Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014214

Physical Location & Seq

Genomic Coordinates Reverse (-)

18255960 .. 18260998

Gene Structure 5039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTATCCGACTGGTCAACAGATTTCGTTTCAGACCACTCCGTTGAATGTTCAAGATCCAACAAGGATGATGAATTTGGATCAATCTTCACCAGTTGCAAGAAATGAAACTCAGAATGGAGGAGGCATTGCTCACGCTGAGTTTGCTATGTTCAATTCCAAGAGGCTTGAATCTGATCTTGAAGCTATGGGTAACAAAATCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCTCAGAAAAACAAAATGGATGAAGCTATCGTCGACTTGCAAGTTCATATGAGTAAGCTTAACTCGTCTCCTACTCCTAGAAGTGAAAACTCTGATAACAGTCTTCAGGGTGAAGATATCAATGCACAGATCCTTCGCCACGAAAACTCAGCTGCTGGAGTTTTAAGTCTGGTTGAGACTCTTCATGGTGCTCAAGCTTCTCAGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATGAAAATCTCAGCCAGATTTTGTCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTATGCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCATGGCAACATTGATATAAATGCTGGCCTTCATTGCCTTGGCTCTTCGATTGGAAGAGAGATTGGAGACAGTTTTGATGCCATCTGCCTTGAAAACCTGAGGCCGTATGTTGGTCAGCACATAGCTGATGATCTGCAAAGAAGGCTTGATCTTCTGAAACCAAAATTACCTAATGGTGAGTGTCCTCCCGGGTTTCTCGGATTTGCAGTGAATATGATACAGATCGATCCAGCTTACTTGCTCTGTGTCACATCATATGGATATGGTCTTCGTGAGACCTTGTTCTACAATCTATTCTCTCGCCTTCAAGTTTACAAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCGGTATCTTTGGATGGAGGAATCATCAGGAAAACGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAACGTGAGATTTGCAAAGCCAACTGCTTCTCGCACGATGGACAACTATAGTGAGGCGGAGAAGAAAATGAAAGAGCTGAAATGGAAAAAGGAGAAAACGCTGGAGGACATTAAGCGGGAGCAAGTGCTCCGTGAGCATGCCGTCTTCAACTTTGGCAAGAAGAAAGAAGAATTTGTTCGATGCTTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000419 GO:0000428 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0010964 GO:0016070 GO:0016458 GO:0019219 GO:0019222 GO:0030880 GO:0031047 GO:0031323 GO:0031326 GO:0031935 GO:0032259 GO:0032991 GO:0033043 GO:0033044 GO:0034641 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0046483 GO:0046983 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070920 GO:0070921 GO:0071704 GO:0080090 GO:0080188 GO:0090304 GO:1901360 GO:1902275 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

46.77

Weight (kDa)

