	CGWCG	2 cut(s)	97, 491
HpyAV	CCTTC	4 cut(s)	122, 224, 523, 616
HpyCH4III	ACNGT	2 cut(s)	23, 658
HpyCH4IV	ACGT	3 cut(s)	57, 95, 576
HpyCH4V	TGCA	6 cut(s)	158, 170, 191, 284, 443, 826
HpyF10VI	GCNNNNNNNGC	1 cut(s)	685
HpyF3I	CTNAG	7 cut(s)	288, 452, 527, 618, 735, 786, 846
HpySE526I	ACGT	3 cut(s)	57, 95, 576
Hsp92II	CATG	5 cut(s)	463, 499, 779, 840, 891
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	568, 711, 814
LguI	GCTCTTC	1 cut(s)	551
LmnI	GCTCC	4 cut(s)	88, 564, 684, 776
LpnPI	CCDG	6 cut(s)	99, 311, 628, 686, 696, 747
Lsp1109I	GCAGC	2 cut(s)	303, 455
LweI	GCATC	2 cut(s)	465, 835
MaeI	CTAG	3 cut(s)	50, 80, 297
MaeII	ACGT	3 cut(s)	57, 95, 576
MaeIII	GTNAC	3 cut(s)	53, 839, 883
MalI	GATC	3 cut(s)	570, 713, 816
MboI	GATC	3 cut(s)	568, 711, 814
MboII	GAAGA	7 cut(s)	127, 314, 347, 350, 508, 538, 664
MflI	RGATCY	2 cut(s)	568, 711
MhlI	GDGCHC	4 cut(s)	19, 387, 587, 690
MluCI	AATT	3 cut(s)	331, 717, 796
Mph1103I	ATGCAT	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	3 cut(s)	266, 464, 693
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	685
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	3 cut(s)	568, 711, 814
NlaIII	CATG	5 cut(s)	463, 499, 779, 840, 891
NlaIV	GGNNCC	2 cut(s)	385, 862
NsiI	ATGCAT	1 cut(s)	193
NspI	RCATGY	2 cut(s)	840, 891
OliI	CACNNNNGTG	1 cut(s)	693
PagI	TCATGA	1 cut(s)	459
PciI	ACATGT	1 cut(s)	836
PciSI	GCTCTTC	1 cut(s)	551
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	352, 600
PkrI	GCNGC	2 cut(s)	318, 445
PscI	ACATGT	1 cut(s)	836
Psp1406I	AACGTT	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	385, 862
PspOMI	GGGCCC	1 cut(s)	383
PspPI	GGNCC	4 cut(s)	383, 384, 670, 860
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	2 cut(s)	568, 711
RsaI	GTAC	3 cut(s)	272, 727, 753
RsaNI	GTAC	3 cut(s)	271, 726, 752
RseI	CAYNNNNRTG	3 cut(s)	266, 464, 693
SapI	GCTCTTC	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	317, 444
Sau3AI	GATC	3 cut(s)	568, 711, 814
Sau96I	GGNCC	4 cut(s)	383, 384, 670, 860
SduI	GDGCHC	4 cut(s)	19, 387, 587, 690
SfaNI	GCATC	2 cut(s)	465, 835
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	2 cut(s)	670, 860
SmiMI	CAYNNNNRTG	3 cut(s)	266, 464, 693
SmlI	CTYRAG	2 cut(s)	197, 563
SmoI	CTYRAG	2 cut(s)	197, 563
Sse9I	AATT	3 cut(s)	331, 717, 796
SsiI	CCGC	1 cut(s)	391
SspMI	CTAG	3 cut(s)	50, 80, 297
TaaI	ACNGT	2 cut(s)	23, 658
TaiI	ACGT	3 cut(s)	60, 98, 579
TaqI	TCGA	1 cut(s)	489
TasI	AATT	3 cut(s)	331, 717, 796
TatI	WGTACW	3 cut(s)	270, 725, 751
TfiI	GAWTC	2 cut(s)	352, 600
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	172, 439, 535, 850
TseI	GCWGC	2 cut(s)	316, 443
TspDTI	ATGAA	2 cut(s)	484, 807
TspRI	CASTG	4 cut(s)	172, 439, 535, 850
VpaK11BI	GGWCC	2 cut(s)	670, 860
XapI	RAATTY	2 cut(s)	331, 717
XceI	RCATGY	2 cut(s)	840, 891
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	3 cut(s)	50, 80, 297
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.