6.77

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014214)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49250
fragaria_vesca	FvH4_7g31551
malus_domestica	MD01G1218300.v1.1 MD07G1288200.v1.1
prunus_persica	Prupe.2G309700_v2.0.a1
pyrus_communis	pycom01g22830 pycom07g26100
rosa_chinensis	RchiOBHm_Chr1g0380541
rosa_laevigata	RLG00000026286
rosa_multiflora	Rmu_co8407499.1_g000001 Rmu_ssc0000015.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279210
rosa_rugosa	Rorug01G0422400
rosa_samantha	Rh1AG446900 Rh1BG402200 Rh1CG416400 Rh1DG432400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	3 cut(s)	965, 1088, 1147
AclWI	GGATC	5 cut(s)	50, 87, 358, 821, 1010
AcsI	RAATTY	2 cut(s)	73, 1202
AcuI	CTGAAG	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	710, 1027
AgsI	TTSAA	9 cut(s)	46, 53, 154, 170, 182, 692, 908, 1009, 1180
AluBI	AGCT	8 cut(s)	185, 260, 292, 386, 431, 725, 833, 1108
AluI	AGCT	8 cut(s)	185, 260, 292, 386, 431, 725, 833, 1108
Alw21I	GWGCWC	2 cut(s)	427, 1161
Alw26I	GTCTC	5 cut(s)	240, 306, 404, 660, 869
AlwI	GGATC	5 cut(s)	50, 87, 358, 821, 1010
AlwNI	CAGNNNCTG	1 cut(s)	389
Ama87I	CYCGRG	1 cut(s)	788
AoxI	GGCC	3 cut(s)	625, 701, 924
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	73, 1202
Asp700I	GAANNNNTTC	1 cut(s)	1206
AspS9I	GGNCC	1 cut(s)	924
AsuC2I	CCSGG	2 cut(s)	789, 790
AsuHPI	GGTGA	4 cut(s)	81, 356, 788, 1042
AvaI	CYCGRG	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	943
BbsI	GAAGAC	3 cut(s)	329, 860, 1168
Bbv12I	GWGCWC	2 cut(s)	427, 1161
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	4 cut(s)	689, 953, 971, 1063
BceAI	ACGGC	3 cut(s)	594, 688, 1157
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	2 cut(s)	789, 790
BcoDI	GTCTC	5 cut(s)	240, 306, 404, 660, 869
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	1078
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	789, 790
BmeT110I	CYCGRG	1 cut(s)	788
BmgT120I	GGNCC	1 cut(s)	924
BmrFI	CCNGG	2 cut(s)	789, 790
BmsI	GCATC	2 cut(s)	667, 1202
BpiI	GAAGAC	3 cut(s)	329, 860, 1168
BpmI	CTGGAG	2 cut(s)	411, 1154
BpuEI	CTTGAG	3 cut(s)	206, 215, 411
BpuMI	CCSGG	2 cut(s)	789, 790
Bsa29I	ATCGAT	1 cut(s)	825
BsaBI	GATNNNNATC	2 cut(s)	498, 821
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	3 cut(s)	601, 637, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 1027
Bse1I	ACTGG	2 cut(s)	16, 92
Bse21I	CCTNAGG	1 cut(s)	698
Bse3DI	GCAATG	2 cut(s)	126, 631
Bse8I	GATNNNNATC	2 cut(s)	498, 821
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	3 cut(s)	601, 637, 788
BseGI	GGATG	3 cut(s)	72, 259, 982
BseJI	GATNNNNATC	2 cut(s)	498, 821
BseLI	CCNNNNNNNGG	2 cut(s)	710, 1027
BseMI	GCAATG	2 cut(s)	126, 631
BseMII	CTCAG	8 cut(s)	125, 129, 251, 396, 449, 517, 689, 1235
BseNI	ACTGG	2 cut(s)	16, 92
BseRI	GAGGAG	1 cut(s)	135
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	3 cut(s)	627, 703, 926
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	427, 1161
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	1 cut(s)	789
BslFI	GGGAC	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	710, 1027
BsmAI	GTCTC	5 cut(s)	240, 306, 404, 660, 869
BsmBI	CGTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	627, 703, 926
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	3 cut(s)	427, 943, 1161
Bsp143I	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	3 cut(s)	965, 1088, 1147
BspANI	GGCC	3 cut(s)	627, 703, 926
BspCNI	CTCAG	8 cut(s)	124, 130, 250, 395, 448, 516, 690, 1234
BspDI	ATCGAT	1 cut(s)	825
BspPI	GGATC	5 cut(s)	50, 87, 358, 821, 1010
BspQI	GCTCTTC	1 cut(s)	649
BspTNI	GGTCTC	1 cut(s)	869
BsrDI	GCAATG	2 cut(s)	126, 631
BsrI	ACTGG	2 cut(s)	16, 92
BssECI	CCNNGG	3 cut(s)	601, 637, 788
BssMI	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
BssT1I	CCWWGG	2 cut(s)	601, 637
Bst4CI	ACNGT	3 cut(s)	335, 671, 1022
Bst6I	CTCTTC	3 cut(s)	420, 649, 649
BstC8I	GCNNGC	2 cut(s)	625, 1170
BstDEI	CTNAG	8 cut(s)	111, 138, 237, 382, 435, 503, 698, 1221
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	3 cut(s)	72, 259, 982
BstKTI	GATC	9 cut(s)	58, 82, 178, 366, 733, 751, 825, 829, 1005
BstMAI	GTCTC	5 cut(s)	240, 306, 404, 660, 869
BstMBI	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 587, 633, 742, 1165
BstNSI	RCATGY	1 cut(s)	1172
BstSCI	CCNGG	2 cut(s)	787, 788
BstSFI	CTRYAG	1 cut(s)	1078
BstSLI	GKGCMC	1 cut(s)	943
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	3 cut(s)	329, 860, 1168
BstX2I	RGATCY	3 cut(s)	55, 363, 1002
BstYI	RGATCY	3 cut(s)	55, 363, 1002
Bsu15I	ATCGAT	1 cut(s)	825
Bsu36I	CCTNAGG	1 cut(s)	698
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	627, 703, 926
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	601
BtsCI	GGATG	3 cut(s)	72, 259, 982
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	1 cut(s)	813
Cac8I	GCNNGC	2 cut(s)	625, 1170
CaiI	CAGNNNCTG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	924
Cfr9I	CCCGGG	1 cut(s)	788
ClaI	ATCGAT	1 cut(s)	825
CviAII	CATG	6 cut(s)	209, 419, 602, 948, 1169, 1230
DdeI	CTNAG	8 cut(s)	111, 138, 237, 382, 435, 503, 698, 1221
DpnI	GATC	9 cut(s)	57, 81, 177, 365, 732, 750, 824, 828, 1004
DpnII	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
Eam1104I	CTCTTC	3 cut(s)	420, 649, 649
EarI	CTCTTC	3 cut(s)	420, 649, 649
EciI	GGCGGA	1 cut(s)	1103
Eco130I	CCWWGG	2 cut(s)	601, 637
Eco31I	GGTCTC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	323
Eco81I	CCTNAGG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	788
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	601, 637
EcoT22I	ATGCAT	1 cut(s)	953
ErhI	CCWWGG	2 cut(s)	601, 637
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	6 cut(s)	212, 422, 605, 951, 1172, 1233
FaqI	GGGAC	1 cut(s)	544
FatI	CATG	6 cut(s)	208, 418, 601, 947, 1168, 1229
FauI	CCCGC	1 cut(s)	1140
FauNDI	CATATG	2 cut(s)	282, 856
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	3 cut(s)	79, 266, 989
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	2 cut(s)	411, 1154
HaeIII	GGCC	3 cut(s)	627, 703, 926
HapII	CCGG	1 cut(s)	789
Hin1II	CATG	6 cut(s)	212, 422, 605, 951, 1172, 1233
HincII	GTYRAC	3 cut(s)	17, 268, 447
HindII	GTYRAC	3 cut(s)	17, 268, 447
HindIII	AAGCTT	2 cut(s)	290, 429
HinfI	GANTC	4 cut(s)	170, 412, 532, 984
HpaII	CCGG	1 cut(s)	789
HphI	GGTGA	4 cut(s)	81, 356, 788, 1042
Hpy166II	GTNNAC	5 cut(s)	17, 268, 447, 913, 1033
Hpy188I	TCNGA	9 cut(s)	9, 33, 114, 175, 240, 328, 756, 800, 1224
Hpy188III	TCNNGA	4 cut(s)	53, 179, 872, 991
Hpy8I	GTNNAC	5 cut(s)	17, 268, 447, 913, 1033
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	5 cut(s)	377, 478, 638, 735, 914
HpyCH4III	ACNGT	3 cut(s)	335, 671, 1022
HpyCH4IV	ACGT	1 cut(s)	1035
HpyCH4V	TGCA	9 cut(s)	98, 274, 359, 558, 736, 806, 951, 1046, 1233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 587, 633, 742, 1165
HpyF3I	CTNAG	8 cut(s)	111, 138, 237, 382, 435, 503, 698, 1221
HpySE526I	ACGT	1 cut(s)	1035
Hsp92II	CATG	6 cut(s)	212, 422, 605, 951, 1172, 1233
Kzo9I	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
LguI	GCTCTTC	1 cut(s)	649
LmnI	GCTCC	2 cut(s)	1150, 1164
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	2 cut(s)	667, 1202
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	1035
MaeIII	GTNAC	3 cut(s)	191, 574, 847
MalI	GATC	9 cut(s)	57, 81, 177, 365, 732, 750, 824, 828, 1004
MboI	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
MflI	RGATCY	3 cut(s)	55, 363, 1002
MhlI	GDGCHC	3 cut(s)	427, 943, 1161
MluCI	AATT	6 cut(s)	73, 154, 520, 562, 764, 1202
MlyI	GAGTC	2 cut(s)	406, 526
MmeI	TCCRAC	2 cut(s)	32, 83
Mph1103I	ATGCAT	1 cut(s)	953
MroXI	GAANNNNTTC	1 cut(s)	1206
MseI	TTAA	3 cut(s)	294, 398, 1143
MslI	CAYNNNNRTG	1 cut(s)	1258
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	789
MspR9I	CCNGG	2 cut(s)	789, 790
MwoI	GCNNNNNNNGC	5 cut(s)	143, 587, 633, 742, 1165
NciI	CCSGG	2 cut(s)	789, 790
NcoI	CCATGG	1 cut(s)	601
NdeI	CATATG	2 cut(s)	282, 856
NdeII	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
NlaIII	CATG	6 cut(s)	212, 422, 605, 951, 1172, 1233
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	953
NspI	RCATGY	1 cut(s)	1172
PaeI	GCATGC	1 cut(s)	1172
PciSI	GCTCTTC	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	1206
PfeI	GAWTC	2 cut(s)	170, 984
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	406, 526
PpsI	GAGTC	2 cut(s)	406, 526
PspPI	GGNCC	1 cut(s)	924
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	55, 363, 1002
PvuII	CAGCTG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	1258
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	649
SaqAI	TTAA	3 cut(s)	294, 398, 1143
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	9 cut(s)	55, 79, 175, 363, 730, 748, 822, 826, 1002
Sau96I	GGNCC	1 cut(s)	924
SchI	GAGTC	2 cut(s)	406, 526
ScrFI	CCNGG	2 cut(s)	789, 790
SduI	GDGCHC	3 cut(s)	427, 943, 1161
SfaNI	GCATC	2 cut(s)	667, 1202
SfcI	CTRYAG	1 cut(s)	1078
SmaI	CCCGGG	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	1258
SmlI	CTYRAG	3 cut(s)	221, 230, 426
SmoI	CTYRAG	3 cut(s)	221, 230, 426
SphI	GCATGC	1 cut(s)	1172
Sse9I	AATT	6 cut(s)	73, 154, 520, 562, 764, 1202
SsiI	CCGC	3 cut(s)	965, 1088, 1147
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	787, 788
StyI	CCWWGG	2 cut(s)	601, 637
TaaI	ACNGT	3 cut(s)	335, 671, 1022
TaiI	ACGT	1 cut(s)	1038
TaqI	TCGA	5 cut(s)	267, 518, 647, 825, 1210
TasI	AATT	6 cut(s)	73, 154, 520, 562, 764, 1202
TfiI	GAWTC	2 cut(s)	170, 984
Tru1I	TTAA	3 cut(s)	294, 398, 1143
Tru9I	TTAA	3 cut(s)	294, 398, 1143
TscAI	CASTG	1 cut(s)	813
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	847
TspGWI	ACGGA	2 cut(s)	30, 1151
TspMI	CCCGGG	1 cut(s)	788
TspRI	CASTG	1 cut(s)	813
XapI	RAATTY	2 cut(s)	73, 1202
XceI	RCATGY	1 cut(s)	1172
XmaI	CCCGGG	1 cut(s)	788
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	1206
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.